Wall clock time and date at job start Tue Mar 31 2020 12:06:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53004 * 109.46861 * 2 1 4 4 C 1.53006 * 109.46858 * 179.97438 * 3 2 1 5 5 C 1.52999 * 109.46917 * 180.02562 * 4 3 2 6 6 C 1.53006 * 109.46917 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.46917 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47107 * 180.02562 * 7 6 5 9 9 C 1.50700 * 109.47382 * 179.97438 * 8 7 6 10 10 O 1.21287 * 119.99841 * 359.97438 * 9 8 7 11 11 N 1.34775 * 119.99999 * 179.97438 * 9 8 7 12 12 C 1.39919 * 119.99780 * 175.48810 * 11 9 8 13 13 C 1.38969 * 120.03650 * 214.84873 * 12 11 9 14 14 C 1.38158 * 120.06368 * 179.72056 * 13 12 11 15 15 C 1.38167 * 120.13972 * 0.56070 * 14 13 12 16 16 C 1.38905 * 120.07508 * 359.71704 * 15 14 13 17 17 O 1.35747 * 120.03882 * 179.97438 * 16 15 14 18 18 C 1.34831 * 116.99920 * 5.36534 * 17 16 15 19 19 H 1.08010 * 119.99664 * 354.96828 * 18 17 16 20 20 C 1.38652 * 120.00394 * 174.96131 * 18 17 16 21 21 N 1.31565 * 119.99610 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00394 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.46802 * 60.00319 * 22 20 18 24 24 H 1.48499 * 109.47270 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.46895 * 300.00250 * 22 20 18 26 26 C 1.38712 * 120.03870 * 35.12981 * 12 11 9 27 27 H 1.09005 * 109.46979 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47584 * 299.99594 * 1 2 3 29 29 H 1.09000 * 109.47547 * 59.99665 * 1 2 3 30 30 H 1.08996 * 109.47089 * 240.00410 * 2 1 3 31 31 H 1.08997 * 109.47053 * 120.00331 * 2 1 3 32 32 H 1.08996 * 109.46934 * 60.00316 * 3 2 1 33 33 H 1.08997 * 109.47558 * 300.00022 * 3 2 1 34 34 H 1.09004 * 109.46935 * 60.00131 * 4 3 2 35 35 H 1.09006 * 109.46877 * 300.00328 * 4 3 2 36 36 H 1.08996 * 109.47186 * 60.00126 * 5 4 3 37 37 H 1.08997 * 109.46789 * 299.99594 * 5 4 3 38 38 H 1.09004 * 109.46935 * 59.99786 * 6 5 4 39 39 H 1.08997 * 109.47055 * 299.99986 * 6 5 4 40 40 H 1.08996 * 109.47186 * 60.00126 * 7 6 5 41 41 H 1.09006 * 109.46876 * 299.99429 * 7 6 5 42 42 H 1.09010 * 109.46995 * 299.99873 * 8 7 6 43 43 H 1.09002 * 109.47702 * 59.99069 * 8 7 6 44 44 H 0.96997 * 120.00090 * 355.49854 * 11 9 8 45 45 H 1.07996 * 119.96735 * 359.97438 * 13 12 11 46 46 H 1.08000 * 119.92824 * 180.25956 * 14 13 12 47 47 H 1.08009 * 119.96432 * 179.74527 * 15 14 13 48 48 H 0.96999 * 119.99613 * 179.97438 * 21 20 18 49 49 H 1.08009 * 120.06693 * 359.97438 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0013 6 6 5.6100 2.8851 0.0026 7 6 6.1199 4.3276 0.0039 8 6 7.6499 4.3276 0.0045 9 6 8.1522 5.7484 0.0052 10 8 7.3641 6.6703 0.0046 11 7 9.4773 5.9947 0.0063 12 6 9.9444 7.3102 -0.0884 13 6 11.1177 7.5835 -0.7813 14 6 11.5764 8.8830 -0.8801 15 6 10.8769 9.9130 -0.2810 16 6 9.7066 9.6457 0.4178 17 8 9.0203 10.6581 1.0065 18 6 9.4658 11.9109 0.7827 19 1 10.3782 12.0683 0.2266 20 6 8.7525 12.9971 1.2661 21 7 7.6412 12.8054 1.9438 22 14 9.3692 14.7328 0.9554 23 1 9.4457 14.9763 -0.5075 24 1 8.4343 15.7081 1.5718 25 1 10.7180 14.8936 1.5552 26 6 9.2401 8.3422 0.5140 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9286 -0.8892 35 1 3.9329 0.9288 0.8909 36 1 3.7162 3.3986 0.8912 37 1 3.7170 3.3991 -0.8887 38 1 5.9740 2.3713 -0.8872 39 1 5.9725 2.3711 0.8928 40 1 5.7559 4.8408 0.8938 41 1 5.7574 4.8419 -0.8862 42 1 8.0129 3.8131 0.8944 43 1 8.0137 3.8143 -0.8856 44 1 10.1071 5.2600 0.0727 45 1 11.6692 6.7799 -1.2464 46 1 12.4862 9.0935 -1.4226 47 1 11.2403 10.9273 -0.3566 48 1 7.1424 13.5653 2.2824 49 1 8.3302 8.1318 1.0566 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000106878846.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:29 Heat of formation + Delta-G solvation = -80.152799 kcal Electronic energy + Delta-G solvation = -25086.649305 eV Core-core repulsion = 21398.942420 eV Total energy + Delta-G solvation = -3687.706885 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.14394 -38.61806 -37.18084 -36.50329 -35.01557 -34.02263 -32.25147 -32.19196 -29.69231 -28.96501 -28.01502 -25.42698 -25.05981 -22.78054 -21.86315 -21.35335 -21.21617 -20.85881 -19.95414 -18.17477 -17.34745 -16.62639 -16.46946 -15.81522 -15.54684 -15.03165 -14.89938 -14.48151 -14.26789 -14.17023 -13.89082 -13.87642 -13.53311 -13.47788 -12.91045 -12.86929 -12.59074 -12.43679 -12.19691 -11.87537 -11.79156 -11.69350 -11.45163 -11.38854 -11.19585 -11.11103 -11.10327 -10.96651 -10.81276 -10.74730 -10.64993 -10.57307 -10.46183 -9.73516 -9.62331 -9.12400 -8.78088 -7.66593 -7.15413 -6.38726 -3.98116 2.04963 2.37209 2.91847 3.16070 3.18326 3.20607 3.30310 4.01570 4.32394 4.55941 4.58887 4.68206 4.74610 4.76900 4.79880 4.97701 5.02882 5.15362 5.19188 5.20780 5.31482 5.40277 5.42049 5.47188 5.48027 5.54494 5.64955 5.65721 5.73799 5.75087 5.76334 5.82646 5.86238 5.95638 5.98791 6.10417 6.12719 6.18344 6.25255 6.30166 6.42008 6.74395 6.92422 7.06765 7.11623 7.37431 7.51182 7.74877 7.83611 8.05939 8.42741 9.05908 9.77476 10.79113 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.001880 C = 0.001689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.990060 B =14889.846270 C =16573.066830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.122 4.122 6 C -0.118 4.118 7 C -0.107 4.107 8 C -0.137 4.137 9 C 0.502 3.498 10 O -0.509 6.509 11 N -0.673 5.673 12 C 0.173 3.827 13 C -0.237 4.237 14 C -0.059 4.059 15 C -0.246 4.246 16 C 0.166 3.834 17 O -0.174 6.174 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.942 3.058 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.187 4.187 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.405 0.595 45 H 0.107 0.893 46 H 0.111 0.889 47 H 0.127 0.873 48 H 0.270 0.730 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.622 -23.969 -4.450 24.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.160 4.160 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.156 4.156 7 C -0.145 4.145 8 C -0.177 4.177 9 C 0.289 3.711 10 O -0.383 6.383 11 N -0.318 5.318 12 C 0.080 3.920 13 C -0.258 4.258 14 C -0.078 4.078 15 C -0.266 4.266 16 C 0.111 3.889 17 O -0.077 6.077 18 C -0.469 4.469 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.208 4.208 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.240 0.760 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.145 0.855 48 H 0.080 0.920 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.639 -23.183 -4.184 24.010 hybrid contribution 0.794 0.506 -0.209 0.964 sum -3.845 -22.677 -4.393 23.417 Atomic orbital electron populations 1.21787 0.96003 1.01472 1.01872 1.21541 0.95794 0.97108 1.01847 1.21648 0.95602 0.96568 1.02189 1.21615 0.95234 0.97007 1.01854 1.21608 0.95327 0.96539 1.02467 1.21605 0.95566 0.96545 1.01857 1.21378 0.92587 0.96531 1.04029 1.21682 0.98296 0.93492 1.04215 1.20899 0.82012 0.91986 0.76240 1.90797 1.54920 1.46035 1.46543 1.43460 1.07514 1.07362 1.73450 1.17222 0.94563 0.83048 0.97138 1.20274 0.99900 0.96943 1.08670 1.20499 0.98067 0.91915 0.97314 1.21175 0.98539 1.00054 1.06822 1.19150 0.90306 0.89038 0.90369 1.83990 1.49426 1.13675 1.60595 1.21298 1.09202 0.79353 1.37012 0.89064 1.25303 0.95440 0.99548 0.96263 1.70051 1.14300 1.31925 1.33273 0.85775 0.78544 0.80137 0.78912 1.19508 1.20309 1.19519 1.20172 1.03606 0.89873 1.07188 0.92918 0.92740 0.92765 0.92179 0.92158 0.91984 0.92010 0.92161 0.92135 0.91812 0.91865 0.92070 0.92027 0.90938 0.91044 0.88942 0.88964 0.76040 0.87446 0.87089 0.85485 0.91996 0.84883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.13 -0.77 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.83 5.21 -26.73 -0.14 -0.97 16 4 C -0.12 -0.82 5.21 -26.73 -0.14 -0.96 16 5 C -0.12 -0.97 5.21 -26.73 -0.14 -1.11 16 6 C -0.12 -0.93 5.21 -26.73 -0.14 -1.07 16 7 C -0.11 -1.13 4.50 -26.73 -0.12 -1.25 16 8 C -0.14 -1.33 5.70 -27.89 -0.16 -1.49 16 9 C 0.50 7.62 7.67 -10.99 -0.08 7.54 16 10 O -0.51 -10.46 13.42 5.55 0.07 -10.39 16 11 N -0.67 -9.76 5.34 -9.88 -0.05 -9.81 16 12 C 0.17 3.31 6.30 -83.72 -0.53 2.78 16 13 C -0.24 -4.13 9.96 -39.34 -0.39 -4.52 16 14 C -0.06 -1.10 10.03 -39.64 -0.40 -1.50 16 15 C -0.25 -5.53 9.17 -39.36 -0.36 -5.89 16 16 C 0.17 4.27 6.64 -39.14 -0.26 4.01 16 17 O -0.17 -5.23 9.76 0.05 0.00 -5.23 16 18 C -0.39 -11.34 9.49 30.89 0.29 -11.05 16 19 H 0.09 2.41 5.20 -52.48 -0.27 2.14 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 21 N -0.86 -26.09 13.67 55.48 0.76 -25.33 16 22 Si 0.94 21.00 29.55 -169.99 -5.02 15.98 16 23 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 26 C -0.19 -4.41 8.64 -39.21 -0.34 -4.75 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 42 H 0.09 0.70 8.14 -51.92 -0.42 0.27 16 43 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.40 4.06 8.82 -40.82 -0.36 3.70 16 45 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 46 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 47 H 0.13 2.82 5.63 -52.48 -0.30 2.52 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 49 H 0.13 3.37 6.23 -52.48 -0.33 3.04 16 LS Contribution 401.99 15.07 6.06 6.06 Total: -1.00 -34.38 401.99 -9.39 -43.78 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -8.42 Total: 5.60 kcal Atomic # 6 Polarization: -17.86 SS G_CDS: -2.79 Total: -20.65 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.71 Total: -35.14 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: 0.08 Total: -15.62 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.38 -9.39 -43.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000106878846.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.375 kcal (2) G-P(sol) polarization free energy of solvation -34.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds