Wall clock time and date at job start Tue Mar 31 2020 12:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47225 * 2 1 4 4 C 1.53003 * 109.47495 * 240.00368 * 2 1 3 5 5 C 1.50694 * 109.47351 * 59.99513 * 4 2 1 6 6 H 1.08000 * 119.99999 * 0.02562 * 5 4 2 7 7 C 1.37876 * 120.00425 * 180.02562 * 5 4 2 8 8 N 1.31522 * 119.99731 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00265 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47182 * 59.99972 * 9 7 5 11 11 H 1.48501 * 109.47134 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47348 * 299.99833 * 9 7 5 13 13 C 1.52999 * 109.47220 * 119.99900 * 2 1 3 14 14 N 1.46497 * 109.47062 * 300.00287 * 13 2 1 15 15 C 1.39971 * 119.99955 * 180.02562 * 14 13 2 16 16 C 1.38726 * 120.08994 * 359.97438 * 15 14 13 17 17 C 1.38212 * 119.97980 * 179.97438 * 16 15 14 18 18 C 1.38252 * 120.16246 * 0.02879 * 17 16 15 19 19 C 1.38285 * 120.17957 * 359.97211 * 18 17 16 20 20 C 1.38501 * 120.01720 * 359.74868 * 19 18 17 21 21 O 1.36014 * 120.08053 * 180.25338 * 20 19 18 22 22 C 1.42902 * 116.99850 * 5.71758 * 21 20 19 23 23 H 1.08993 * 110.45793 * 34.95715 * 22 21 20 24 24 C 1.54509 * 110.50692 * 157.56651 * 22 21 20 25 25 C 1.54474 * 104.06324 * 118.64657 * 24 22 21 26 26 O 1.44425 * 104.80703 * 23.97547 * 25 24 22 27 27 C 1.44645 * 105.36538 * 319.56553 * 26 25 24 28 28 H 1.08994 * 109.47043 * 299.99775 * 1 2 3 29 29 H 1.08999 * 109.46904 * 60.00443 * 1 2 3 30 30 H 1.09001 * 109.47065 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47660 * 179.97438 * 3 2 1 32 32 H 1.09001 * 109.47120 * 300.00055 * 3 2 1 33 33 H 1.09002 * 109.47100 * 59.99943 * 3 2 1 34 34 H 1.09000 * 109.47195 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46794 * 299.99665 * 4 2 1 36 36 H 0.97000 * 119.99917 * 179.97438 * 8 7 5 37 37 H 1.08996 * 109.47165 * 179.97438 * 13 2 1 38 38 H 1.09002 * 109.47128 * 60.00298 * 13 2 1 39 39 H 0.96998 * 119.99834 * 359.97438 * 14 13 2 40 40 H 1.08007 * 120.00767 * 0.02562 * 16 15 14 41 41 H 1.08002 * 119.91872 * 180.02562 * 17 16 15 42 42 H 1.08000 * 119.91106 * 179.97438 * 18 17 16 43 43 H 1.08003 * 119.98992 * 180.02562 * 19 18 17 44 44 H 1.09001 * 110.50500 * 237.28478 * 24 22 21 45 45 H 1.08995 * 110.51451 * 359.86098 * 24 22 21 46 46 H 1.09003 * 110.37671 * 142.80707 * 25 24 22 47 47 H 1.09003 * 110.37465 * 265.14285 * 25 24 22 48 48 H 1.09000 * 110.34653 * 281.59398 * 27 26 25 49 49 H 1.09003 * 110.50846 * 159.18611 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.5378 -0.0108 -2.4797 6 1 0.9171 0.8674 -2.3806 7 6 1.8704 -0.4821 -3.7320 8 7 2.6267 -1.5513 -3.8527 9 14 1.2483 0.3989 -5.2571 10 1 1.7443 1.7986 -5.2572 11 1 1.7433 -0.3012 -6.4697 12 1 -0.2366 0.3999 -5.2572 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8902 -0.5085 3.7167 16 6 2.6877 -1.6362 3.8461 17 6 3.0211 -2.1058 5.1025 18 6 2.5612 -1.4547 6.2321 19 6 1.7658 -0.3300 6.1108 20 6 1.4320 0.1504 4.8554 21 8 0.6540 1.2595 4.7346 22 6 0.3200 1.9520 5.9392 23 1 1.1481 1.9075 6.6463 24 6 -0.0533 3.4199 5.6339 25 6 -1.5171 3.5422 6.1119 26 8 -1.6709 2.5004 7.1002 27 6 -0.9606 1.3586 6.5673 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 -0.7215 -1.2490 35 1 1.6768 -1.7489 -1.2493 36 1 2.8605 -1.8831 -4.7337 37 1 3.1300 -0.7216 1.2490 38 1 1.6767 -1.7489 1.2492 39 1 0.9943 0.7582 2.3563 40 1 3.0487 -2.1466 2.9653 41 1 3.6424 -2.9836 5.2022 42 1 2.8239 -1.8254 7.2119 43 1 1.4086 0.1765 6.9952 44 1 0.5889 4.1011 6.1922 45 1 0.0194 3.6181 4.5646 46 1 -1.6891 4.5201 6.5616 47 1 -2.2027 3.3803 5.2801 48 1 -1.5609 0.8604 5.8059 49 1 -0.7041 0.6619 7.3653 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092137349.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:14 Heat of formation + Delta-G solvation = -83.991297 kcal Electronic energy + Delta-G solvation = -27245.025456 eV Core-core repulsion = 23557.152122 eV Total energy + Delta-G solvation = -3687.873335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.52139 -40.15649 -39.04648 -37.86599 -35.62128 -34.18524 -32.57920 -30.87500 -30.31035 -29.61171 -28.73316 -27.99656 -27.15298 -24.92227 -24.30005 -23.43068 -22.66471 -21.56511 -19.90821 -19.25712 -18.37031 -18.05138 -17.39993 -16.84916 -16.74441 -16.49786 -16.38593 -15.88288 -15.68218 -15.29977 -15.16029 -15.08697 -14.44218 -14.35934 -14.26177 -14.04271 -14.02513 -13.90943 -13.30869 -13.02166 -12.84426 -12.77124 -12.63454 -12.49950 -12.37655 -12.34699 -12.28539 -12.13253 -11.94981 -11.70006 -11.58589 -11.54518 -10.98230 -10.91712 -10.85548 -10.85508 -10.50729 -9.41518 -8.14777 -8.05038 -6.21939 0.51266 0.72977 1.41462 1.43054 1.50370 2.11155 2.42381 2.62512 2.96841 3.02447 3.19539 3.45268 3.70043 3.81819 3.96516 4.01598 4.09940 4.16444 4.19805 4.21084 4.24728 4.35877 4.56666 4.61192 4.68024 4.70889 4.74273 4.74710 4.76667 4.78716 4.85712 4.95347 4.96354 4.97622 5.08912 5.12145 5.30012 5.42156 5.46496 5.48784 5.50479 5.54841 5.64354 5.74983 5.79574 5.89011 5.95055 6.18498 6.33288 6.63996 6.91228 6.94966 7.45431 8.97344 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015194 B = 0.002959 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.350575 B = 9459.948654 C =10944.298873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.117 4.117 4 C 0.044 3.956 5 C -0.517 4.517 6 H 0.067 0.933 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.955 3.045 10 H -0.268 1.268 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.150 3.850 14 N -0.734 5.734 15 C 0.182 3.818 16 C -0.188 4.188 17 C -0.106 4.106 18 C -0.148 4.148 19 C -0.162 4.162 20 C 0.035 3.965 21 O -0.319 6.319 22 C 0.052 3.948 23 H 0.098 0.902 24 C -0.150 4.150 25 C 0.042 3.958 26 O -0.388 6.388 27 C 0.025 3.975 28 H 0.057 0.943 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.051 0.949 33 H 0.057 0.943 34 H -0.010 1.010 35 H -0.011 1.011 36 H 0.260 0.740 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.403 0.597 40 H 0.120 0.880 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.146 0.854 44 H 0.105 0.895 45 H 0.090 0.910 46 H 0.116 0.884 47 H 0.063 0.937 48 H 0.061 0.939 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.916 7.063 24.177 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.175 4.175 4 C 0.006 3.994 5 C -0.555 4.555 6 H 0.085 0.915 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.025 3.975 14 N -0.365 5.365 15 C 0.078 3.922 16 C -0.211 4.211 17 C -0.125 4.125 18 C -0.168 4.168 19 C -0.181 4.181 20 C -0.013 4.013 21 O -0.234 6.234 22 C -0.005 4.005 23 H 0.116 0.884 24 C -0.188 4.188 25 C -0.034 4.034 26 O -0.307 6.307 27 C -0.052 4.052 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.008 0.992 35 H 0.007 0.993 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.239 0.761 40 H 0.138 0.862 41 H 0.157 0.843 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.124 0.876 45 H 0.109 0.891 46 H 0.134 0.866 47 H 0.081 0.919 48 H 0.079 0.921 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.968 6.962 23.915 25.221 hybrid contribution -0.065 0.112 -1.487 1.493 sum -4.034 7.074 22.427 23.860 Atomic orbital electron populations 1.21635 0.94346 1.00717 1.00792 1.20669 0.96137 0.96101 0.93555 1.21633 0.99844 0.95169 1.00816 1.18933 0.94362 0.94157 0.91915 1.21560 1.30541 1.12069 0.91364 0.91511 1.25886 0.95637 0.95855 1.02488 1.70096 1.38629 1.24811 1.24164 0.85647 0.78917 0.78801 0.78582 1.19318 1.21423 1.19346 1.21187 0.97401 0.95129 0.83752 1.44643 1.57485 1.32985 1.01427 1.17529 0.96364 0.94326 0.83999 1.20714 1.03520 0.97673 0.99201 1.21094 0.99797 1.00285 0.91333 1.20993 1.00113 0.96381 0.99339 1.21246 1.02424 0.99270 0.95200 1.18516 0.98975 0.90670 0.93100 1.86053 1.65775 1.38016 1.33539 1.23889 0.98052 0.92400 0.86115 0.88377 1.23038 0.97810 0.93677 1.04246 1.23594 0.95039 0.92818 0.91980 1.89162 1.75050 1.23244 1.43269 1.24042 0.91892 0.89843 0.99394 0.92430 0.92990 0.94302 0.94248 0.92994 0.92379 0.99202 0.99252 0.93104 0.93468 0.93530 0.76055 0.86158 0.84274 0.83678 0.83692 0.87622 0.89119 0.86603 0.91872 0.92075 0.87147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.28 8.05 71.98 0.58 -3.70 16 2 C -0.06 -2.49 0.54 -52.18 -0.03 -2.52 16 3 C -0.12 -4.24 8.05 71.98 0.58 -3.66 16 4 C 0.04 2.22 4.04 29.85 0.12 2.34 16 5 C -0.52 -28.00 7.65 25.60 0.20 -27.81 16 6 H 0.07 3.44 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.09 5.46 84.65 0.46 0.37 16 8 N -0.94 -56.45 13.29 21.45 0.28 -56.17 16 9 Si 0.96 43.80 29.54 68.60 2.03 45.82 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 12 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 13 C 0.15 5.18 3.81 86.38 0.33 5.51 16 14 N -0.73 -22.19 5.13 -338.98 -1.74 -23.93 16 15 C 0.18 5.18 6.67 38.22 0.25 5.44 16 16 C -0.19 -5.08 9.31 22.38 0.21 -4.87 16 17 C -0.11 -2.32 10.04 22.27 0.22 -2.10 16 18 C -0.15 -2.83 10.04 22.28 0.22 -2.60 16 19 C -0.16 -3.25 8.82 22.34 0.20 -3.05 16 20 C 0.04 0.88 6.66 22.59 0.15 1.03 16 21 O -0.32 -7.42 9.03 -93.71 -0.85 -8.26 16 22 C 0.05 0.89 2.95 31.61 0.09 0.98 16 23 H 0.10 1.43 6.38 -2.39 -0.02 1.41 16 24 C -0.15 -2.10 6.90 31.61 0.22 -1.88 16 25 C 0.04 0.59 7.63 72.48 0.55 1.14 16 26 O -0.39 -7.31 11.65 -148.98 -1.74 -9.05 16 27 C 0.03 0.44 7.03 72.49 0.51 0.95 16 28 H 0.06 1.78 6.86 -2.39 -0.02 1.76 16 29 H 0.05 2.02 6.62 -2.39 -0.02 2.00 16 30 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.05 2.00 6.62 -2.39 -0.02 1.99 16 33 H 0.06 1.77 6.86 -2.39 -0.02 1.75 16 34 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 35 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 36 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.05 1.68 7.95 -2.39 -0.02 1.66 16 38 H 0.05 1.67 7.95 -2.39 -0.02 1.65 16 39 H 0.40 11.86 5.53 -92.71 -0.51 11.35 16 40 H 0.12 3.37 6.74 -2.91 -0.02 3.35 16 41 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.15 2.14 5.44 -2.91 -0.02 2.12 16 44 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.09 1.37 8.00 -2.39 -0.02 1.35 16 46 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 48 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 49 H 0.11 1.55 7.60 -2.39 -0.02 1.53 16 Total: -1.00 -64.36 381.33 3.29 -61.07 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: 0.43 Total: 24.96 kcal Atomic # 6 Polarization: -39.32 SS G_CDS: 4.87 Total: -34.45 kcal Atomic # 7 Polarization: -78.64 SS G_CDS: -1.46 Total: -80.10 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -2.58 Total: -17.31 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.82 kcal Total: -64.36 3.29 -61.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092137349.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.918 kcal (2) G-P(sol) polarization free energy of solvation -64.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds