Wall clock time and date at job start Tue Mar 31 2020 13:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46980 * 2 1 4 4 C 1.52998 * 109.47499 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47134 * 305.00068 * 4 3 2 6 6 C 1.53005 * 109.46806 * 64.99926 * 4 3 2 7 7 C 1.50699 * 109.47339 * 184.99649 * 4 3 2 8 8 O 1.21285 * 120.00349 * 336.89715 * 7 4 3 9 9 N 1.34780 * 119.99911 * 156.89322 * 7 4 3 10 10 C 1.46505 * 119.99798 * 7.59535 * 9 7 4 11 11 C 1.50696 * 109.47043 * 92.97395 * 10 9 7 12 12 H 1.08007 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00347 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99422 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 120.00262 * 179.97438 * 13 11 10 16 16 H 1.48509 * 109.47041 * 89.99950 * 15 13 11 17 17 H 1.48504 * 109.46930 * 209.99612 * 15 13 11 18 18 H 1.48501 * 109.47252 * 330.00009 * 15 13 11 19 19 C 1.40107 * 120.00276 * 187.59757 * 9 7 4 20 20 C 1.38846 * 120.01126 * 6.20717 * 19 9 7 21 21 C 1.38085 * 119.98362 * 179.79003 * 20 19 9 22 22 C 1.38730 * 120.01676 * 0.48832 * 21 20 19 23 23 O 1.35962 * 119.98654 * 179.72252 * 22 21 20 24 24 C 1.42893 * 117.00199 * 0.02562 * 23 22 21 25 25 C 1.53002 * 109.47075 * 180.02562 * 24 23 22 26 26 C 1.38725 * 120.02052 * 359.74367 * 22 21 20 27 27 C 1.38077 * 120.02160 * 0.02562 * 26 22 21 28 28 H 1.08997 * 109.47826 * 60.00094 * 1 2 3 29 29 H 1.08999 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.47084 * 299.99461 * 1 2 3 31 31 H 1.08997 * 109.47826 * 119.99906 * 2 1 3 32 32 H 1.08994 * 109.46944 * 240.00340 * 2 1 3 33 33 H 1.09006 * 109.47363 * 300.00655 * 3 2 1 34 34 H 1.09003 * 109.47226 * 60.00243 * 3 2 1 35 35 H 1.09000 * 109.47218 * 172.74105 * 6 4 3 36 36 H 1.08997 * 109.47536 * 292.74212 * 6 4 3 37 37 H 1.09001 * 109.47259 * 52.74290 * 6 4 3 38 38 H 1.09004 * 109.46774 * 212.97001 * 10 9 7 39 39 H 1.08998 * 109.47116 * 332.97388 * 10 9 7 40 40 H 0.97009 * 120.00126 * 179.97438 * 14 13 11 41 41 H 1.08008 * 120.01126 * 0.02697 * 20 19 9 42 42 H 1.08008 * 119.99493 * 180.20601 * 21 20 19 43 43 H 1.09006 * 109.47108 * 299.99875 * 24 23 22 44 44 H 1.08997 * 109.47334 * 60.00134 * 24 23 22 45 45 H 1.09002 * 109.47591 * 60.00233 * 25 24 23 46 46 H 1.09005 * 109.47289 * 179.97438 * 25 24 23 47 47 H 1.08992 * 109.47239 * 299.99773 * 25 24 23 48 48 H 1.08009 * 119.98375 * 180.02562 * 26 22 21 49 49 H 1.08000 * 120.01044 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9336 0.8531 0.8409 6 6 4.0794 0.8332 -1.3084 7 6 4.0722 2.8580 0.1231 8 8 3.3634 3.7844 -0.2092 9 7 5.3092 3.0946 0.6031 10 6 6.2258 1.9782 0.8477 11 6 7.0842 1.7568 -0.3709 12 1 6.9592 2.3846 -1.2408 13 6 8.0285 0.7521 -0.3758 14 7 8.1804 -0.0127 0.6833 15 14 9.0920 0.4772 -1.8866 16 1 10.3259 1.2967 -1.7792 17 1 9.4582 -0.9590 -1.9795 18 1 8.3376 0.8754 -3.1022 19 6 5.7186 4.4080 0.8682 20 6 4.8112 5.4534 0.7601 21 6 5.2141 6.7472 1.0257 22 6 6.5277 7.0038 1.3907 23 8 6.9252 8.2786 1.6466 24 6 5.9377 9.3037 1.5208 25 6 6.5667 10.6603 1.8448 26 6 7.4359 5.9603 1.4941 27 6 7.0331 4.6656 1.2335 28 1 -0.3635 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.6765 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 5.1616 0.9498 -1.3662 36 1 3.8260 -0.2265 -1.3384 37 1 3.6135 1.3422 -2.1522 38 1 6.8613 2.2104 1.7024 39 1 5.6515 1.0756 1.0565 40 1 8.8444 -0.7198 0.6798 41 1 3.7895 5.2543 0.4720 42 1 4.5076 7.5601 0.9449 43 1 5.5543 9.3157 0.5005 44 1 5.1198 9.1073 2.2140 45 1 7.3844 10.8566 1.1513 46 1 5.8135 11.4424 1.7484 47 1 6.9503 10.6487 2.8649 48 1 8.4584 6.1607 1.7787 49 1 7.7404 3.8533 1.3137 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078380343.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:07 Heat of formation + Delta-G solvation = -71.059714 kcal Electronic energy + Delta-G solvation = -27479.527908 eV Core-core repulsion = 23792.215329 eV Total energy + Delta-G solvation = -3687.312579 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93257 -40.65818 -38.56284 -36.94138 -36.57115 -34.56143 -33.05712 -32.48032 -31.81957 -30.00255 -28.93314 -27.45859 -25.42061 -25.28806 -24.36421 -23.50780 -22.25858 -21.53933 -20.07920 -19.18331 -18.64871 -18.33964 -17.84585 -16.98196 -16.55995 -16.42040 -16.12818 -15.94109 -15.60679 -15.24683 -14.76246 -14.66987 -14.46711 -14.27203 -14.23835 -13.97566 -13.70255 -13.44503 -13.28647 -13.21493 -13.11840 -12.93323 -12.85073 -12.66475 -12.64415 -12.50816 -12.18817 -12.03469 -11.96449 -11.87443 -11.65904 -11.63576 -11.54612 -11.36427 -10.62641 -10.50713 -10.15430 -9.93257 -8.48537 -8.16506 -6.33683 0.36522 0.43934 1.40287 1.43756 1.51466 1.68768 2.09813 2.34309 2.41394 2.92351 3.08846 3.51176 3.87374 3.94033 3.98980 4.04258 4.08371 4.19288 4.33571 4.35066 4.36677 4.40633 4.44837 4.53793 4.60821 4.67813 4.72900 4.86388 4.90967 4.92937 4.96742 4.98195 5.05350 5.07642 5.10871 5.18738 5.22018 5.24746 5.28695 5.36816 5.44251 5.47531 5.52481 5.60211 5.63885 5.68164 5.98951 6.08392 6.47896 6.54217 6.76105 7.18191 7.35782 8.83799 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008887 B = 0.004470 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3149.756227 B = 6262.509614 C = 8921.240543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.091 4.091 4 C -0.097 4.097 5 H 0.093 0.907 6 C -0.147 4.147 7 C 0.513 3.487 8 O -0.562 6.562 9 N -0.541 5.541 10 C 0.244 3.756 11 C -0.533 4.533 12 H 0.047 0.953 13 C 0.034 3.966 14 N -0.912 5.912 15 Si 0.947 3.053 16 H -0.278 1.278 17 H -0.277 1.277 18 H -0.272 1.272 19 C 0.108 3.892 20 C -0.145 4.145 21 C -0.185 4.185 22 C 0.094 3.906 23 O -0.330 6.330 24 C 0.043 3.957 25 C -0.146 4.146 26 C -0.136 4.136 27 C -0.116 4.116 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.052 0.948 38 H 0.026 0.974 39 H 0.048 0.952 40 H 0.269 0.731 41 H 0.167 0.833 42 H 0.149 0.851 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.143 0.857 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 8.773 1.423 12.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.160 4.160 3 C -0.129 4.129 4 C -0.118 4.118 5 H 0.111 0.889 6 C -0.205 4.205 7 C 0.306 3.694 8 O -0.444 6.444 9 N -0.260 5.260 10 C 0.124 3.876 11 C -0.571 4.571 12 H 0.065 0.935 13 C -0.168 4.168 14 N -0.551 5.551 15 Si 0.773 3.227 16 H -0.204 1.204 17 H -0.203 1.203 18 H -0.197 1.197 19 C 0.013 3.987 20 C -0.165 4.165 21 C -0.204 4.204 22 C 0.048 3.952 23 O -0.245 6.245 24 C -0.032 4.032 25 C -0.203 4.203 26 C -0.155 4.155 27 C -0.136 4.136 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.044 0.956 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.184 0.816 42 H 0.167 0.833 43 H 0.083 0.917 44 H 0.086 0.914 45 H 0.081 0.919 46 H 0.119 0.881 47 H 0.083 0.917 48 H 0.160 0.840 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.820 9.076 1.379 12.730 hybrid contribution 0.911 -0.393 -0.667 1.195 sum -7.909 8.683 0.712 11.767 Atomic orbital electron populations 1.21738 0.94652 1.02216 1.01891 1.21561 0.96734 0.95062 1.02641 1.21418 0.91106 0.98155 1.02250 1.21285 0.97875 0.91094 1.01543 0.88928 1.21889 1.03088 1.01212 0.94266 1.21360 0.80183 0.92694 0.75191 1.90266 1.57994 1.45727 1.50388 1.46022 1.14425 1.06357 1.59190 1.19389 0.88101 0.83448 0.96664 1.21331 1.19329 1.16266 1.00187 0.93457 1.25452 0.97663 0.95162 0.98495 1.69983 1.35156 1.20123 1.29807 0.85715 0.79220 0.77538 0.80233 1.20401 1.20264 1.19722 1.18265 0.94193 0.84830 1.01379 1.22296 1.02297 0.91187 1.00699 1.21343 0.95401 0.97685 1.05940 1.18957 0.93106 0.84462 0.98667 1.86025 1.40110 1.13286 1.85110 1.23051 0.91291 0.87098 1.01755 1.21790 1.02430 0.93287 1.02769 1.20327 1.00128 0.89822 1.05215 1.20865 0.94333 0.97089 1.01309 0.92665 0.91562 0.92753 0.91765 0.91229 0.91836 0.92461 0.91341 0.90028 0.92922 0.95647 0.93429 0.92148 0.81609 0.83303 0.91693 0.91374 0.91889 0.88068 0.91703 0.83956 0.85313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 9.91 71.98 0.71 -2.12 16 2 C -0.12 -2.84 5.69 30.59 0.17 -2.66 16 3 C -0.09 -2.64 4.10 30.59 0.13 -2.51 16 4 C -0.10 -3.38 1.90 -11.54 -0.02 -3.41 16 5 H 0.09 3.27 6.41 -2.39 -0.02 3.26 16 6 C -0.15 -5.12 8.67 71.98 0.62 -4.50 16 7 C 0.51 21.30 6.69 87.66 0.59 21.89 16 8 O -0.56 -24.27 12.69 -3.05 -0.04 -24.31 16 9 N -0.54 -23.87 2.69 -635.17 -1.71 -25.58 16 10 C 0.24 11.50 4.14 85.63 0.35 11.86 16 11 C -0.53 -26.95 6.77 25.60 0.17 -26.78 16 12 H 0.05 2.52 7.81 -2.91 -0.02 2.50 16 13 C 0.03 1.71 5.46 84.65 0.46 2.17 16 14 N -0.91 -48.20 13.29 21.45 0.28 -47.92 16 15 Si 0.95 41.12 29.54 68.60 2.03 43.14 16 16 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 C 0.11 4.65 6.49 38.11 0.25 4.90 16 20 C -0.15 -5.72 8.98 22.38 0.20 -5.52 16 21 C -0.18 -6.15 9.03 22.35 0.20 -5.95 16 22 C 0.09 3.15 6.69 22.50 0.15 3.30 16 23 O -0.33 -9.65 10.14 -93.13 -0.94 -10.59 16 24 C 0.04 0.88 5.46 71.98 0.39 1.27 16 25 C -0.15 -2.19 10.28 71.98 0.74 -1.45 16 26 C -0.14 -4.89 9.98 22.35 0.22 -4.66 16 27 C -0.12 -4.76 9.09 22.38 0.20 -4.55 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.07 1.57 6.73 -2.39 -0.02 1.55 16 33 H 0.06 1.90 8.04 -2.38 -0.02 1.89 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.07 2.86 5.25 -2.39 -0.01 2.84 16 36 H 0.08 2.43 6.93 -2.39 -0.02 2.41 16 37 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 38 H 0.03 1.28 6.67 -2.38 -0.02 1.27 16 39 H 0.05 2.26 5.75 -2.39 -0.01 2.25 16 40 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 41 H 0.17 6.83 4.70 -46.72 -0.22 6.61 16 42 H 0.15 3.97 6.29 -2.91 -0.02 3.96 16 43 H 0.06 1.26 7.66 -2.38 -0.02 1.24 16 44 H 0.07 1.28 7.66 -2.39 -0.02 1.26 16 45 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 47 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.14 4.52 8.06 -2.91 -0.02 4.50 16 49 H 0.13 5.68 6.20 -2.91 -0.02 5.66 16 Total: -1.00 -58.49 384.74 5.90 -52.59 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.73 Total: 31.38 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 5.55 Total: -18.71 kcal Atomic # 7 Polarization: -72.07 SS G_CDS: -1.42 Total: -73.49 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -0.98 Total: -34.91 kcal Atomic # 14 Polarization: 41.12 SS G_CDS: 2.03 Total: 43.14 kcal Total: -58.49 5.90 -52.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078380343.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.468 kcal (2) G-P(sol) polarization free energy of solvation -58.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds