Wall clock time and date at job start Tue Mar 31 2020 12:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46994 * 2 1 4 4 C 1.52995 * 109.46962 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47306 * 180.02562 * 4 3 2 6 6 H 1.09003 * 109.46992 * 305.00127 * 5 4 3 7 7 C 1.52996 * 109.47531 * 184.99935 * 5 4 3 8 8 C 1.52992 * 109.47506 * 174.99792 * 7 5 4 9 9 C 1.52996 * 109.47506 * 179.97438 * 8 7 5 10 10 N 1.46496 * 109.47112 * 64.99763 * 5 4 3 11 11 C 1.34774 * 120.00232 * 205.00614 * 10 5 4 12 12 O 1.21600 * 119.99694 * 359.97438 * 11 10 5 13 13 C 1.47535 * 120.00228 * 180.02562 * 11 10 5 14 14 C 1.39666 * 120.19987 * 359.97438 * 13 11 10 15 15 C 1.37826 * 119.92250 * 179.97438 * 14 13 11 16 16 C 1.38571 * 120.32203 * 0.02562 * 15 14 13 17 17 C 1.38025 * 120.40289 * 359.97438 * 16 15 14 18 18 C 1.38831 * 120.07210 * 359.97438 * 17 16 15 19 19 O 1.35518 * 120.16250 * 179.97438 * 18 17 16 20 20 C 1.34821 * 116.99843 * 354.39102 * 19 18 17 21 21 H 1.07997 * 119.99966 * 5.05577 * 20 19 18 22 22 C 1.38696 * 119.99698 * 185.05272 * 20 19 18 23 23 N 1.31525 * 119.99767 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 120.00423 * 0.02562 * 22 20 19 25 25 H 1.48507 * 109.46928 * 90.00125 * 24 22 20 26 26 H 1.48497 * 109.47254 * 210.00048 * 24 22 20 27 27 H 1.48499 * 109.47020 * 330.00101 * 24 22 20 28 28 H 1.09005 * 109.47060 * 299.99659 * 1 2 3 29 29 H 1.09007 * 109.47197 * 59.99401 * 1 2 3 30 30 H 1.08997 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47108 * 240.00589 * 2 1 3 32 32 H 1.08998 * 109.47335 * 120.00007 * 2 1 3 33 33 H 1.09005 * 109.46939 * 60.00267 * 3 2 1 34 34 H 1.08998 * 109.47473 * 300.00537 * 3 2 1 35 35 H 1.08991 * 109.47199 * 60.00051 * 4 3 2 36 36 H 1.09007 * 109.47019 * 299.99995 * 4 3 2 37 37 H 1.09004 * 109.47046 * 295.00326 * 7 5 4 38 38 H 1.09005 * 109.46998 * 54.99445 * 7 5 4 39 39 H 1.09004 * 109.47404 * 300.00314 * 8 7 5 40 40 H 1.09005 * 109.47276 * 59.99822 * 8 7 5 41 41 H 1.09000 * 109.47077 * 60.00384 * 9 8 7 42 42 H 1.09006 * 109.47224 * 179.97438 * 9 8 7 43 43 H 1.08996 * 109.47185 * 299.99914 * 9 8 7 44 44 H 0.97004 * 120.00303 * 25.00035 * 10 5 4 45 45 H 1.08003 * 120.03717 * 0.02562 * 14 13 11 46 46 H 1.08002 * 119.83996 * 180.02562 * 15 14 13 47 47 H 1.08003 * 119.80207 * 180.27510 * 16 15 14 48 48 H 1.08003 * 119.96573 * 179.97438 * 17 16 15 49 49 H 0.97000 * 120.00285 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 1 3.6450 3.4246 -0.8413 7 6 5.6048 2.8870 -0.1263 8 6 6.1044 4.3276 -0.2511 9 6 7.6292 4.3296 -0.3768 10 7 3.6930 3.5393 1.2523 11 6 3.5661 4.8802 1.3009 12 8 3.7734 5.5469 0.3054 13 6 3.1768 5.5391 2.5623 14 6 2.9383 4.7774 3.7083 15 6 2.5755 5.3989 4.8838 16 6 2.4453 6.7775 4.9349 17 6 2.6778 7.5433 3.8103 18 6 3.0451 6.9345 2.6179 19 8 3.2734 7.6846 1.5125 20 6 3.0144 9.0045 1.6043 21 1 2.7209 9.4326 2.5513 22 6 3.1252 9.8125 0.4825 23 7 2.8731 11.1003 0.5721 24 14 3.6324 9.0720 -1.1557 25 1 2.4223 8.6339 -1.8968 26 1 4.3607 10.0899 -1.9548 27 1 4.5173 7.9034 -0.9179 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5140 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.6767 1.9564 0.8901 34 1 1.6766 1.9565 -0.8899 35 1 3.9329 0.9289 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 6.0433 2.4257 0.7586 38 1 5.8966 2.3231 -1.0124 39 1 5.6659 4.7890 -1.1361 40 1 5.8125 4.8915 0.6349 41 1 7.9214 3.7658 -1.2627 42 1 7.9851 5.3561 -0.4662 43 1 8.0673 3.8686 0.5083 44 1 3.5279 3.0074 2.0466 45 1 3.0389 3.7026 3.6737 46 1 2.3918 4.8086 5.7693 47 1 2.1649 7.2562 5.8615 48 1 2.5739 8.6173 3.8580 49 1 2.9502 11.6654 -0.2125 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177650739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:16 Heat of formation + Delta-G solvation = -86.671553 kcal Electronic energy + Delta-G solvation = -27785.007758 eV Core-core repulsion = 24097.018199 eV Total energy + Delta-G solvation = -3687.989559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47715 -40.24088 -38.22610 -37.72059 -35.79388 -34.56752 -34.45651 -32.58940 -31.15532 -30.77616 -28.89333 -27.28956 -25.55584 -24.68225 -23.12264 -22.50322 -21.83993 -21.56282 -21.42287 -19.80003 -19.33075 -17.96071 -17.47570 -16.66817 -16.43167 -16.13628 -15.86728 -15.74861 -15.63888 -15.46788 -15.21438 -14.75289 -14.49644 -14.39036 -14.21976 -14.09429 -14.01625 -13.77368 -13.45313 -13.12477 -12.89393 -12.83281 -12.61291 -12.59463 -12.44020 -12.32501 -12.07615 -12.00307 -11.90002 -11.82821 -11.53869 -11.46645 -11.36468 -11.20949 -10.97826 -10.55412 -9.96701 -9.75016 -9.12890 -8.58762 -6.26878 0.09445 0.66160 1.22444 1.27737 1.56760 2.12424 2.28008 2.35449 2.76547 3.04276 3.19322 3.60007 3.95539 4.03027 4.06521 4.07239 4.14771 4.22558 4.26838 4.30916 4.41995 4.49773 4.51424 4.59182 4.63944 4.69412 4.79647 4.84636 4.86013 4.92334 4.97673 5.01612 5.06820 5.11884 5.14250 5.21229 5.26864 5.29278 5.33200 5.37002 5.44594 5.48488 5.54289 5.55717 5.63321 5.70166 5.75313 5.84131 6.16903 6.75310 6.80659 7.53870 7.60408 8.51954 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009782 B = 0.004550 C = 0.003932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2861.641972 B = 6151.874196 C = 7119.698369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.118 4.118 3 C -0.122 4.122 4 C -0.111 4.111 5 C 0.143 3.857 6 H 0.051 0.949 7 C -0.117 4.117 8 C -0.122 4.122 9 C -0.145 4.145 10 N -0.708 5.708 11 C 0.555 3.445 12 O -0.562 6.562 13 C -0.232 4.232 14 C -0.031 4.031 15 C -0.190 4.190 16 C -0.045 4.045 17 C -0.253 4.253 18 C 0.161 3.839 19 O -0.208 6.208 20 C -0.401 4.401 21 H 0.090 0.910 22 C 0.027 3.973 23 N -0.913 5.913 24 Si 0.955 3.045 25 H -0.279 1.279 26 H -0.268 1.268 27 H -0.263 1.263 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.041 0.959 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.030 0.970 40 H 0.034 0.966 41 H 0.068 0.932 42 H 0.033 0.967 43 H 0.064 0.936 44 H 0.409 0.591 45 H 0.165 0.835 46 H 0.166 0.834 47 H 0.149 0.851 48 H 0.112 0.888 49 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.529 -25.969 4.327 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.155 4.155 3 C -0.160 4.160 4 C -0.149 4.149 5 C 0.039 3.961 6 H 0.069 0.931 7 C -0.155 4.155 8 C -0.160 4.160 9 C -0.202 4.202 10 N -0.363 5.363 11 C 0.344 3.656 12 O -0.441 6.441 13 C -0.237 4.237 14 C -0.050 4.050 15 C -0.208 4.208 16 C -0.063 4.063 17 C -0.272 4.272 18 C 0.107 3.893 19 O -0.112 6.112 20 C -0.477 4.477 21 H 0.108 0.892 22 C -0.173 4.173 23 N -0.553 5.553 24 Si 0.780 3.220 25 H -0.204 1.204 26 H -0.193 1.193 27 H -0.188 1.188 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.049 0.951 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.053 0.947 43 H 0.084 0.916 44 H 0.247 0.753 45 H 0.183 0.817 46 H 0.183 0.817 47 H 0.166 0.834 48 H 0.130 0.870 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.759 -25.354 3.253 25.622 hybrid contribution -0.175 1.080 -0.483 1.196 sum 1.584 -24.274 2.769 24.483 Atomic orbital electron populations 1.21809 0.96389 1.01853 1.01376 1.21491 0.95484 0.95756 1.02764 1.21623 0.95458 0.97447 1.01451 1.21820 0.95339 0.92976 1.04745 1.21092 0.94687 0.94105 0.86242 0.93062 1.21982 0.94585 0.95457 1.03488 1.21525 0.96088 0.97888 1.00459 1.21751 0.95122 1.00888 1.02482 1.45716 1.71123 1.05261 1.14172 1.18236 0.76695 0.82917 0.87718 1.90858 1.50784 1.65077 1.37396 1.19404 1.17437 0.90123 0.96698 1.21351 0.93404 1.00066 0.90153 1.21222 1.06384 0.94001 0.99188 1.21419 0.93357 0.94758 0.96811 1.21326 1.11049 1.00902 0.93927 1.19777 0.91614 0.90943 0.86920 1.83774 1.74608 1.19566 1.33231 1.20884 1.47406 0.80641 0.98805 0.89243 1.25008 0.95986 0.94824 1.01494 1.69686 1.48520 1.04554 1.32544 0.85411 0.79391 0.78445 0.78793 1.20448 1.19286 1.18780 0.93069 0.93757 0.91867 0.91540 0.90670 0.92410 0.93998 0.89057 0.88953 0.90010 0.89398 0.95113 0.94717 0.91286 0.94734 0.91648 0.75268 0.81744 0.81691 0.83364 0.86977 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 9.91 71.98 0.71 -1.47 16 2 C -0.12 -1.48 5.93 30.60 0.18 -1.30 16 3 C -0.12 -2.03 5.10 30.59 0.16 -1.87 16 4 C -0.11 -1.60 4.75 30.59 0.15 -1.46 16 5 C 0.14 3.36 2.26 44.99 0.10 3.46 16 6 H 0.05 1.60 7.58 -2.39 -0.02 1.58 16 7 C -0.12 -2.59 4.89 30.59 0.15 -2.44 16 8 C -0.12 -3.93 4.53 30.59 0.14 -3.79 16 9 C -0.15 -3.83 9.91 71.98 0.71 -3.11 16 10 N -0.71 -18.46 4.43 -445.70 -1.98 -20.43 16 11 C 0.55 21.66 6.33 86.70 0.55 22.21 16 12 O -0.56 -28.06 12.30 16.86 0.21 -27.86 16 13 C -0.23 -9.08 5.89 -19.99 -0.12 -9.20 16 14 C -0.03 -0.84 9.53 22.52 0.21 -0.63 16 15 C -0.19 -4.72 10.02 22.25 0.22 -4.50 16 16 C -0.05 -1.41 10.03 22.30 0.22 -1.19 16 17 C -0.25 -10.94 9.16 22.36 0.20 -10.73 16 18 C 0.16 7.83 6.66 22.91 0.15 7.98 16 19 O -0.21 -12.19 6.67 0.79 0.01 -12.19 16 20 C -0.40 -24.86 9.95 67.93 0.68 -24.19 16 21 H 0.09 5.62 5.44 -2.91 -0.02 5.61 16 22 C 0.03 1.66 5.49 84.85 0.47 2.13 16 23 N -0.91 -56.74 13.96 21.62 0.30 -56.43 16 24 Si 0.96 51.87 28.62 68.60 1.96 53.83 16 25 H -0.28 -14.99 7.11 99.48 0.71 -14.28 16 26 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.26 -15.31 7.11 99.48 0.71 -14.60 16 28 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.67 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 1.05 7.75 -2.38 -0.02 1.03 16 34 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 37 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 38 H 0.09 1.57 8.14 -2.38 -0.02 1.56 16 39 H 0.03 1.18 7.84 -2.38 -0.02 1.16 16 40 H 0.03 1.36 5.64 -2.38 -0.01 1.35 16 41 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.41 7.44 6.63 -92.71 -0.61 6.82 16 45 H 0.17 2.71 6.40 -2.91 -0.02 2.69 16 46 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 47 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 48 H 0.11 5.34 5.64 -2.91 -0.02 5.32 16 49 H 0.29 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -79.86 390.86 5.71 -74.15 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.32 Total: 19.04 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 4.89 Total: -30.10 kcal Atomic # 7 Polarization: -75.19 SS G_CDS: -1.67 Total: -76.87 kcal Atomic # 8 Polarization: -40.26 SS G_CDS: 0.21 Total: -40.05 kcal Atomic # 14 Polarization: 51.87 SS G_CDS: 1.96 Total: 53.83 kcal Total: -79.86 5.71 -74.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177650739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.524 kcal (2) G-P(sol) polarization free energy of solvation -79.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds