Wall clock time and date at job start Tue Mar 31 2020 12:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47461 * 2 1 4 4 C 1.53002 * 109.46921 * 239.99582 * 2 1 3 5 5 C 1.53001 * 109.46868 * 119.99672 * 2 1 3 6 6 C 1.53009 * 109.47129 * 59.99766 * 5 2 1 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 2 8 8 N 1.46500 * 109.47128 * 179.97438 * 7 6 5 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 6 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.09008 * 109.47222 * 300.00664 * 1 2 3 28 28 H 1.09001 * 109.46895 * 60.00151 * 1 2 3 29 29 H 1.08996 * 109.47386 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47243 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46942 * 299.99820 * 3 2 1 32 32 H 1.08999 * 109.47699 * 59.99483 * 3 2 1 33 33 H 1.09001 * 109.46828 * 299.99817 * 4 2 1 34 34 H 1.09001 * 109.47118 * 60.00403 * 4 2 1 35 35 H 1.08998 * 109.46644 * 180.02562 * 4 2 1 36 36 H 1.08993 * 109.47356 * 300.00008 * 5 2 1 37 37 H 1.08998 * 109.47029 * 179.97438 * 5 2 1 38 38 H 1.09002 * 109.46549 * 59.99915 * 6 5 2 39 39 H 1.08998 * 109.47227 * 300.00354 * 6 5 2 40 40 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 41 41 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 42 42 H 0.97001 * 119.99420 * 0.02562 * 8 7 6 43 43 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 44 44 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0399 -0.7212 1.2493 6 6 1.5298 -2.1637 1.2494 7 6 2.0403 -2.8851 2.4984 8 7 1.5514 -4.2661 2.4988 9 6 1.8768 -5.0959 3.5097 10 8 2.5740 -4.6993 4.4193 11 6 1.3743 -6.5167 3.5098 12 6 1.8760 -7.2269 4.7407 13 6 3.0845 -7.8990 4.7062 14 6 3.5479 -8.5522 5.8334 15 6 2.8080 -8.5299 6.9995 16 6 1.5918 -7.8609 7.0356 17 8 0.8594 -7.8423 8.1785 18 6 1.3084 -8.5917 9.2055 19 1 2.2544 -9.1064 9.1253 20 6 0.5554 -8.7016 10.3646 21 7 -0.5973 -8.0751 10.4621 22 14 1.1770 -9.7405 11.7872 23 1 1.9957 -8.8974 12.6950 24 1 0.0215 -10.2967 12.5360 25 1 2.0081 -10.8532 11.2614 26 6 1.1286 -7.2062 5.9015 27 1 -0.3634 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 -1.7490 -1.2491 34 1 1.6767 -0.2075 -2.1392 35 1 3.1299 -0.7217 -1.2489 36 1 1.6766 -0.2074 2.1392 37 1 3.1299 -0.7216 1.2491 38 1 1.8932 -2.6776 0.3594 39 1 0.4399 -2.1637 1.2493 40 1 1.6772 -2.3713 3.3885 41 1 3.1303 -2.8851 2.4980 42 1 0.9934 -4.5832 1.7714 43 1 1.7377 -7.0306 2.6198 44 1 0.2844 -6.5166 3.5097 45 1 3.6673 -7.9135 3.7971 46 1 4.4916 -9.0764 5.8033 47 1 3.1730 -9.0360 7.8810 48 1 -1.1242 -8.1523 11.2728 49 1 0.1848 -6.6819 5.9275 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000089831591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:03 Heat of formation + Delta-G solvation = -93.770204 kcal Electronic energy + Delta-G solvation = -25609.710343 eV Core-core repulsion = 21921.412963 eV Total energy + Delta-G solvation = -3688.297380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.12149 -40.39221 -39.08105 -38.18780 -36.07371 -34.34411 -33.57927 -32.31366 -30.86677 -28.76005 -28.12129 -28.08927 -27.32821 -26.36739 -23.31725 -22.97642 -22.55950 -21.39796 -19.50419 -19.42525 -18.79712 -17.92198 -17.00301 -16.96004 -16.69771 -16.38123 -16.09623 -15.70473 -15.57506 -15.40619 -15.08635 -14.93714 -14.78776 -14.52659 -14.32782 -13.99594 -13.68271 -13.52973 -13.42683 -12.97010 -12.78862 -12.62807 -12.61568 -12.59369 -12.50078 -12.46357 -12.37309 -12.21658 -12.10043 -11.80482 -11.44229 -11.31468 -11.29332 -11.20338 -10.89953 -10.78641 -10.06396 -9.63084 -8.97487 -8.46920 -6.15523 0.52678 0.76179 1.33749 1.43733 1.51945 1.69981 2.17678 2.26723 2.85850 3.18764 3.44845 3.75422 3.81822 3.92888 3.93321 4.10602 4.13170 4.16345 4.29104 4.32584 4.45469 4.50354 4.59121 4.65886 4.66413 4.70570 4.72621 4.74336 4.87710 4.88840 4.96446 4.97143 5.08071 5.11445 5.13290 5.14301 5.22772 5.25709 5.29689 5.31695 5.42710 5.52423 5.58709 5.59644 5.65586 5.73229 5.75943 6.02994 6.24317 6.62548 6.97476 7.34596 7.79276 8.76687 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023421 B = 0.001918 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.212791 B =14596.399353 C =15269.730823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.143 4.143 5 C -0.107 4.107 6 C -0.121 4.121 7 C 0.118 3.882 8 N -0.717 5.717 9 C 0.511 3.489 10 O -0.583 6.583 11 C -0.091 4.091 12 C -0.027 4.027 13 C -0.181 4.181 14 C -0.074 4.074 15 C -0.247 4.247 16 C 0.110 3.890 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.922 5.922 22 Si 1.021 2.979 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.252 1.252 26 C -0.194 4.194 27 H 0.049 0.951 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.053 0.947 42 H 0.419 0.581 43 H 0.145 0.855 44 H 0.122 0.878 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.118 0.882 48 H 0.272 0.728 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.374 11.562 -26.719 29.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.069 4.069 3 C -0.200 4.200 4 C -0.200 4.200 5 C -0.145 4.145 6 C -0.158 4.158 7 C -0.006 4.006 8 N -0.371 5.371 9 C 0.298 3.702 10 O -0.462 6.462 11 C -0.130 4.130 12 C -0.027 4.027 13 C -0.199 4.199 14 C -0.092 4.092 15 C -0.267 4.267 16 C 0.060 3.940 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.176 1.176 26 C -0.213 4.213 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.256 0.744 43 H 0.163 0.837 44 H 0.140 0.860 45 H 0.166 0.834 46 H 0.163 0.837 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 4.496 12.010 -25.895 28.896 hybrid contribution -0.201 -0.270 1.046 1.099 sum 4.294 11.740 -24.849 27.816 Atomic orbital electron populations 1.21950 0.94386 1.02260 1.01609 1.20531 0.95853 0.95370 0.95101 1.21882 1.00975 0.95425 1.01765 1.21935 1.00918 1.00653 0.96530 1.21553 1.00733 0.94435 0.97756 1.21852 1.02025 0.95631 0.96291 1.21362 0.98747 0.81320 0.99163 1.45853 1.53965 1.12017 1.25243 1.20976 0.79544 0.88361 0.81297 1.90754 1.39743 1.78175 1.37550 1.20710 1.03884 0.90811 0.97597 1.19228 0.94263 0.95900 0.93322 1.20988 0.96851 1.02493 0.99586 1.21141 0.99005 0.97455 0.91625 1.21295 0.96887 1.07790 1.00684 1.19893 0.91676 0.95004 0.87376 1.83935 1.48675 1.62263 1.19312 1.21828 1.06565 1.27880 0.92773 0.88256 1.26629 0.95437 0.99043 1.01119 1.70190 1.13630 1.43055 1.29171 0.84565 0.78087 0.77654 0.75724 1.18967 1.19324 1.17567 1.20233 1.02460 1.06560 0.92045 0.93223 0.92468 0.91801 0.92719 0.92269 0.93040 0.91714 0.92531 0.92820 0.92425 0.91873 0.89426 0.90067 0.93809 0.92820 0.74372 0.83682 0.86017 0.83441 0.83667 0.86457 0.91856 0.87605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.12 71.98 0.58 -0.79 16 2 C -0.07 -0.67 0.80 -52.18 -0.04 -0.71 16 3 C -0.14 -1.44 8.47 71.98 0.61 -0.83 16 4 C -0.14 -1.20 8.12 71.98 0.58 -0.62 16 5 C -0.11 -1.24 4.27 30.60 0.13 -1.11 16 6 C -0.12 -1.30 4.62 30.60 0.14 -1.16 16 7 C 0.12 2.16 5.67 86.38 0.49 2.65 16 8 N -0.72 -12.91 5.56 -463.06 -2.57 -15.48 16 9 C 0.51 14.03 7.82 87.66 0.69 14.72 16 10 O -0.58 -23.28 16.03 -3.04 -0.05 -23.33 16 11 C -0.09 -2.13 5.83 29.10 0.17 -1.96 16 12 C -0.03 -0.95 4.37 -19.88 -0.09 -1.03 16 13 C -0.18 -6.08 9.70 22.30 0.22 -5.86 16 14 C -0.07 -2.77 10.04 22.25 0.22 -2.55 16 15 C -0.25 -11.67 9.17 22.39 0.21 -11.46 16 16 C 0.11 5.94 6.65 22.58 0.15 6.09 16 17 O -0.23 -15.00 9.76 -22.74 -0.22 -15.22 16 18 C -0.41 -25.36 9.49 67.92 0.64 -24.71 16 19 H 0.10 5.61 5.21 -2.91 -0.02 5.59 16 20 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 21 N -0.92 -58.54 13.67 21.61 0.30 -58.25 16 22 Si 1.02 44.50 29.55 68.60 2.03 46.53 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 25 H -0.25 -10.18 7.11 99.48 0.71 -9.48 16 26 C -0.19 -8.95 9.65 22.39 0.22 -8.74 16 27 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.54 6.43 -2.39 -0.02 0.52 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.46 6.43 -2.39 -0.02 0.45 16 34 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.09 0.71 6.43 -2.39 -0.02 0.69 16 39 H 0.08 0.77 6.43 -2.39 -0.02 0.76 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.42 4.07 8.47 -92.71 -0.79 3.29 16 43 H 0.15 2.08 8.09 -2.39 -0.02 2.06 16 44 H 0.12 2.37 8.08 -2.39 -0.02 2.35 16 45 H 0.15 3.71 8.06 -2.91 -0.02 3.68 16 46 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 47 H 0.12 5.58 5.64 -2.91 -0.02 5.56 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 49 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -83.99 397.42 5.02 -78.98 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.15 Total: 25.87 kcal Atomic # 6 Polarization: -44.48 SS G_CDS: 5.39 Total: -39.09 kcal Atomic # 7 Polarization: -71.45 SS G_CDS: -2.28 Total: -73.73 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.27 Total: -38.56 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -83.99 5.02 -78.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089831591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.795 kcal (2) G-P(sol) polarization free energy of solvation -83.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds