Wall clock time and date at job start Tue Mar 31 2020 12:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 C 1.52995 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47306 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46992 * 305.00127 * 5 4 3 7 7 C 1.52996 * 109.47531 * 184.99935 * 5 4 3 8 8 C 1.52992 * 109.47506 * 174.99792 * 7 5 4 9 9 C 1.52996 * 109.47506 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47112 * 64.99763 * 5 4 3 11 11 C 1.34774 * 120.00232 * 205.00614 * 10 5 4 12 12 O 1.21600 * 119.99694 * 359.97438 * 11 10 5 13 13 C 1.47535 * 120.00228 * 180.02562 * 11 10 5 14 14 C 1.39666 * 120.19987 * 359.97438 * 13 11 10 15 15 C 1.37826 * 119.92250 * 179.97438 * 14 13 11 16 16 C 1.38571 * 120.32203 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40289 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07210 * 359.97438 * 17 16 15 19 19 O 1.35518 * 120.16250 * 179.97438 * 18 17 16 20 20 C 1.34821 * 116.99843 * 354.39102 * 19 18 17 21 21 H 1.07997 * 119.99966 * 5.05577 * 20 19 18 22 22 C 1.38696 * 119.99698 * 185.05272 * 20 19 18 23 23 N 1.31525 * 119.99767 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00423 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46928 * 90.00125 * 24 22 20 26 26 H 1.48497 * 109.47254 * 210.00048 * 24 22 20 27 27 H 1.48499 * 109.47020 * 330.00101 * 24 22 20 28 28 H 1.09005 * 109.47060 * 299.99659 * 1 2 3 29 29 H 1.09007 * 109.47197 * 59.99401 * 1 2 3 30 30 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47108 * 240.00589 * 2 1 3 32 32 H 1.08998 * 109.47335 * 120.00007 * 2 1 3 33 33 H 1.09005 * 109.46939 * 60.00267 * 3 2 1 34 34 H 1.08998 * 109.47473 * 300.00537 * 3 2 1 35 35 H 1.08991 * 109.47199 * 60.00051 * 4 3 2 36 36 H 1.09007 * 109.47019 * 299.99995 * 4 3 2 37 37 H 1.09004 * 109.47046 * 295.00326 * 7 5 4 38 38 H 1.09005 * 109.46998 * 54.99445 * 7 5 4 39 39 H 1.09004 * 109.47404 * 300.00314 * 8 7 5 40 40 H 1.09005 * 109.47276 * 59.99822 * 8 7 5 41 41 H 1.09000 * 109.47077 * 60.00384 * 9 8 7 42 42 H 1.09006 * 109.47224 * 179.97438 * 9 8 7 43 43 H 1.08996 * 109.47185 * 299.99914 * 9 8 7 44 44 H 0.97004 * 120.00303 * 25.00035 * 10 5 4 45 45 H 1.08003 * 120.03717 * 0.02562 * 14 13 11 46 46 H 1.08002 * 119.83996 * 180.02562 * 15 14 13 47 47 H 1.08003 * 119.80207 * 180.27510 * 16 15 14 48 48 H 1.08003 * 119.96573 * 179.97438 * 17 16 15 49 49 H 0.97000 * 120.00285 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4246 -0.8413 7 6 5.6048 2.8870 -0.1263 8 6 6.1044 4.3276 -0.2511 9 6 7.6292 4.3296 -0.3768 10 7 3.6930 3.5393 1.2523 11 6 3.5661 4.8802 1.3009 12 8 3.7734 5.5469 0.3054 13 6 3.1768 5.5391 2.5623 14 6 2.9383 4.7774 3.7083 15 6 2.5755 5.3989 4.8838 16 6 2.4453 6.7775 4.9349 17 6 2.6778 7.5433 3.8103 18 6 3.0451 6.9345 2.6179 19 8 3.2734 7.6846 1.5125 20 6 3.0144 9.0045 1.6043 21 1 2.7209 9.4326 2.5513 22 6 3.1252 9.8125 0.4825 23 7 2.8731 11.1003 0.5721 24 14 3.6324 9.0720 -1.1557 25 1 2.4223 8.6339 -1.8968 26 1 4.3607 10.0899 -1.9548 27 1 4.5173 7.9034 -0.9179 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8901 34 1 1.6766 1.9565 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 6.0433 2.4257 0.7586 38 1 5.8966 2.3231 -1.0124 39 1 5.6659 4.7890 -1.1361 40 1 5.8125 4.8915 0.6349 41 1 7.9214 3.7658 -1.2627 42 1 7.9851 5.3561 -0.4662 43 1 8.0673 3.8686 0.5083 44 1 3.5279 3.0074 2.0466 45 1 3.0389 3.7026 3.6737 46 1 2.3918 4.8086 5.7693 47 1 2.1649 7.2562 5.8615 48 1 2.5739 8.6173 3.8580 49 1 2.9502 11.6654 -0.2125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177650739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:17 Heat of formation + Delta-G solvation = -68.920653 kcal Electronic energy + Delta-G solvation = -27784.238021 eV Core-core repulsion = 24097.018199 eV Total energy + Delta-G solvation = -3687.219822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.96935 -38.72555 -36.72460 -36.41634 -34.87006 -33.25044 -32.43779 -31.35601 -29.95473 -29.18266 -27.92973 -25.31262 -24.55979 -23.33041 -21.72099 -21.45684 -20.76905 -20.48218 -20.04965 -17.88911 -17.72251 -16.48216 -16.17105 -15.43080 -15.15427 -14.73351 -14.38987 -14.30557 -14.07857 -14.02100 -13.72065 -13.63475 -13.47977 -13.11731 -12.95922 -12.70921 -12.49746 -12.33603 -12.15726 -11.96166 -11.66335 -11.53363 -11.41196 -11.25746 -11.24344 -11.02362 -10.91498 -10.80860 -10.71507 -10.68167 -10.31828 -10.20817 -10.02773 -9.58468 -8.97340 -8.87959 -8.58169 -8.35783 -7.46284 -6.45990 -4.11014 1.60016 2.20084 3.32328 3.38732 3.61037 3.62441 3.67194 4.36350 4.46769 4.54178 4.75213 4.78464 4.87291 5.04242 5.10229 5.14208 5.20826 5.28890 5.34573 5.39314 5.43739 5.52421 5.59655 5.62176 5.65562 5.70931 5.74385 5.80104 5.86431 5.90775 5.95802 6.00306 6.05276 6.08758 6.11360 6.21987 6.26941 6.36535 6.39261 6.55332 6.57187 6.79827 6.84832 6.93845 7.03251 7.16118 7.49271 7.69311 7.96097 8.03300 8.88895 8.95775 9.53194 10.59221 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.004550 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.641972 B = 6151.874196 C = 7119.698369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.122 4.122 4 C -0.124 4.124 5 C 0.146 3.854 6 H 0.086 0.914 7 C -0.126 4.126 8 C -0.122 4.122 9 C -0.150 4.150 10 N -0.733 5.733 11 C 0.561 3.439 12 O -0.513 6.513 13 C -0.226 4.226 14 C -0.041 4.041 15 C -0.222 4.222 16 C -0.052 4.052 17 C -0.228 4.228 18 C 0.201 3.799 19 O -0.165 6.165 20 C -0.396 4.396 21 H 0.107 0.893 22 C 0.072 3.928 23 N -0.871 5.871 24 Si 0.900 3.100 25 H -0.275 1.275 26 H -0.288 1.288 27 H -0.236 1.236 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.392 0.608 45 H 0.113 0.887 46 H 0.111 0.889 47 H 0.113 0.887 48 H 0.137 0.863 49 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.146 -20.476 1.928 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.159 4.159 4 C -0.162 4.162 5 C 0.041 3.959 6 H 0.104 0.896 7 C -0.165 4.165 8 C -0.159 4.159 9 C -0.207 4.207 10 N -0.388 5.388 11 C 0.351 3.649 12 O -0.388 6.388 13 C -0.231 4.231 14 C -0.060 4.060 15 C -0.241 4.241 16 C -0.070 4.070 17 C -0.247 4.247 18 C 0.143 3.857 19 O -0.065 6.065 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.133 4.133 23 N -0.507 5.507 24 Si 0.725 3.275 25 H -0.200 1.200 26 H -0.214 1.214 27 H -0.159 1.159 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.090 0.910 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.226 0.774 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.155 0.845 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.382 -19.780 0.800 19.845 hybrid contribution 0.006 -0.252 -0.074 0.263 sum 1.389 -20.032 0.726 20.093 Atomic orbital electron populations 1.21783 0.95993 1.01302 1.02047 1.21530 0.95843 0.97020 1.01674 1.21635 0.94985 0.96446 1.02860 1.21878 0.95963 0.95784 1.02601 1.20945 0.94227 0.92420 0.88271 0.89571 1.22030 0.95241 0.97870 1.01319 1.21603 0.94450 0.95994 1.03899 1.21788 0.96977 1.01343 1.00626 1.45942 1.73039 1.07080 1.12756 1.18113 0.76964 0.81374 0.88476 1.90861 1.48660 1.63533 1.35795 1.18915 1.18392 0.91097 0.94666 1.20759 0.95670 0.97762 0.91836 1.20531 1.11077 0.94668 0.97792 1.20955 0.95229 0.93695 0.97151 1.21288 1.09239 1.01403 0.92768 1.19026 0.90380 0.89338 0.86907 1.83781 1.70869 1.20572 1.31253 1.20918 1.47543 0.79262 0.99387 0.87534 1.24486 0.95082 0.94399 0.99381 1.69642 1.45283 1.03932 1.31803 0.86203 0.80426 0.79892 0.81023 1.20049 1.21386 1.15900 0.92643 0.92758 0.93027 0.92275 0.92210 0.91528 0.91860 0.90797 0.91642 0.92261 0.91847 0.91525 0.90992 0.93483 0.92939 0.93410 0.77388 0.86942 0.87109 0.86921 0.84505 0.90874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.12 -1.17 5.10 -26.73 -0.14 -1.30 16 4 C -0.12 -1.14 4.75 -26.73 -0.13 -1.27 16 5 C 0.15 1.84 2.26 -67.93 -0.15 1.69 16 6 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 7 C -0.13 -1.55 4.89 -26.74 -0.13 -1.68 16 8 C -0.12 -1.93 4.53 -26.74 -0.12 -2.05 16 9 C -0.15 -2.03 9.91 37.16 0.37 -1.66 16 10 N -0.73 -10.30 4.43 -54.85 -0.24 -10.54 16 11 C 0.56 10.83 6.33 -12.47 -0.08 10.75 16 12 O -0.51 -12.02 12.30 -16.58 -0.20 -12.22 16 13 C -0.23 -4.49 5.89 -104.81 -0.62 -5.11 16 14 C -0.04 -0.65 9.53 -39.20 -0.37 -1.03 16 15 C -0.22 -3.42 10.02 -39.61 -0.40 -3.82 16 16 C -0.05 -0.88 10.03 -39.54 -0.40 -1.28 16 17 C -0.23 -4.80 9.16 -39.44 -0.36 -5.16 16 18 C 0.20 4.70 6.66 -38.60 -0.26 4.45 16 19 O -0.16 -4.48 6.67 -21.07 -0.14 -4.62 16 20 C -0.40 -11.31 9.95 30.90 0.31 -11.00 16 21 H 0.11 3.04 5.44 -52.49 -0.29 2.76 16 22 C 0.07 2.07 5.49 -17.51 -0.10 1.97 16 23 N -0.87 -25.39 13.96 55.48 0.77 -24.62 16 24 Si 0.90 23.19 28.62 -169.99 -4.86 18.32 16 25 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.24 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.05 0.45 8.14 -51.92 -0.42 0.03 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.70 7.75 -51.93 -0.40 0.29 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.07 1.20 7.84 -51.93 -0.41 0.79 16 40 H 0.07 1.37 5.64 -51.93 -0.29 1.07 16 41 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.39 4.44 6.63 -40.82 -0.27 4.17 16 45 H 0.11 1.34 6.40 -52.48 -0.34 1.00 16 46 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 47 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 48 H 0.14 3.01 5.64 -52.48 -0.30 2.71 16 49 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 390.86 15.07 5.89 5.89 Total: -1.00 -31.50 390.86 -9.31 -40.81 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -8.16 Total: 5.51 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -2.36 Total: -18.53 kcal Atomic # 7 Polarization: -35.69 SS G_CDS: 0.53 Total: -35.16 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.34 Total: -16.84 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.86 Total: 18.32 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.50 -9.31 -40.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177650739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.111 kcal (2) G-P(sol) polarization free energy of solvation -31.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds