Wall clock time and date at job start Tue Mar 31 2020 12:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47072 * 2 1 4 4 C 1.53006 * 109.47119 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.47195 * 64.99635 * 4 3 2 6 6 C 1.53005 * 109.46745 * 65.05912 * 5 4 3 7 7 C 1.53010 * 109.46686 * 184.83328 * 6 5 4 8 8 C 1.50692 * 109.46867 * 184.99978 * 4 3 2 9 9 O 1.21282 * 120.00174 * 354.36885 * 8 4 3 10 10 N 1.34781 * 119.99893 * 174.37295 * 8 4 3 11 11 C 1.46502 * 120.00163 * 185.02395 * 10 8 4 12 12 C 1.50694 * 109.47256 * 179.97438 * 11 10 8 13 13 C 1.38305 * 119.93203 * 89.99829 * 12 11 10 14 14 C 1.38102 * 120.06851 * 179.97438 * 13 12 11 15 15 C 1.38870 * 119.93222 * 0.02749 * 14 13 12 16 16 O 1.35747 * 120.07000 * 180.02562 * 15 14 13 17 17 C 1.34827 * 117.00208 * 5.71057 * 16 15 14 18 18 H 1.07998 * 119.99687 * 354.93260 * 17 16 15 19 19 C 1.38655 * 120.00255 * 174.92525 * 17 16 15 20 20 N 1.31563 * 119.99783 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00152 * 0.02562 * 19 17 16 22 22 H 1.48496 * 109.46899 * 89.99663 * 21 19 17 23 23 H 1.48496 * 109.47064 * 209.99978 * 21 19 17 24 24 H 1.48501 * 109.46711 * 329.99824 * 21 19 17 25 25 C 1.38879 * 119.86285 * 0.27144 * 15 14 13 26 26 C 1.38108 * 119.92944 * 359.44816 * 25 15 14 27 27 H 1.09003 * 109.46638 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46852 * 299.99949 * 1 2 3 29 29 H 1.08998 * 109.47247 * 60.00479 * 1 2 3 30 30 H 1.08998 * 109.47173 * 239.99700 * 2 1 3 31 31 H 1.09001 * 109.47213 * 120.00058 * 2 1 3 32 32 H 1.08998 * 109.47366 * 59.99819 * 3 2 1 33 33 H 1.08998 * 109.46694 * 299.99860 * 3 2 1 34 34 H 1.08998 * 109.46940 * 305.00101 * 4 3 2 35 35 H 1.08993 * 109.47048 * 185.05753 * 5 4 3 36 36 H 1.09000 * 109.47186 * 305.06252 * 5 4 3 37 37 H 1.08996 * 109.47255 * 304.83503 * 6 5 4 38 38 H 1.08997 * 109.47248 * 64.83794 * 6 5 4 39 39 H 1.08996 * 109.47416 * 300.00076 * 7 6 5 40 40 H 1.08997 * 109.46896 * 60.00250 * 7 6 5 41 41 H 1.09000 * 109.46531 * 179.97438 * 7 6 5 42 42 H 0.96999 * 119.99826 * 5.02429 * 10 8 4 43 43 H 1.09003 * 109.47066 * 59.99548 * 11 10 8 44 44 H 1.09005 * 109.47087 * 300.00162 * 11 10 8 45 45 H 1.07996 * 119.96133 * 0.02562 * 13 12 11 46 46 H 1.07998 * 120.03177 * 180.02562 * 14 13 12 47 47 H 0.96997 * 119.99493 * 180.02562 * 20 19 17 48 48 H 1.07999 * 120.03898 * 179.72634 * 25 15 14 49 49 H 1.07995 * 119.96373 * 180.27802 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0795 0.8330 -1.3082 6 6 3.6755 1.7298 -2.4803 7 6 4.0788 1.0615 -3.7963 8 6 4.0723 2.8579 0.1232 9 8 3.2889 3.7835 0.1012 10 7 5.3922 3.0951 0.2583 11 6 5.8712 4.4603 0.4890 12 6 7.3737 4.4527 0.6040 13 6 8.1532 4.6170 -0.5265 14 6 9.5305 4.6111 -0.4243 15 6 10.1325 4.4393 0.8153 16 8 11.4860 4.4335 0.9191 17 6 12.1868 4.7171 -0.1973 18 1 11.6728 4.8548 -1.1371 19 6 13.5673 4.8322 -0.1388 20 7 14.2510 5.1095 -1.2281 21 14 14.4565 4.5935 1.4866 22 1 14.8174 3.1621 1.6477 23 1 15.6901 5.4199 1.5019 24 1 13.5685 5.0087 2.6021 25 6 9.3471 4.2683 1.9478 26 6 7.9703 4.2810 1.8398 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9563 -0.8900 34 1 3.9337 0.8530 0.8409 35 1 5.1657 0.7504 -1.2716 36 1 3.6440 -0.1573 -1.4415 37 1 2.5963 1.8822 -2.4659 38 1 4.1796 2.6921 -2.3921 39 1 5.1579 0.9090 -3.8107 40 1 3.5746 0.0991 -3.8845 41 1 3.7905 1.7001 -4.6313 42 1 6.0249 2.3620 0.2028 43 1 5.4384 4.8461 1.4120 44 1 5.5735 5.0956 -0.3452 45 1 7.6844 4.7510 -1.4902 46 1 10.1386 4.7399 -1.3074 47 1 15.2168 5.1896 -1.1872 48 1 9.8124 4.1300 2.9125 49 1 7.3590 4.1525 2.7208 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178782732.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:47 Heat of formation + Delta-G solvation = -76.583393 kcal Electronic energy + Delta-G solvation = -26265.457074 eV Core-core repulsion = 22577.904970 eV Total energy + Delta-G solvation = -3687.552104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.23452 -39.28333 -37.27749 -36.60597 -34.54007 -33.94920 -32.48869 -31.20701 -30.39774 -29.88030 -26.61280 -26.18259 -24.89797 -23.61112 -22.36867 -22.20011 -21.05254 -20.62296 -19.36454 -18.00412 -17.46178 -16.89137 -16.31461 -15.94460 -15.51447 -15.01852 -14.61408 -14.57287 -14.22338 -14.07053 -13.99947 -13.84833 -13.56606 -13.49886 -13.36085 -12.80661 -12.67462 -12.57402 -12.28860 -12.25394 -12.04559 -11.95886 -11.76499 -11.51343 -11.27495 -11.19997 -10.99269 -10.90434 -10.87651 -10.81676 -10.77734 -10.46516 -10.23333 -9.72226 -9.49862 -8.97612 -8.95825 -8.39741 -7.49245 -6.51096 -4.18186 1.94357 2.00796 2.67609 3.15881 3.19216 3.33166 3.36074 4.15445 4.35410 4.42840 4.51900 4.61623 4.72365 4.78184 4.83981 4.92332 5.00352 5.01568 5.14200 5.20186 5.31780 5.34024 5.35819 5.45051 5.49199 5.54466 5.56190 5.61942 5.70875 5.71691 5.72125 5.84600 5.87005 5.91753 6.00665 6.01474 6.06592 6.09403 6.23146 6.24878 6.43410 6.51395 6.66097 6.88515 7.10967 7.17284 7.48098 7.59107 7.69435 7.92993 8.26645 8.83361 9.43935 10.56018 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021822 B = 0.002276 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.791085 B =12297.412722 C =12801.481218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.101 4.101 4 C -0.110 4.110 5 C -0.113 4.113 6 C -0.129 4.129 7 C -0.151 4.151 8 C 0.516 3.484 9 O -0.547 6.547 10 N -0.723 5.723 11 C 0.177 3.823 12 C -0.205 4.205 13 C -0.052 4.052 14 C -0.224 4.224 15 C 0.166 3.834 16 O -0.213 6.213 17 C -0.391 4.391 18 H 0.108 0.892 19 C 0.064 3.936 20 N -0.875 5.875 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.259 1.259 25 C -0.195 4.195 26 C -0.057 4.057 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.094 0.906 35 H 0.068 0.932 36 H 0.076 0.924 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.401 0.599 43 H 0.065 0.935 44 H 0.066 0.934 45 H 0.110 0.890 46 H 0.134 0.866 47 H 0.281 0.719 48 H 0.118 0.882 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.379 -10.031 1.198 23.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C -0.139 4.139 4 C -0.131 4.131 5 C -0.150 4.150 6 C -0.167 4.167 7 C -0.209 4.209 8 C 0.303 3.697 9 O -0.425 6.425 10 N -0.375 5.375 11 C 0.055 3.945 12 C -0.206 4.206 13 C -0.071 4.071 14 C -0.243 4.243 15 C 0.113 3.887 16 O -0.117 6.117 17 C -0.467 4.467 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.512 5.512 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.207 1.207 24 H -0.183 1.183 25 C -0.214 4.214 26 C -0.076 4.076 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.235 0.765 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.128 0.872 46 H 0.152 0.848 47 H 0.091 0.909 48 H 0.136 0.864 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -21.541 -9.338 1.284 23.513 hybrid contribution 1.004 -0.344 0.420 1.142 sum -20.537 -9.682 1.704 22.769 Atomic orbital electron populations 1.21757 0.95845 1.01405 1.01936 1.21606 0.95931 0.96784 1.02049 1.21460 0.92360 0.96543 1.03542 1.21427 0.97852 0.93808 1.00060 1.21651 1.01134 0.99523 0.92712 1.21628 1.01806 0.98995 0.94244 1.21760 1.01549 1.00423 0.97129 1.20611 0.82271 0.91233 0.75615 1.90680 1.55589 1.45933 1.50253 1.46339 1.07183 1.10749 1.73203 1.19975 0.90516 0.82836 1.01180 1.19287 0.93448 1.13832 0.94061 1.20697 0.93075 0.96306 0.97036 1.21278 0.94789 1.09906 0.98309 1.19177 0.83758 0.92493 0.93252 1.83570 1.13441 1.77174 1.37542 1.20784 0.90019 1.49239 0.86633 0.87508 1.24496 0.95369 0.95426 0.98692 1.69645 1.08335 1.45551 1.27687 0.86167 0.78890 0.78715 0.83074 1.19808 1.20707 1.18318 1.20211 0.92793 1.11409 0.97000 1.20532 0.93428 0.97360 0.96250 0.92887 0.92754 0.92725 0.91692 0.92092 0.91392 0.90873 0.88769 0.91379 0.90535 0.91459 0.91922 0.92598 0.92867 0.92795 0.76463 0.91643 0.91533 0.87151 0.84807 0.90906 0.86381 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 37.16 0.37 -0.62 16 2 C -0.13 -0.86 5.70 -26.73 -0.15 -1.01 16 3 C -0.10 -0.89 3.86 -26.73 -0.10 -0.99 16 4 C -0.11 -0.97 2.50 -91.77 -0.23 -1.20 16 5 C -0.11 -0.88 4.83 -26.73 -0.13 -1.01 16 6 C -0.13 -1.17 5.37 -26.72 -0.14 -1.31 16 7 C -0.15 -1.22 9.91 37.16 0.37 -0.85 16 8 C 0.52 6.26 5.68 -10.99 -0.06 6.20 16 9 O -0.55 -8.61 15.99 5.56 0.09 -8.52 16 10 N -0.72 -8.45 5.52 -61.47 -0.34 -8.79 16 11 C 0.18 2.37 5.80 -5.20 -0.03 2.34 16 12 C -0.20 -3.10 5.25 -104.58 -0.55 -3.65 16 13 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 14 C -0.22 -4.53 9.17 -39.40 -0.36 -4.89 16 15 C 0.17 3.63 6.65 -39.11 -0.26 3.37 16 16 O -0.21 -5.40 8.59 0.07 0.00 -5.40 16 17 C -0.39 -10.66 9.95 30.89 0.31 -10.35 16 18 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 19 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 20 N -0.88 -24.62 13.96 55.48 0.77 -23.85 16 21 Si 0.91 21.05 28.62 -169.99 -4.86 16.18 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.19 -3.60 9.99 -39.39 -0.39 -3.99 16 26 C -0.06 -0.89 9.69 -39.61 -0.38 -1.27 16 27 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.41 6.46 -51.93 -0.34 0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 33 H 0.07 0.72 6.25 -51.93 -0.32 0.39 16 34 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.52 7.94 -51.93 -0.41 0.11 16 36 H 0.08 0.50 6.34 -51.93 -0.33 0.17 16 37 H 0.07 0.62 6.26 -51.93 -0.32 0.29 16 38 H 0.06 0.69 7.27 -51.93 -0.38 0.31 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.40 4.15 8.27 -40.82 -0.34 3.82 16 43 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 46 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 47 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 48 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 49 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 395.13 15.07 5.95 5.95 Total: -1.00 -29.45 395.13 -8.68 -38.13 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.07 Total: 5.14 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -2.23 Total: -18.85 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.44 Total: -32.64 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.86 Total: 16.18 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.45 -8.68 -38.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178782732.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.452 kcal (2) G-P(sol) polarization free energy of solvation -29.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds