Wall clock time and date at job start Tue Mar 31 2020 13:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46779 * 2 1 4 4 C 1.52996 * 109.47042 * 119.99581 * 2 1 3 5 5 C 1.53002 * 109.46969 * 65.00294 * 4 2 1 6 6 O 1.42905 * 109.47079 * 179.97438 * 5 4 2 7 7 C 1.35713 * 116.99825 * 179.97438 * 6 5 4 8 8 C 1.38997 * 119.91028 * 359.73251 * 7 6 5 9 9 C 1.37702 * 120.08428 * 179.72218 * 8 7 6 10 10 C 1.39735 * 119.90973 * 0.56811 * 9 8 7 11 11 C 1.47603 * 120.08460 * 179.67927 * 10 9 8 12 12 O 1.21583 * 120.00053 * 180.02562 * 11 10 9 13 13 N 1.34775 * 120.00044 * 0.02642 * 11 10 9 14 14 C 1.46507 * 120.00009 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47263 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47053 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.47246 * 180.02562 * 16 15 14 18 18 H 1.08004 * 119.99684 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00144 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99771 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99820 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47189 * 59.99584 * 21 19 17 23 23 H 1.48498 * 109.47037 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.46884 * 299.99577 * 21 19 17 25 25 C 1.39733 * 119.82595 * 359.70296 * 10 9 8 26 26 C 1.37691 * 119.91066 * 0.02562 * 25 10 9 27 27 H 1.09006 * 109.46661 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47607 * 299.99935 * 1 2 3 29 29 H 1.09002 * 109.47074 * 60.00287 * 1 2 3 30 30 H 1.08993 * 109.47270 * 240.00037 * 2 1 3 31 31 H 1.08998 * 109.47077 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47083 * 299.99708 * 3 2 1 33 33 H 1.09006 * 109.47416 * 59.99832 * 3 2 1 34 34 H 1.09004 * 109.47298 * 305.00515 * 4 2 1 35 35 H 1.09004 * 109.47552 * 185.00387 * 4 2 1 36 36 H 1.09004 * 109.46930 * 59.99996 * 5 4 2 37 37 H 1.09000 * 109.47312 * 299.99939 * 5 4 2 38 38 H 1.07996 * 119.95973 * 359.97438 * 8 7 6 39 39 H 1.08000 * 120.04534 * 180.27239 * 9 8 7 40 40 H 0.96994 * 120.00223 * 359.97438 * 13 11 10 41 41 H 1.09006 * 109.46739 * 300.00034 * 14 13 11 42 42 H 1.09003 * 109.47020 * 59.99378 * 14 13 11 43 43 H 1.08993 * 109.46947 * 300.00098 * 15 14 13 44 44 H 1.08998 * 109.46689 * 59.99902 * 15 14 13 45 45 H 1.09001 * 109.47263 * 299.99651 * 16 15 14 46 46 H 1.08997 * 109.46878 * 60.00206 * 16 15 14 47 47 H 0.96995 * 119.99422 * 179.97438 * 20 19 17 48 48 H 1.08003 * 120.04423 * 179.97438 * 25 10 9 49 49 H 1.08004 * 119.95721 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.6352 -2.1954 1.1880 6 8 2.1121 -2.8691 2.3546 7 6 1.8353 -4.1937 2.4575 8 6 1.1127 -4.8307 1.4553 9 6 0.8347 -6.1758 1.5533 10 6 1.2699 -6.8979 2.6676 11 6 0.9679 -8.3383 2.7800 12 8 1.3469 -8.9650 3.7505 13 7 0.2722 -8.9589 1.8067 14 6 -0.0270 -10.3888 1.9179 15 6 -0.8215 -10.8405 0.6909 16 6 -1.1333 -12.3339 0.8068 17 6 -1.9154 -12.7791 -0.4021 18 1 -2.1653 -12.0678 -1.1755 19 6 -2.3126 -14.0941 -0.5203 20 7 -2.0087 -14.9600 0.4217 21 14 -3.2826 -14.6457 -2.0184 22 1 -2.4811 -14.4014 -3.2445 23 1 -3.5863 -16.0949 -1.9054 24 1 -4.5521 -13.8790 -2.0959 25 6 1.9911 -6.2526 3.6756 26 6 2.2698 -4.9085 3.5675 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1263 -0.6442 1.2953 36 1 2.0699 -2.6549 0.3003 37 1 0.5489 -2.2724 1.1421 38 1 0.7723 -4.2708 0.5968 39 1 0.2770 -6.6710 0.7721 40 1 -0.0305 -8.4589 1.0326 41 1 0.9048 -10.9515 1.9753 42 1 -0.6156 -10.5679 2.8177 43 1 -1.7531 -10.2778 0.6339 44 1 -0.2331 -10.6613 -0.2090 45 1 -0.2014 -12.8964 0.8635 46 1 -1.7215 -12.5134 1.7067 47 1 -2.2885 -15.8850 0.3387 48 1 2.3288 -6.8072 4.5386 49 1 2.8269 -4.4089 4.3464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171507863.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:20:50 Heat of formation + Delta-G solvation = -87.453343 kcal Electronic energy + Delta-G solvation = -25022.451827 eV Core-core repulsion = 21334.428367 eV Total energy + Delta-G solvation = -3688.023460 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68287 -39.52030 -37.73249 -36.63554 -35.41559 -33.37922 -31.84493 -31.09465 -30.79239 -29.53367 -27.72900 -26.72862 -24.67607 -23.79975 -22.96033 -21.98306 -20.74899 -20.53796 -20.04643 -18.65075 -17.47578 -16.73708 -16.60305 -16.24991 -15.46980 -15.32046 -15.25476 -14.96889 -14.56238 -14.46717 -14.24478 -13.95393 -13.94171 -13.65351 -13.46530 -13.05518 -12.74950 -12.62669 -12.28636 -12.26344 -12.19578 -11.84533 -11.73005 -11.49029 -11.41980 -11.29709 -11.07155 -10.93928 -10.88386 -10.72669 -10.63152 -9.94422 -9.86847 -9.39433 -9.36245 -9.13293 -8.84388 -8.46548 -8.37124 -6.01811 -4.05082 0.73362 1.05474 2.69770 2.85840 3.31683 3.36127 3.37068 3.40670 3.74370 4.20829 4.23587 4.35809 4.41946 4.44095 4.52008 4.59294 4.76253 4.78901 4.82497 4.97974 5.06187 5.09883 5.13053 5.23764 5.30408 5.33344 5.33829 5.42613 5.45710 5.61309 5.63759 5.72694 5.74285 5.78007 5.79436 5.86995 5.96703 6.15866 6.17249 6.37640 6.48496 6.59559 6.83023 6.99735 7.00537 7.63087 7.70956 7.76038 7.96719 8.36140 8.40246 9.01260 9.58996 11.09404 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016118 B = 0.001787 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.823085 B =15668.646628 C =17282.309071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.115 4.115 5 C 0.055 3.945 6 O -0.313 6.313 7 C 0.152 3.848 8 C -0.218 4.218 9 C -0.044 4.044 10 C -0.169 4.169 11 C 0.554 3.446 12 O -0.544 6.544 13 N -0.722 5.722 14 C 0.116 3.884 15 C -0.121 4.121 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.021 4.021 26 C -0.162 4.162 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.133 0.867 39 H 0.131 0.869 40 H 0.396 0.604 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.262 0.738 48 H 0.144 0.856 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 32.954 0.622 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.152 4.152 5 C -0.020 4.020 6 O -0.226 6.226 7 C 0.106 3.894 8 C -0.236 4.236 9 C -0.063 4.063 10 C -0.172 4.172 11 C 0.342 3.658 12 O -0.423 6.423 13 N -0.373 5.373 14 C -0.006 4.006 15 C -0.159 4.159 16 C -0.014 4.014 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.039 4.039 26 C -0.180 4.180 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.231 0.769 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.071 0.929 48 H 0.162 0.838 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.633 32.414 1.488 33.577 hybrid contribution -0.877 -0.232 -1.484 1.739 sum 7.756 32.182 0.004 33.104 Atomic orbital electron populations 1.21958 0.94908 1.02053 1.02237 1.21050 0.96169 0.96543 0.97514 1.21824 1.01136 0.95382 1.02098 1.21622 1.02287 0.92179 0.99125 1.22989 0.99363 0.92990 0.86680 1.86018 1.74009 1.19122 1.43458 1.19246 0.93204 0.82830 0.94139 1.21157 1.05675 0.96042 1.00760 1.21141 0.95678 0.93348 0.96142 1.19970 1.05557 0.94147 0.97555 1.18161 0.78285 0.86505 0.82890 1.90771 1.53013 1.66996 1.31471 1.46134 1.56049 1.11898 1.23198 1.21678 1.00240 0.78277 1.00428 1.21894 0.98119 1.01141 0.94765 1.19028 0.97049 0.87855 0.97454 1.21167 1.35015 0.94435 1.05609 0.92710 1.25025 0.96183 0.96841 0.96363 1.69954 1.46363 1.03615 1.33268 0.86641 0.80465 0.77559 0.83213 1.20262 1.21252 1.20269 1.21105 0.92584 0.92827 0.97424 1.20404 1.05678 0.93781 0.98152 0.92454 0.92355 0.92354 0.90824 0.92478 0.92350 0.92465 0.90659 0.90686 0.91783 0.91480 0.84968 0.85134 0.76892 0.91591 0.91596 0.92721 0.92724 0.96224 0.96226 0.92866 0.83848 0.84548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 8.95 37.16 0.33 -0.30 16 2 C -0.09 -0.39 2.92 -90.62 -0.26 -0.65 16 3 C -0.15 -0.55 9.19 37.16 0.34 -0.21 16 4 C -0.11 -0.58 5.05 -26.73 -0.14 -0.71 16 5 C 0.05 0.34 4.49 37.16 0.17 0.50 16 6 O -0.31 -2.83 10.12 -18.84 -0.19 -3.02 16 7 C 0.15 1.50 6.70 -39.02 -0.26 1.23 16 8 C -0.22 -1.97 9.01 -39.50 -0.36 -2.33 16 9 C -0.04 -0.45 9.53 -39.22 -0.37 -0.82 16 10 C -0.17 -2.13 5.87 -104.96 -0.62 -2.75 16 11 C 0.55 8.76 7.76 -12.44 -0.10 8.66 16 12 O -0.54 -10.57 16.34 5.29 0.09 -10.49 16 13 N -0.72 -10.74 5.51 -61.32 -0.34 -11.07 16 14 C 0.12 2.08 5.67 -4.04 -0.02 2.06 16 15 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 16 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 17 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 18 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 21 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 C -0.02 -0.24 9.58 -39.22 -0.38 -0.61 16 26 C -0.16 -1.63 9.97 -39.50 -0.39 -2.02 16 27 H 0.06 0.23 6.57 -51.93 -0.34 -0.11 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.06 0.35 7.67 -51.93 -0.40 -0.05 16 37 H 0.07 0.37 6.06 -51.93 -0.31 0.06 16 38 H 0.13 0.89 6.28 -52.49 -0.33 0.56 16 39 H 0.13 1.05 6.39 -52.49 -0.34 0.72 16 40 H 0.40 4.71 6.49 -40.82 -0.27 4.44 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.14 1.65 7.64 -52.48 -0.40 1.25 16 49 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 400.83 15.07 6.04 6.04 Total: -1.00 -32.98 400.83 -9.70 -42.68 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -8.27 Total: -1.12 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -2.75 Total: -13.41 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.40 Total: -37.13 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: -0.10 Total: -13.50 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.98 -9.70 -42.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171507863.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.777 kcal (2) G-P(sol) polarization free energy of solvation -32.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds