Wall clock time and date at job start Tue Mar 31 2020 12:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47455 * 2 1 4 4 C 1.53002 * 109.47093 * 120.00323 * 2 1 3 5 5 C 1.53000 * 109.47541 * 65.75410 * 4 2 1 6 6 N 1.46900 * 109.47124 * 174.60040 * 5 4 2 7 7 C 1.46905 * 110.99675 * 199.77352 * 6 5 4 8 8 C 1.50692 * 109.47104 * 66.04388 * 7 6 5 9 9 H 1.07996 * 120.00576 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99821 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99966 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00081 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47214 * 89.99792 * 12 10 8 14 14 H 1.48496 * 109.47246 * 210.00262 * 12 10 8 15 15 H 1.48502 * 109.47113 * 329.99673 * 12 10 8 16 16 C 1.46894 * 111.00226 * 75.81676 * 6 5 4 17 17 C 1.50696 * 109.47233 * 199.46500 * 16 6 5 18 18 C 1.38240 * 119.97130 * 254.86637 * 17 16 6 19 19 C 1.38211 * 120.11774 * 180.02562 * 18 17 16 20 20 C 1.38238 * 120.11098 * 0.06343 * 19 18 17 21 21 C 1.38662 * 120.06742 * 0.23192 * 20 19 18 22 22 C 1.38661 * 119.96763 * 74.88953 * 17 16 6 23 23 O 1.36109 * 119.40653 * 359.62773 * 22 17 16 24 24 C 1.43433 * 116.60232 * 162.27602 * 23 22 17 25 25 C 1.53465 * 108.03051 * 46.68254 * 24 23 22 26 26 O 1.36105 * 119.40078 * 179.47389 * 21 20 19 27 27 H 1.08998 * 109.46969 * 64.68767 * 1 2 3 28 28 H 1.08996 * 109.46906 * 184.68498 * 1 2 3 29 29 H 1.09000 * 109.47144 * 304.68950 * 1 2 3 30 30 H 1.09006 * 109.47254 * 239.99932 * 2 1 3 31 31 H 1.08999 * 109.47216 * 184.95707 * 3 2 1 32 32 H 1.09000 * 109.46886 * 304.96164 * 3 2 1 33 33 H 1.09000 * 109.46860 * 64.96033 * 3 2 1 34 34 H 1.09005 * 109.47089 * 305.75538 * 4 2 1 35 35 H 1.09000 * 109.47148 * 185.75752 * 4 2 1 36 36 H 1.09000 * 109.46762 * 54.59580 * 5 4 2 37 37 H 1.09003 * 109.46936 * 294.59790 * 5 4 2 38 38 H 1.09003 * 109.46830 * 186.04831 * 7 6 5 39 39 H 1.09006 * 109.46700 * 306.04453 * 7 6 5 40 40 H 0.96999 * 119.99926 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.47306 * 79.46604 * 16 6 5 42 42 H 1.08999 * 109.47334 * 319.47079 * 16 6 5 43 43 H 1.08003 * 119.93881 * 0.03641 * 18 17 16 44 44 H 1.07997 * 119.94500 * 180.02562 * 19 18 17 45 45 H 1.07999 * 119.96835 * 179.97438 * 20 19 18 46 46 H 1.08993 * 110.07517 * 286.91381 * 24 23 22 47 47 H 1.09000 * 109.56278 * 166.15575 * 24 23 22 48 48 H 1.09008 * 109.70916 * 180.28755 * 25 24 23 49 49 H 1.09009 * 109.74750 * 59.68578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6515 -2.1995 1.1790 6 7 2.2506 -2.9176 2.3120 7 6 2.3093 -4.3616 2.0482 8 6 3.2626 -4.6262 0.9116 9 1 3.7734 -3.8040 0.4326 10 6 3.4819 -5.9181 0.4823 11 7 2.8587 -6.9192 1.0645 12 14 4.6641 -6.2462 -0.9263 13 1 6.0311 -6.4578 -0.3862 14 1 4.2301 -7.4595 -1.6643 15 1 4.6708 -5.0821 -1.8483 16 6 1.5218 -2.6389 3.5565 17 6 2.3970 -2.9733 4.7368 18 6 2.1567 -4.1189 5.4722 19 6 2.9572 -4.4282 6.5556 20 6 4.0002 -3.5923 6.9084 21 6 4.2429 -2.4384 6.1787 22 6 3.4424 -2.1312 5.0845 23 8 3.6714 -1.0105 4.3469 24 6 4.4808 0.0050 4.9559 25 6 5.7141 -0.6737 5.5671 26 8 5.2667 -1.6196 6.5445 27 1 -0.3633 0.4394 -0.9290 28 1 -0.3633 -1.0242 0.0839 29 1 -0.3633 0.5849 0.8450 30 1 1.8934 -0.5139 -0.8900 31 1 3.1264 1.4437 -0.0888 32 1 1.6060 1.9813 -0.8422 33 1 1.7511 1.9300 0.9311 34 1 1.5949 -0.2705 2.1363 35 1 3.1251 -0.6329 1.3023 36 1 2.0155 -2.6268 0.2446 37 1 0.5664 -2.2925 1.2228 38 1 2.6564 -4.8802 2.9419 39 1 1.3161 -4.7228 1.7811 40 1 3.0133 -7.8280 0.7628 41 1 0.6171 -3.2459 3.5916 42 1 1.2524 -1.5833 3.5913 43 1 1.3420 -4.7735 5.1995 44 1 2.7672 -5.3242 7.1279 45 1 4.6240 -3.8360 7.7556 46 1 3.9168 0.5144 5.7371 47 1 4.7942 0.7244 4.1995 48 1 6.3476 0.0749 6.0432 49 1 6.2758 -1.1881 4.7872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173544304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:56 Heat of formation + Delta-G solvation = -58.968154 kcal Electronic energy + Delta-G solvation = -28297.576599 eV Core-core repulsion = 24610.788350 eV Total energy + Delta-G solvation = -3686.788250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94088 -38.04743 -37.05612 -36.82929 -35.18389 -32.54586 -31.02132 -30.95863 -28.64833 -28.09459 -27.05533 -26.91367 -24.77041 -24.33449 -22.60415 -21.44662 -20.71373 -19.88738 -19.44096 -18.21687 -17.12083 -16.67732 -16.33211 -15.16930 -14.99764 -14.86341 -14.82065 -14.44504 -14.37331 -14.07729 -13.99911 -13.77458 -13.66770 -13.01883 -12.81877 -12.69731 -12.41707 -12.12588 -11.98160 -11.85312 -11.56188 -11.50741 -11.22412 -11.03615 -10.93264 -10.84603 -10.70736 -10.67255 -10.55834 -10.32207 -10.16711 -10.09640 -9.89877 -9.59631 -9.11257 -8.36975 -8.08780 -7.68857 -7.09152 -5.96534 -3.96257 1.66013 1.72682 3.28309 3.34922 3.40742 3.44158 3.50675 4.05313 4.40379 4.48147 4.88940 4.90949 4.97122 4.99019 5.18145 5.26224 5.28817 5.30909 5.38866 5.46295 5.54600 5.59708 5.65891 5.76170 5.76779 5.79445 5.90897 5.97320 6.04950 6.07036 6.12657 6.20941 6.28749 6.32797 6.39397 6.47427 6.52134 6.62050 6.65385 6.88077 6.88820 6.97799 7.00315 7.23915 7.42242 7.44056 7.75319 7.88992 8.20285 8.33977 8.65230 9.11556 9.66991 11.14436 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007787 B = 0.005800 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.089322 B = 4826.278445 C = 6893.442812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.099 4.099 3 C -0.142 4.142 4 C -0.102 4.102 5 C 0.064 3.936 6 N -0.524 5.524 7 C 0.193 3.807 8 C -0.501 4.501 9 H 0.062 0.938 10 C 0.055 3.945 11 N -0.899 5.899 12 Si 0.893 3.107 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.100 3.900 17 C -0.055 4.055 18 C -0.104 4.104 19 C -0.119 4.119 20 C -0.122 4.122 21 C 0.038 3.962 22 C 0.076 3.924 23 O -0.282 6.282 24 C 0.019 3.981 25 C 0.021 3.979 26 O -0.313 6.313 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.047 0.953 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.017 0.983 38 H 0.034 0.966 39 H -0.013 1.013 40 H 0.260 0.740 41 H 0.032 0.968 42 H 0.071 0.929 43 H 0.128 0.872 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.070 0.930 47 H 0.116 0.884 48 H 0.114 0.886 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.602 14.488 8.028 16.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.200 4.200 4 C -0.140 4.140 5 C -0.064 4.064 6 N -0.248 5.248 7 C 0.068 3.932 8 C -0.540 4.540 9 H 0.080 0.920 10 C -0.145 4.145 11 N -0.538 5.538 12 Si 0.722 3.278 13 H -0.208 1.208 14 H -0.214 1.214 15 H -0.199 1.199 16 C -0.028 4.028 17 C -0.056 4.056 18 C -0.123 4.123 19 C -0.137 4.137 20 C -0.141 4.141 21 C -0.007 4.007 22 C 0.031 3.969 23 O -0.195 6.195 24 C -0.057 4.057 25 C -0.055 4.055 26 O -0.228 6.228 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.036 0.964 38 H 0.052 0.948 39 H 0.005 0.995 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.089 0.911 43 H 0.146 0.854 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.088 0.912 47 H 0.134 0.866 48 H 0.132 0.868 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -0.114 14.511 8.043 16.591 hybrid contribution 0.084 -0.551 -0.874 1.036 sum -0.030 13.960 7.169 15.693 Atomic orbital electron populations 1.21877 0.95881 1.01936 1.00710 1.21139 0.95442 0.95742 0.99497 1.21805 1.00776 0.96424 1.00956 1.21578 1.01448 0.95228 0.95724 1.22037 0.95319 0.93034 0.96040 1.62051 1.50391 1.12558 0.99835 1.19755 0.95365 0.80946 0.97178 1.21161 1.24722 0.92241 1.15894 0.92000 1.24958 0.96305 0.96218 0.97067 1.69956 1.42887 0.99108 1.41896 0.86571 0.81303 0.77613 0.82362 1.20765 1.21381 1.19913 1.20824 0.92843 0.99927 0.89174 1.19238 0.94721 0.94339 0.97317 1.20900 1.00563 0.95720 0.95071 1.20787 0.95565 0.99330 0.98020 1.20284 1.00081 0.92241 1.01458 1.18825 0.90468 0.93508 0.97883 1.18585 0.95723 0.89545 0.93095 1.86570 1.67673 1.25040 1.40230 1.23574 0.92069 0.90517 0.99579 1.23567 0.96541 0.92384 0.92981 1.86248 1.48970 1.47567 1.40039 0.93485 0.92263 0.93242 0.91271 0.92918 0.93376 0.93123 0.93023 0.91385 0.89822 0.96442 0.94842 0.99514 0.93077 0.94959 0.91097 0.85403 0.85513 0.85558 0.91201 0.86644 0.86823 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.06 37.16 0.34 -1.51 16 2 C -0.10 -1.35 2.91 -90.62 -0.26 -1.62 16 3 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 4 C -0.10 -1.63 4.72 -26.73 -0.13 -1.76 16 5 C 0.06 1.24 4.43 -3.82 -0.02 1.22 16 6 N -0.52 -11.40 4.35 -237.52 -1.03 -12.43 16 7 C 0.19 5.05 4.55 -4.98 -0.02 5.02 16 8 C -0.50 -14.23 8.23 -34.44 -0.28 -14.51 16 9 H 0.06 1.76 7.31 -52.49 -0.38 1.37 16 10 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 11 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 12 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 C 0.10 1.90 4.52 -4.98 -0.02 1.87 16 17 C -0.05 -1.02 4.82 -104.47 -0.50 -1.52 16 18 C -0.10 -1.80 8.99 -39.59 -0.36 -2.16 16 19 C -0.12 -1.84 10.04 -39.59 -0.40 -2.23 16 20 C -0.12 -1.90 9.96 -39.42 -0.39 -2.30 16 21 C 0.04 0.63 6.49 -39.14 -0.25 0.38 16 22 C 0.08 1.37 6.47 -39.14 -0.25 1.12 16 23 O -0.28 -4.69 9.72 -32.86 -0.32 -5.01 16 24 C 0.02 0.22 7.27 37.40 0.27 0.49 16 25 C 0.02 0.25 7.25 37.40 0.27 0.52 16 26 O -0.31 -4.74 10.42 -32.85 -0.34 -5.08 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.80 6.50 -51.93 -0.34 0.47 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.05 0.80 6.90 -51.93 -0.36 0.45 16 35 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.08 1.83 6.58 -51.93 -0.34 1.48 16 37 H 0.02 0.33 6.61 -51.93 -0.34 -0.01 16 38 H 0.03 0.94 6.87 -51.93 -0.36 0.59 16 39 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.03 0.61 7.81 -51.93 -0.41 0.20 16 42 H 0.07 1.24 6.42 -51.93 -0.33 0.91 16 43 H 0.13 2.12 8.00 -52.48 -0.42 1.70 16 44 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.11 0.90 8.14 -51.92 -0.42 0.48 16 49 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -31.95 388.09 -10.23 -42.18 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -8.33 Total: 0.46 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -1.77 Total: -16.79 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.30 Total: -38.61 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.66 Total: -10.09 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.95 -10.23 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173544304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.785 kcal (2) G-P(sol) polarization free energy of solvation -31.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds