Wall clock time and date at job start Tue Mar 31 2020 12:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47129 * 2 1 4 4 C 1.52994 * 109.46812 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.53009 * 109.47129 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47130 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46849 * 179.97438 * 7 6 5 9 9 O 1.21274 * 120.00375 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99813 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00093 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47192 * 180.02562 * 11 10 8 13 13 C 1.38328 * 119.96230 * 269.98024 * 12 11 10 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47010 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.46908 * 119.99967 * 22 20 18 25 25 H 1.48504 * 109.47373 * 240.00300 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99825 * 12 11 10 27 27 H 1.08992 * 109.46819 * 59.99829 * 1 2 3 28 28 H 1.09002 * 109.46736 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46549 * 300.00085 * 1 2 3 30 30 H 1.08993 * 109.46803 * 239.99904 * 2 1 3 31 31 H 1.09003 * 109.47219 * 119.99883 * 2 1 3 32 32 H 1.08999 * 109.46806 * 59.99841 * 3 2 1 33 33 H 1.09003 * 109.46975 * 300.00032 * 3 2 1 34 34 H 1.08998 * 109.47520 * 59.99707 * 4 3 2 35 35 H 1.09003 * 109.47243 * 299.99704 * 4 3 2 36 36 H 1.08993 * 109.47356 * 60.00078 * 5 4 3 37 37 H 1.08998 * 109.47029 * 299.99402 * 5 4 3 38 38 H 1.09002 * 109.46549 * 59.99915 * 6 5 4 39 39 H 1.08998 * 109.47227 * 300.00354 * 6 5 4 40 40 H 1.09008 * 109.46644 * 60.00251 * 7 6 5 41 41 H 1.08998 * 109.47635 * 300.00447 * 7 6 5 42 42 H 0.97004 * 119.99718 * 0.02562 * 10 8 7 43 43 H 1.09002 * 109.46490 * 60.00223 * 11 10 8 44 44 H 1.08992 * 109.46880 * 300.00477 * 11 10 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08006 * 120.03715 * 180.31908 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0800 2.8849 -0.0013 6 6 5.6101 2.8849 -0.0013 7 6 6.1201 4.3274 -0.0026 8 6 7.6271 4.3273 -0.0019 9 8 8.2335 3.2771 -0.0011 10 7 8.3011 5.4946 -0.0024 11 6 9.7661 5.4946 -0.0023 12 6 10.2684 6.9154 -0.0022 13 6 10.4991 7.5666 -1.2005 14 6 10.9606 8.8702 -1.2046 15 6 11.1863 9.5281 -0.0113 16 6 10.9611 8.8751 1.1933 17 8 11.1878 9.5171 2.3677 18 6 11.7447 10.7430 2.2977 19 1 11.9145 11.2048 1.3363 20 6 12.0995 11.4107 3.4600 21 7 11.8931 10.8479 4.6310 22 14 12.8717 13.1088 3.3629 23 1 12.9964 13.5153 1.9400 24 1 12.0142 14.0844 4.0826 25 1 14.2180 13.0769 3.9888 26 6 10.4982 7.5655 1.1940 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9285 0.8892 36 1 3.7171 3.3990 0.8886 37 1 3.7164 3.3984 -0.8913 38 1 5.9734 2.3707 -0.8911 39 1 5.9735 2.3715 0.8889 40 1 5.7568 4.8420 0.8871 41 1 5.7568 4.8405 -0.8929 42 1 7.8160 6.3346 -0.0027 43 1 10.1293 4.9804 -0.8922 44 1 10.1293 4.9810 0.8878 45 1 10.3185 7.0560 -2.1349 46 1 11.1402 9.3759 -2.1418 47 1 11.5418 10.5479 -0.0150 48 1 12.1416 11.3149 5.4440 49 1 10.3186 7.0562 2.1293 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000113105642.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:29 Heat of formation + Delta-G solvation = -103.528130 kcal Electronic energy + Delta-G solvation = -24788.024127 eV Core-core repulsion = 21099.303612 eV Total energy + Delta-G solvation = -3688.720515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.06507 -40.52901 -38.50625 -37.52558 -35.77890 -35.05932 -34.29225 -32.47784 -31.53167 -30.74244 -28.24279 -27.40780 -26.44494 -23.92734 -23.26497 -22.43190 -21.86746 -21.81500 -21.17821 -19.60603 -18.89459 -17.83427 -17.17506 -16.96827 -16.76419 -16.57925 -16.25162 -16.08200 -15.52277 -15.43678 -15.07804 -14.86314 -14.76583 -14.38869 -14.12976 -14.09890 -13.92243 -13.64829 -13.32392 -13.15830 -13.01119 -12.89936 -12.74889 -12.56320 -12.36770 -12.28552 -12.09117 -12.08417 -11.95190 -11.73213 -11.47076 -11.35070 -11.29509 -11.22427 -10.91992 -10.80528 -10.10738 -9.75924 -9.04378 -8.47647 -6.16334 0.37949 0.69423 1.35821 1.43570 1.53854 1.67275 2.16898 2.30418 2.85649 3.15089 3.39562 3.73213 3.80959 3.88454 4.01357 4.08239 4.18213 4.21293 4.24849 4.29739 4.39712 4.46166 4.51644 4.52269 4.65640 4.71081 4.72223 4.77097 4.79748 4.90658 5.00233 5.00925 5.05101 5.05581 5.11407 5.16229 5.24337 5.24653 5.32832 5.33059 5.39572 5.48235 5.53768 5.58371 5.61494 5.69679 5.70878 6.01062 6.15623 6.57354 6.97285 7.26029 7.77256 8.75614 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020937 B = 0.001643 C = 0.001572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.002563 B =17042.377087 C =17802.745447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.121 4.121 5 C -0.114 4.114 6 C -0.101 4.101 7 C -0.134 4.134 8 C 0.507 3.493 9 O -0.589 6.589 10 N -0.717 5.717 11 C 0.173 3.827 12 C -0.059 4.059 13 C -0.169 4.169 14 C -0.069 4.069 15 C -0.234 4.234 16 C 0.113 3.887 17 O -0.233 6.233 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.022 4.022 21 N -0.921 5.921 22 Si 1.018 2.982 23 H -0.249 1.249 24 H -0.269 1.269 25 H -0.271 1.271 26 C -0.182 4.182 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.050 0.950 40 H 0.110 0.890 41 H 0.120 0.880 42 H 0.413 0.587 43 H 0.084 0.916 44 H 0.059 0.941 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.121 0.879 48 H 0.272 0.728 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.739 -13.190 -13.642 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.158 4.158 5 C -0.151 4.151 6 C -0.139 4.139 7 C -0.173 4.173 8 C 0.295 3.705 9 O -0.470 6.470 10 N -0.369 5.369 11 C 0.049 3.951 12 C -0.060 4.060 13 C -0.187 4.187 14 C -0.087 4.087 15 C -0.254 4.254 16 C 0.062 3.938 17 O -0.140 6.140 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.220 4.220 21 N -0.559 5.559 22 Si 0.837 3.163 23 H -0.173 1.173 24 H -0.194 1.194 25 H -0.196 1.196 26 C -0.202 4.202 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.129 0.871 41 H 0.138 0.862 42 H 0.249 0.751 43 H 0.102 0.898 44 H 0.077 0.923 45 H 0.166 0.834 46 H 0.167 0.833 47 H 0.138 0.862 48 H 0.081 0.919 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -17.321 -13.964 -13.200 25.870 hybrid contribution 0.558 1.113 0.672 1.415 sum -16.764 -12.851 -12.528 24.559 Atomic orbital electron populations 1.21783 0.95536 1.01806 1.01927 1.21560 0.96191 0.96987 1.01823 1.21604 0.94879 0.96788 1.02225 1.21594 0.95688 0.96810 1.01757 1.21575 0.93498 0.97106 1.02932 1.21298 0.95936 0.94585 1.02069 1.21753 0.88651 1.00392 1.06532 1.21465 0.91833 0.82701 0.74467 1.90675 1.71738 1.32787 1.51766 1.46114 1.06558 1.09456 1.74767 1.20002 0.80634 0.91960 1.02500 1.19462 0.99414 0.94903 0.92186 1.20993 1.05121 0.95248 0.97383 1.21164 0.95800 0.94669 0.97021 1.21374 1.09700 1.01709 0.92588 1.19854 0.94627 0.92606 0.86685 1.83946 1.71725 1.31140 1.27199 1.21869 1.40337 0.91073 0.95585 0.87875 1.26577 0.97429 1.04490 0.93497 1.70189 1.46941 1.40299 0.98447 0.84534 0.77624 0.74398 0.79695 1.17258 1.19390 1.19570 1.20209 1.08733 0.92595 0.98616 0.92537 0.92570 0.92729 0.92173 0.92416 0.91972 0.91655 0.92290 0.92688 0.91305 0.90752 0.92505 0.93147 0.87142 0.86235 0.75059 0.89751 0.92295 0.83423 0.83287 0.86151 0.91889 0.87578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.91 71.99 0.71 -0.76 16 2 C -0.13 -1.40 5.93 30.60 0.18 -1.22 16 3 C -0.12 -1.29 5.21 30.59 0.16 -1.14 16 4 C -0.12 -1.54 5.21 30.59 0.16 -1.38 16 5 C -0.11 -1.39 5.21 30.60 0.16 -1.23 16 6 C -0.10 -1.71 4.50 30.60 0.14 -1.57 16 7 C -0.13 -2.08 5.70 29.85 0.17 -1.91 16 8 C 0.51 12.29 7.83 87.66 0.69 12.98 16 9 O -0.59 -19.32 15.98 -3.01 -0.05 -19.37 16 10 N -0.72 -16.71 5.55 -466.79 -2.59 -19.30 16 11 C 0.17 4.73 5.80 85.63 0.50 5.23 16 12 C -0.06 -1.86 5.25 -19.88 -0.10 -1.96 16 13 C -0.17 -4.72 9.70 22.30 0.22 -4.50 16 14 C -0.07 -2.12 10.04 22.25 0.22 -1.90 16 15 C -0.23 -9.56 9.17 22.39 0.21 -9.36 16 16 C 0.11 5.38 6.65 22.58 0.15 5.53 16 17 O -0.23 -13.76 9.76 -22.74 -0.22 -13.98 16 18 C -0.41 -23.49 9.49 67.92 0.64 -22.84 16 19 H 0.10 5.34 5.21 -2.91 -0.02 5.33 16 20 C -0.02 -1.25 5.49 84.83 0.47 -0.79 16 21 N -0.92 -55.95 13.67 21.61 0.30 -55.65 16 22 Si 1.02 42.03 29.55 68.60 2.03 44.05 16 23 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 24 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 25 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 26 C -0.18 -7.42 9.65 22.39 0.22 -7.20 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 39 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 40 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.41 8.08 8.46 -92.71 -0.78 7.30 16 43 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 44 H 0.06 1.80 8.08 -2.39 -0.02 1.78 16 45 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 46 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 47 H 0.12 5.02 5.64 -2.91 -0.02 5.00 16 48 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 49 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -72.82 406.58 4.48 -68.35 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: 0.13 Total: 29.93 kcal Atomic # 6 Polarization: -38.91 SS G_CDS: 4.88 Total: -34.03 kcal Atomic # 7 Polarization: -72.66 SS G_CDS: -2.29 Total: -74.95 kcal Atomic # 8 Polarization: -33.08 SS G_CDS: -0.27 Total: -33.35 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Total: -72.82 4.48 -68.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000113105642.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.182 kcal (2) G-P(sol) polarization free energy of solvation -72.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds