Wall clock time and date at job start Tue Mar 31 2020 12:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52994 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47129 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08992 * 109.46819 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46549 * 300.00085 * 1 2 3 30 30 H 1.08993 * 109.46803 * 239.99904 * 2 1 3 31 31 H 1.09003 * 109.47219 * 119.99883 * 2 1 3 32 32 H 1.08999 * 109.46806 * 59.99841 * 3 2 1 33 33 H 1.09003 * 109.46975 * 300.00032 * 3 2 1 34 34 H 1.08998 * 109.47520 * 59.99707 * 4 3 2 35 35 H 1.09003 * 109.47243 * 299.99704 * 4 3 2 36 36 H 1.08993 * 109.47356 * 60.00078 * 5 4 3 37 37 H 1.08998 * 109.47029 * 299.99402 * 5 4 3 38 38 H 1.09002 * 109.46549 * 59.99915 * 6 5 4 39 39 H 1.08998 * 109.47227 * 300.00354 * 6 5 4 40 40 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 41 41 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 42 42 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 43 43 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 44 44 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 6 6.1201 4.3274 -0.0026 8 6 7.6271 4.3273 -0.0019 9 8 8.2335 3.2771 -0.0011 10 7 8.3011 5.4946 -0.0024 11 6 9.7661 5.4946 -0.0023 12 6 10.2684 6.9154 -0.0022 13 6 10.4991 7.5666 -1.2005 14 6 10.9606 8.8702 -1.2046 15 6 11.1863 9.5281 -0.0113 16 6 10.9611 8.8751 1.1933 17 8 11.1878 9.5171 2.3677 18 6 11.7447 10.7430 2.2977 19 1 11.9145 11.2048 1.3363 20 6 12.0995 11.4107 3.4600 21 7 11.8931 10.8479 4.6310 22 14 12.8717 13.1088 3.3629 23 1 12.9964 13.5153 1.9400 24 1 12.0142 14.0844 4.0826 25 1 14.2180 13.0769 3.9888 26 6 10.4982 7.5655 1.1940 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 3.7171 3.3990 0.8886 37 1 3.7164 3.3984 -0.8913 38 1 5.9734 2.3707 -0.8911 39 1 5.9735 2.3715 0.8889 40 1 5.7568 4.8420 0.8871 41 1 5.7568 4.8405 -0.8929 42 1 7.8160 6.3346 -0.0027 43 1 10.1293 4.9804 -0.8922 44 1 10.1293 4.9810 0.8878 45 1 10.3185 7.0560 -2.1349 46 1 11.1402 9.3759 -2.1418 47 1 11.5418 10.5479 -0.0150 48 1 12.1416 11.3149 5.4440 49 1 10.3186 7.0562 2.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000113105642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:30 Heat of formation + Delta-G solvation = -86.334677 kcal Electronic energy + Delta-G solvation = -24787.278563 eV Core-core repulsion = 21099.303612 eV Total energy + Delta-G solvation = -3687.974951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.80259 -39.03775 -37.06403 -36.75170 -34.62446 -34.31783 -32.35943 -31.40470 -30.54208 -29.16733 -27.38080 -25.79620 -25.05802 -23.19243 -21.73854 -21.34531 -21.19809 -20.81520 -20.19582 -17.90455 -17.23057 -16.65400 -16.47926 -15.77791 -15.73537 -15.20505 -14.87811 -14.46729 -14.42640 -14.34084 -13.99420 -13.68263 -13.63950 -13.43894 -13.28137 -12.73158 -12.56556 -12.39592 -12.35174 -12.29539 -11.99602 -11.68751 -11.52742 -11.40506 -11.35866 -11.17718 -10.97448 -10.91009 -10.84393 -10.75538 -10.72511 -10.71017 -10.47975 -9.82635 -9.42917 -8.97213 -8.91431 -8.26193 -7.35309 -6.51254 -4.10834 1.88645 2.24463 2.70158 3.07675 3.09849 3.15344 3.39697 3.90719 4.33138 4.48648 4.54608 4.64801 4.76437 4.77208 4.84407 4.93046 5.01999 5.04857 5.10502 5.23785 5.27647 5.30110 5.39069 5.42938 5.52422 5.55538 5.58621 5.61584 5.70407 5.72947 5.75019 5.82688 5.84652 5.89353 5.92932 6.01980 6.05719 6.10824 6.18812 6.23034 6.50185 6.53507 6.79386 6.97533 7.16616 7.25029 7.33409 7.58709 7.69541 7.92917 8.28579 8.94220 9.62658 10.66546 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.001643 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.002563 B =17042.377087 C =17802.745447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.104 4.104 7 C -0.141 4.141 8 C 0.509 3.491 9 O -0.548 6.548 10 N -0.723 5.723 11 C 0.167 3.833 12 C -0.073 4.073 13 C -0.196 4.196 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.150 3.850 17 O -0.177 6.177 18 C -0.393 4.393 19 H 0.093 0.907 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.275 1.275 26 C -0.171 4.171 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.403 0.597 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.128 0.872 48 H 0.270 0.730 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.557 -13.491 -10.444 23.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.158 4.158 6 C -0.142 4.142 7 C -0.181 4.181 8 C 0.296 3.704 9 O -0.426 6.426 10 N -0.374 5.374 11 C 0.044 3.956 12 C -0.074 4.074 13 C -0.215 4.215 14 C -0.094 4.094 15 C -0.245 4.245 16 C 0.097 3.903 17 O -0.080 6.080 18 C -0.470 4.470 19 H 0.110 0.890 20 C -0.164 4.164 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 C -0.191 4.191 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.111 0.889 41 H 0.110 0.890 42 H 0.238 0.762 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.145 0.855 48 H 0.080 0.920 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.108 -14.253 -9.945 23.696 hybrid contribution 0.280 1.478 -0.068 1.505 sum -15.828 -12.776 -10.013 22.672 Atomic orbital electron populations 1.21785 0.96023 1.01502 1.01770 1.21549 0.95740 0.97113 1.01998 1.21636 0.95575 0.96621 1.02005 1.21602 0.95098 0.96878 1.02250 1.21627 0.95216 0.96903 1.02069 1.21342 0.94515 0.94732 1.03569 1.21702 0.91943 1.00069 1.04431 1.20757 0.90272 0.83589 0.75827 1.90686 1.70608 1.31378 1.49909 1.46194 1.07431 1.08774 1.74999 1.20139 0.79283 0.93720 1.02430 1.19283 1.00800 0.94211 0.93092 1.20478 1.08834 0.95894 0.96298 1.20745 0.97422 0.94319 0.96922 1.21243 1.09506 1.01709 0.92085 1.19325 0.92988 0.91369 0.86653 1.83981 1.69033 1.30279 1.24719 1.21376 1.40152 0.90664 0.94763 0.88976 1.25297 0.96998 0.99981 0.94173 1.70042 1.44066 1.37895 0.97502 0.85644 0.78749 0.80157 0.78856 1.19075 1.20109 1.20080 1.20084 1.08258 0.93274 0.97470 0.92811 0.92897 0.92785 0.92112 0.92075 0.92044 0.92100 0.91980 0.91920 0.91910 0.91990 0.91308 0.91212 0.88865 0.89002 0.76237 0.91049 0.90947 0.87530 0.87281 0.85451 0.91987 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 37.16 0.37 -0.46 16 2 C -0.13 -0.75 5.93 -26.73 -0.16 -0.91 16 3 C -0.12 -0.75 5.21 -26.73 -0.14 -0.89 16 4 C -0.12 -0.84 5.21 -26.73 -0.14 -0.98 16 5 C -0.12 -0.86 5.21 -26.73 -0.14 -1.00 16 6 C -0.10 -0.95 4.50 -26.73 -0.12 -1.07 16 7 C -0.14 -1.28 5.70 -27.88 -0.16 -1.44 16 8 C 0.51 6.63 7.83 -10.98 -0.09 6.54 16 9 O -0.55 -9.18 15.98 5.56 0.09 -9.10 16 10 N -0.72 -9.24 5.55 -61.47 -0.34 -9.58 16 11 C 0.17 2.46 5.80 -5.19 -0.03 2.43 16 12 C -0.07 -1.23 5.25 -104.65 -0.55 -1.78 16 13 C -0.20 -3.17 9.70 -39.53 -0.38 -3.55 16 14 C -0.08 -1.31 10.04 -39.61 -0.40 -1.71 16 15 C -0.23 -4.69 9.17 -39.40 -0.36 -5.05 16 16 C 0.15 3.49 6.65 -39.11 -0.26 3.23 16 17 O -0.18 -4.91 9.76 0.05 0.00 -4.91 16 18 C -0.39 -10.73 9.49 30.89 0.29 -10.43 16 19 H 0.09 2.32 5.21 -52.49 -0.27 2.05 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 22 Si 0.94 20.08 29.55 -169.99 -5.02 15.05 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.17 -3.44 9.65 -39.39 -0.38 -3.82 16 27 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 39 H 0.07 0.73 8.10 -51.93 -0.42 0.31 16 40 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 41 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.40 4.51 8.46 -40.82 -0.35 4.17 16 43 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 44 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 45 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 46 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 47 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 48 H 0.27 7.12 8.31 -40.82 -0.34 6.79 16 49 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 406.58 15.07 6.13 6.13 Total: -1.00 -31.16 406.58 -9.62 -40.79 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: -8.50 Total: 5.57 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -2.74 Total: -19.91 kcal Atomic # 7 Polarization: -34.04 SS G_CDS: 0.42 Total: -33.62 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: 0.09 Total: -14.01 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.16 -9.62 -40.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.548 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds