Wall clock time and date at job start Tue Mar 31 2020 12:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47455 * 2 1 4 4 C 1.53002 * 109.47093 * 120.00323 * 2 1 3 5 5 C 1.53000 * 109.47541 * 65.75410 * 4 2 1 6 6 N 1.46900 * 109.47124 * 174.60040 * 5 4 2 7 7 C 1.46905 * 110.99675 * 199.77352 * 6 5 4 8 8 C 1.50692 * 109.47104 * 66.04388 * 7 6 5 9 9 H 1.07996 * 120.00576 * 359.97438 * 8 7 6 10 10 C 1.37886 * 119.99821 * 180.02562 * 8 7 6 11 11 N 1.31513 * 119.99966 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00081 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47214 * 89.99792 * 12 10 8 14 14 H 1.48496 * 109.47246 * 210.00262 * 12 10 8 15 15 H 1.48502 * 109.47113 * 329.99673 * 12 10 8 16 16 C 1.46894 * 111.00226 * 75.81676 * 6 5 4 17 17 C 1.50696 * 109.47233 * 199.46500 * 16 6 5 18 18 C 1.38240 * 119.97130 * 254.86637 * 17 16 6 19 19 C 1.38211 * 120.11774 * 180.02562 * 18 17 16 20 20 C 1.38238 * 120.11098 * 0.06343 * 19 18 17 21 21 C 1.38662 * 120.06742 * 0.23192 * 20 19 18 22 22 C 1.38661 * 119.96763 * 74.88953 * 17 16 6 23 23 O 1.36109 * 119.40653 * 359.62773 * 22 17 16 24 24 C 1.43433 * 116.60232 * 162.27602 * 23 22 17 25 25 C 1.53465 * 108.03051 * 46.68254 * 24 23 22 26 26 O 1.36105 * 119.40078 * 179.47389 * 21 20 19 27 27 H 1.08998 * 109.46969 * 64.68767 * 1 2 3 28 28 H 1.08996 * 109.46906 * 184.68498 * 1 2 3 29 29 H 1.09000 * 109.47144 * 304.68950 * 1 2 3 30 30 H 1.09006 * 109.47254 * 239.99932 * 2 1 3 31 31 H 1.08999 * 109.47216 * 184.95707 * 3 2 1 32 32 H 1.09000 * 109.46886 * 304.96164 * 3 2 1 33 33 H 1.09000 * 109.46860 * 64.96033 * 3 2 1 34 34 H 1.09005 * 109.47089 * 305.75538 * 4 2 1 35 35 H 1.09000 * 109.47148 * 185.75752 * 4 2 1 36 36 H 1.09000 * 109.46762 * 54.59580 * 5 4 2 37 37 H 1.09003 * 109.46936 * 294.59790 * 5 4 2 38 38 H 1.09003 * 109.46830 * 186.04831 * 7 6 5 39 39 H 1.09006 * 109.46700 * 306.04453 * 7 6 5 40 40 H 0.96999 * 119.99926 * 180.02562 * 11 10 8 41 41 H 1.09003 * 109.47306 * 79.46604 * 16 6 5 42 42 H 1.08999 * 109.47334 * 319.47079 * 16 6 5 43 43 H 1.08003 * 119.93881 * 0.03641 * 18 17 16 44 44 H 1.07997 * 119.94500 * 180.02562 * 19 18 17 45 45 H 1.07999 * 119.96835 * 179.97438 * 20 19 18 46 46 H 1.08993 * 110.07517 * 286.91381 * 24 23 22 47 47 H 1.09000 * 109.56278 * 166.15575 * 24 23 22 48 48 H 1.09008 * 109.70916 * 180.28755 * 25 24 23 49 49 H 1.09009 * 109.74750 * 59.68578 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6515 -2.1995 1.1790 6 7 2.2506 -2.9176 2.3120 7 6 2.3093 -4.3616 2.0482 8 6 3.2626 -4.6262 0.9116 9 1 3.7734 -3.8040 0.4326 10 6 3.4819 -5.9181 0.4823 11 7 2.8587 -6.9192 1.0645 12 14 4.6641 -6.2462 -0.9263 13 1 6.0311 -6.4578 -0.3862 14 1 4.2301 -7.4595 -1.6643 15 1 4.6708 -5.0821 -1.8483 16 6 1.5218 -2.6389 3.5565 17 6 2.3970 -2.9733 4.7368 18 6 2.1567 -4.1189 5.4722 19 6 2.9572 -4.4282 6.5556 20 6 4.0002 -3.5923 6.9084 21 6 4.2429 -2.4384 6.1787 22 6 3.4424 -2.1312 5.0845 23 8 3.6714 -1.0105 4.3469 24 6 4.4808 0.0050 4.9559 25 6 5.7141 -0.6737 5.5671 26 8 5.2667 -1.6196 6.5445 27 1 -0.3633 0.4394 -0.9290 28 1 -0.3633 -1.0242 0.0839 29 1 -0.3633 0.5849 0.8450 30 1 1.8934 -0.5139 -0.8900 31 1 3.1264 1.4437 -0.0888 32 1 1.6060 1.9813 -0.8422 33 1 1.7511 1.9300 0.9311 34 1 1.5949 -0.2705 2.1363 35 1 3.1251 -0.6329 1.3023 36 1 2.0155 -2.6268 0.2446 37 1 0.5664 -2.2925 1.2228 38 1 2.6564 -4.8802 2.9419 39 1 1.3161 -4.7228 1.7811 40 1 3.0133 -7.8280 0.7628 41 1 0.6171 -3.2459 3.5916 42 1 1.2524 -1.5833 3.5913 43 1 1.3420 -4.7735 5.1995 44 1 2.7672 -5.3242 7.1279 45 1 4.6240 -3.8360 7.7556 46 1 3.9168 0.5144 5.7371 47 1 4.7942 0.7244 4.1995 48 1 6.3476 0.0749 6.0432 49 1 6.2758 -1.1881 4.7872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173544304.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:49:55 Heat of formation + Delta-G solvation = -77.415494 kcal Electronic energy + Delta-G solvation = -28298.376536 eV Core-core repulsion = 24610.788350 eV Total energy + Delta-G solvation = -3687.588186 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.11674 -39.47232 -38.32847 -38.02718 -36.58702 -34.66464 -32.40759 -32.03152 -30.28941 -29.25314 -28.73748 -27.94686 -26.30061 -25.56552 -24.37380 -22.84949 -21.84169 -21.47086 -20.69064 -19.40531 -18.54370 -18.20917 -17.89927 -16.72458 -16.41064 -16.25101 -16.08559 -15.89467 -15.66030 -15.50128 -15.24747 -15.03706 -14.85709 -14.44028 -14.23628 -13.95142 -13.77042 -13.59848 -13.57164 -13.18500 -13.00076 -12.75220 -12.72242 -12.59356 -12.40061 -12.33676 -12.13557 -11.97648 -11.91037 -11.80987 -11.51284 -11.38684 -11.33114 -11.16054 -11.13667 -10.58180 -9.40248 -8.94118 -8.88683 -8.18138 -6.26529 0.34888 0.45562 1.37950 1.39429 1.50177 2.18892 2.39769 2.43168 2.75199 3.14020 3.39644 3.44288 3.73810 3.99429 4.02267 4.03783 4.12135 4.18149 4.23443 4.30132 4.34534 4.39172 4.43936 4.52099 4.63404 4.65361 4.71847 4.76759 4.86230 4.86820 4.92508 5.00875 5.03545 5.06030 5.18291 5.19426 5.23244 5.32100 5.35281 5.38420 5.45640 5.59062 5.60408 5.61897 5.68617 5.77095 6.05589 6.11997 6.45276 6.55397 6.71616 6.90040 7.41910 8.92775 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007787 B = 0.005800 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3595.089322 B = 4826.278445 C = 6893.442812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.136 4.136 4 C -0.085 4.085 5 C 0.066 3.934 6 N -0.528 5.528 7 C 0.213 3.787 8 C -0.517 4.517 9 H 0.057 0.943 10 C 0.004 3.996 11 N -0.932 5.932 12 Si 0.962 3.038 13 H -0.276 1.276 14 H -0.280 1.280 15 H -0.265 1.265 16 C 0.107 3.893 17 C -0.084 4.084 18 C -0.122 4.122 19 C -0.118 4.118 20 C -0.123 4.123 21 C 0.028 3.972 22 C 0.066 3.934 23 O -0.304 6.304 24 C 0.013 3.987 25 C 0.016 3.984 26 O -0.319 6.319 27 H 0.063 0.937 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.021 0.979 38 H 0.008 0.992 39 H -0.044 1.044 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.086 0.914 43 H 0.124 0.876 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.084 0.916 47 H 0.144 0.856 48 H 0.157 0.843 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 16.521 8.203 18.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.194 4.194 4 C -0.123 4.123 5 C -0.062 4.062 6 N -0.252 5.252 7 C 0.087 3.913 8 C -0.556 4.556 9 H 0.075 0.925 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.786 3.214 13 H -0.202 1.202 14 H -0.206 1.206 15 H -0.189 1.189 16 C -0.020 4.020 17 C -0.085 4.085 18 C -0.140 4.140 19 C -0.136 4.136 20 C -0.142 4.142 21 C -0.017 4.017 22 C 0.020 3.980 23 O -0.218 6.218 24 C -0.062 4.062 25 C -0.059 4.059 26 O -0.235 6.235 27 H 0.082 0.918 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.039 0.961 38 H 0.026 0.974 39 H -0.027 1.027 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.104 0.896 43 H 0.142 0.858 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.102 0.898 47 H 0.162 0.838 48 H 0.174 0.826 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.053 16.578 8.220 18.534 hybrid contribution -0.263 -1.123 -0.875 1.447 sum 0.790 15.456 7.345 17.130 Atomic orbital electron populations 1.21846 0.94890 1.01241 1.02135 1.21126 0.96286 0.96907 0.97424 1.21745 1.00783 0.94655 1.02170 1.21418 1.00561 0.92752 0.97551 1.22046 0.95251 0.94916 0.93945 1.62012 1.51796 1.09775 1.01611 1.19334 0.93036 0.83613 0.95322 1.21424 1.25113 0.92436 1.16589 0.92488 1.25830 0.97972 0.95911 0.99696 1.70080 1.44223 0.99555 1.43391 0.85500 0.78895 0.77830 0.79128 1.20161 1.20551 1.18932 1.20790 0.92516 1.00553 0.88173 1.19327 0.95881 0.95582 0.97711 1.21047 1.01250 0.95675 0.96075 1.21102 0.94886 1.00186 0.97385 1.20663 1.00025 0.91708 1.01812 1.19041 0.90835 0.94180 0.97619 1.18669 0.95711 0.90063 0.93554 1.86506 1.68671 1.25456 1.41208 1.23945 0.91608 0.89772 1.00905 1.23881 0.96854 0.92414 0.92747 1.86237 1.48246 1.47905 1.41082 0.91808 0.93987 0.92115 0.92515 0.92965 0.91769 0.92211 0.92155 0.92784 0.92721 0.96122 0.97417 1.02663 0.92816 0.95590 0.89610 0.85840 0.82725 0.83038 0.89770 0.83811 0.82560 0.91701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.06 71.98 0.65 -2.77 16 2 C -0.10 -2.58 2.91 -10.79 -0.03 -2.61 16 3 C -0.14 -2.82 9.19 71.98 0.66 -2.16 16 4 C -0.08 -2.71 4.72 30.60 0.14 -2.56 16 5 C 0.07 2.67 4.43 86.30 0.38 3.05 16 6 N -0.53 -23.95 4.35 -905.37 -3.94 -27.89 16 7 C 0.21 11.79 4.55 85.55 0.39 12.18 16 8 C -0.52 -30.38 8.23 25.60 0.21 -30.17 16 9 H 0.06 3.33 7.31 -2.91 -0.02 3.31 16 10 C 0.00 0.22 5.46 84.66 0.46 0.69 16 11 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 12 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 15 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 16 C 0.11 4.21 4.52 85.56 0.39 4.60 16 17 C -0.08 -3.22 4.82 -19.76 -0.10 -3.31 16 18 C -0.12 -4.37 8.99 22.26 0.20 -4.17 16 19 C -0.12 -3.60 10.04 22.26 0.22 -3.37 16 20 C -0.12 -3.73 9.96 22.37 0.22 -3.50 16 21 C 0.03 0.93 6.49 22.56 0.15 1.07 16 22 C 0.07 2.38 6.47 22.56 0.15 2.53 16 23 O -0.30 -9.96 9.72 -82.58 -0.80 -10.76 16 24 C 0.01 0.27 7.27 72.14 0.52 0.79 16 25 C 0.02 0.34 7.25 72.14 0.52 0.86 16 26 O -0.32 -9.13 10.42 -82.53 -0.86 -9.99 16 27 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.13 6.50 -2.39 -0.02 1.11 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.06 1.82 6.90 -2.38 -0.02 1.80 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 2.50 6.58 -2.39 -0.02 2.49 16 37 H 0.02 0.81 6.61 -2.39 -0.02 0.79 16 38 H 0.01 0.46 6.87 -2.39 -0.02 0.45 16 39 H -0.04 -2.66 8.12 -2.38 -0.02 -2.68 16 40 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.03 1.03 7.81 -2.39 -0.02 1.01 16 42 H 0.09 3.04 6.42 -2.39 -0.02 3.03 16 43 H 0.12 4.37 8.00 -2.91 -0.02 4.35 16 44 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 45 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 46 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.16 1.91 8.14 -2.38 -0.02 1.89 16 49 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -71.34 388.09 2.78 -68.57 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.91 Total: 18.26 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 5.15 Total: -28.87 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -3.65 Total: -84.90 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -1.66 Total: -20.75 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.34 2.78 -68.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173544304.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.849 kcal (2) G-P(sol) polarization free energy of solvation -71.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds