Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47269 * 2 1 4 4 C 1.53001 * 109.47255 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47255 * 179.97438 * 4 3 2 6 6 C 1.52994 * 109.47535 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47535 * 179.97438 * 6 5 4 8 8 C 1.53002 * 109.47269 * 179.97438 * 7 6 5 9 9 C 1.50693 * 109.47013 * 179.97438 * 8 7 6 10 10 O 1.21288 * 120.00547 * 0.02562 * 9 8 7 11 11 N 1.34783 * 120.00115 * 180.02562 * 9 8 7 12 12 C 1.39981 * 120.00350 * 175.49199 * 11 9 8 13 13 C 1.38922 * 120.00283 * 215.12488 * 12 11 9 14 14 C 1.38008 * 120.00014 * 180.02562 * 13 12 11 15 15 C 1.38910 * 119.99976 * 0.02562 * 14 13 12 16 16 O 1.35774 * 119.99471 * 179.97438 * 15 14 13 17 17 C 1.34808 * 117.00313 * 5.34797 * 16 15 14 18 18 H 1.08002 * 120.00230 * 354.95457 * 17 16 15 19 19 C 1.38633 * 120.00210 * 174.96513 * 17 16 15 20 20 N 1.31575 * 119.99815 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00323 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47088 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47382 * 119.99463 * 21 19 17 24 24 H 1.48501 * 109.46916 * 239.99754 * 21 19 17 25 25 C 1.38907 * 120.00174 * 0.25692 * 15 14 13 26 26 C 1.37999 * 120.00277 * 359.44446 * 25 15 14 27 27 H 1.09001 * 109.46913 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46923 * 300.00014 * 1 2 3 29 29 H 1.08997 * 109.46957 * 59.99881 * 1 2 3 30 30 H 1.09000 * 109.47159 * 239.99728 * 2 1 3 31 31 H 1.08996 * 109.47400 * 119.99840 * 2 1 3 32 32 H 1.09000 * 109.47252 * 59.99785 * 3 2 1 33 33 H 1.09006 * 109.47023 * 299.99748 * 3 2 1 34 34 H 1.08994 * 109.47236 * 59.99873 * 4 3 2 35 35 H 1.09006 * 109.46580 * 299.99628 * 4 3 2 36 36 H 1.09000 * 109.47252 * 59.99394 * 5 4 3 37 37 H 1.09009 * 109.46749 * 300.00069 * 5 4 3 38 38 H 1.09000 * 109.47317 * 59.99468 * 6 5 4 39 39 H 1.09011 * 109.46742 * 300.00115 * 6 5 4 40 40 H 1.08994 * 109.47102 * 59.99825 * 7 6 5 41 41 H 1.08996 * 109.46779 * 299.99863 * 7 6 5 42 42 H 1.09008 * 109.46923 * 59.99986 * 8 7 6 43 43 H 1.08997 * 109.46957 * 300.00119 * 8 7 6 44 44 H 0.97001 * 119.99577 * 355.49141 * 11 9 8 45 45 H 1.07997 * 119.99847 * 359.97438 * 13 12 11 46 46 H 1.07994 * 119.99782 * 179.97438 * 14 13 12 47 47 H 0.97000 * 119.99968 * 180.02562 * 20 19 17 48 48 H 1.08008 * 119.99608 * 179.70477 * 25 15 14 49 49 H 1.07999 * 119.99955 * 180.28029 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0801 2.8849 -0.0013 6 6 5.6100 2.8850 -0.0013 7 6 6.1201 4.3275 -0.0026 8 6 7.6501 4.3275 -0.0019 9 6 8.1524 5.7482 -0.0038 10 8 7.3643 6.6702 -0.0051 11 7 9.4775 5.9946 -0.0042 12 6 9.9448 7.3105 -0.1012 13 6 11.1141 7.5827 -0.8002 14 6 11.5751 8.8800 -0.8954 15 6 10.8701 9.9136 -0.2918 16 8 11.3240 11.1898 -0.3851 17 6 12.4007 11.4008 -1.1684 18 1 12.9111 10.5639 -1.6217 19 6 12.8530 12.6921 -1.3919 20 7 12.2310 13.7118 -0.8399 21 14 14.3453 12.9845 -2.4767 22 1 14.8596 11.6826 -2.9725 23 1 13.9596 13.8365 -3.6302 24 1 15.4036 13.6667 -1.6893 25 6 9.7041 9.6408 0.4121 26 6 9.2398 8.3444 0.5021 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9330 0.9288 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 3.7171 3.3991 0.8886 37 1 3.7163 3.3985 -0.8914 38 1 5.9734 2.3707 -0.8910 39 1 5.9734 2.3715 0.8890 40 1 5.7567 4.8421 0.8869 41 1 5.7567 4.8404 -0.8930 42 1 8.0138 3.8127 -0.8913 43 1 8.0130 3.8146 0.8887 44 1 10.1073 5.2599 0.0629 45 1 11.6628 6.7789 -1.2685 46 1 12.4843 9.0915 -1.4385 47 1 12.5473 14.6153 -0.9965 48 1 9.1587 10.4439 0.8854 49 1 8.3308 8.1329 1.0456 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000106167450.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -100.001132 kcal Electronic energy + Delta-G solvation = -24750.312923 eV Core-core repulsion = 21061.745350 eV Total energy + Delta-G solvation = -3688.567573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48025 -40.36835 -38.29334 -37.64965 -35.69304 -35.37033 -34.16266 -32.87854 -31.87922 -30.15514 -28.84754 -27.34327 -25.85695 -23.96913 -23.41190 -22.44266 -21.88720 -21.56754 -21.17832 -19.87069 -18.96998 -18.33293 -17.66059 -17.15737 -16.60446 -16.36654 -16.11026 -15.68387 -15.49970 -15.39166 -15.11818 -14.71537 -14.57704 -14.50123 -14.46270 -14.12674 -13.62004 -13.50971 -13.35427 -13.29022 -13.13254 -12.85815 -12.71207 -12.47261 -12.44140 -12.32727 -12.07986 -11.97988 -11.72611 -11.70360 -11.40193 -11.35404 -11.27665 -11.21269 -11.06950 -10.74570 -10.50582 -9.85573 -8.61535 -8.45707 -6.13467 0.50608 0.54571 1.36707 1.44314 1.55500 1.70910 2.17518 2.22492 2.82500 3.15183 3.51448 3.69455 3.80731 4.00939 4.04778 4.12885 4.14197 4.14685 4.21161 4.37051 4.41957 4.48778 4.59095 4.62997 4.64570 4.71428 4.80927 4.82385 4.90117 4.92177 4.94802 5.06726 5.11239 5.16217 5.16912 5.18201 5.18998 5.28105 5.31210 5.38767 5.39128 5.47448 5.50316 5.56160 5.57052 5.60156 5.68174 6.02516 6.17548 6.60031 6.98432 7.30737 7.79251 8.77852 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.041121 B = 0.001483 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.746440 B =18881.727719 C =19133.133749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.115 4.115 5 C -0.123 4.123 6 C -0.111 4.111 7 C -0.105 4.105 8 C -0.125 4.125 9 C 0.499 3.501 10 O -0.575 6.575 11 N -0.652 5.652 12 C 0.060 3.940 13 C -0.080 4.080 14 C -0.221 4.221 15 C 0.107 3.893 16 O -0.233 6.233 17 C -0.413 4.413 18 H 0.107 0.893 19 C -0.025 4.025 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.247 1.247 23 H -0.271 1.271 24 H -0.269 1.269 25 C -0.192 4.192 26 C -0.076 4.076 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.427 0.573 45 H 0.160 0.840 46 H 0.132 0.868 47 H 0.272 0.728 48 H 0.110 0.890 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.285 -31.047 0.561 33.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.162 4.162 3 C -0.160 4.160 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.148 4.148 7 C -0.143 4.143 8 C -0.165 4.165 9 C 0.289 3.711 10 O -0.454 6.454 11 N -0.299 5.299 12 C -0.033 4.033 13 C -0.099 4.099 14 C -0.240 4.240 15 C 0.056 3.944 16 O -0.140 6.140 17 C -0.489 4.489 18 H 0.124 0.876 19 C -0.222 4.222 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.170 1.170 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.212 4.212 26 C -0.096 4.096 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.143 0.857 44 H 0.265 0.735 45 H 0.178 0.822 46 H 0.150 0.850 47 H 0.081 0.919 48 H 0.128 0.872 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.935 -30.043 0.667 32.716 hybrid contribution 0.630 0.832 -0.226 1.067 sum -12.305 -29.212 0.441 31.701 Atomic orbital electron populations 1.21800 0.95920 1.01837 1.01707 1.21535 0.95899 0.96641 1.02126 1.21643 0.95778 0.96941 1.01669 1.21570 0.95057 0.96253 1.02367 1.21604 0.95785 0.97105 1.01546 1.21552 0.95091 0.94957 1.03197 1.21327 0.93375 0.97696 1.01905 1.21734 0.97328 0.90229 1.07169 1.21826 0.81427 0.93479 0.74405 1.90704 1.56315 1.48226 1.50172 1.43278 1.07948 1.06128 1.72556 1.17450 0.97323 0.85325 1.03247 1.20871 0.95856 0.96085 0.97136 1.21141 1.03143 0.92706 1.07029 1.19868 0.93550 0.85563 0.95418 1.83955 1.44936 1.23280 1.61793 1.21924 1.04886 0.94807 1.27289 0.87582 1.26638 1.02729 0.93579 0.99245 1.70215 1.42018 0.99645 1.44247 0.84499 0.75189 0.79543 0.76773 1.16988 1.19615 1.19398 1.20272 0.96836 0.97575 1.06516 1.20859 0.99484 0.90857 0.98383 0.92336 0.92905 0.92932 0.91903 0.91860 0.92486 0.92556 0.91642 0.91560 0.92727 0.92843 0.90744 0.90590 0.93017 0.93280 0.85949 0.85739 0.73451 0.82235 0.85002 0.91900 0.87210 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.17 5.93 30.59 0.18 -0.98 16 3 C -0.12 -1.31 5.21 30.59 0.16 -1.15 16 4 C -0.11 -1.15 5.21 30.59 0.16 -0.99 16 5 C -0.12 -1.51 5.21 30.59 0.16 -1.35 16 6 C -0.11 -1.17 5.21 30.59 0.16 -1.01 16 7 C -0.10 -1.69 4.50 30.59 0.14 -1.55 16 8 C -0.13 -1.63 5.70 29.85 0.17 -1.46 16 9 C 0.50 12.13 7.67 87.65 0.67 12.80 16 10 O -0.58 -20.15 13.42 -3.05 -0.04 -20.19 16 11 N -0.65 -14.94 5.34 -303.38 -1.62 -16.56 16 12 C 0.06 2.01 6.30 38.17 0.24 2.25 16 13 C -0.08 -2.63 9.96 22.38 0.22 -2.41 16 14 C -0.22 -9.43 9.16 22.38 0.20 -9.23 16 15 C 0.11 5.47 6.65 22.59 0.15 5.62 16 16 O -0.23 -14.32 9.75 -22.78 -0.22 -14.54 16 17 C -0.41 -24.10 9.48 67.91 0.64 -23.46 16 18 H 0.11 5.57 5.20 -2.91 -0.02 5.55 16 19 C -0.02 -1.41 5.49 84.83 0.47 -0.95 16 20 N -0.92 -57.42 13.67 21.61 0.30 -57.13 16 21 Si 1.02 42.73 29.55 68.60 2.03 44.76 16 22 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 23 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 24 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 25 C -0.19 -9.02 9.98 22.37 0.22 -8.79 16 26 C -0.08 -3.04 8.69 22.38 0.19 -2.85 16 27 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 28 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 36 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.08 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.05 1.02 8.10 -2.39 -0.02 1.00 16 41 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 42 H 0.12 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 44 H 0.43 5.74 8.82 -92.71 -0.82 4.92 16 45 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 46 H 0.13 5.55 5.63 -2.91 -0.02 5.53 16 47 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 48 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 49 H 0.13 5.21 6.23 -2.91 -0.02 5.19 16 Total: -1.00 -78.12 401.99 5.41 -72.71 By element: Atomic # 1 Polarization: 27.05 SS G_CDS: 0.11 Total: 27.16 kcal Atomic # 6 Polarization: -41.07 SS G_CDS: 4.86 Total: -36.21 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -1.32 Total: -73.69 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -0.26 Total: -34.74 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -78.12 5.41 -72.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106167450.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.289 kcal (2) G-P(sol) polarization free energy of solvation -78.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds