Wall clock time and date at job start Tue Mar 31 2020 13:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47241 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47241 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.35714 * 116.99922 * 179.97438 * 6 5 4 8 8 C 1.38990 * 119.91107 * 179.97438 * 7 6 5 9 9 C 1.37710 * 120.08855 * 180.02562 * 8 7 6 10 10 C 1.39730 * 119.90660 * 359.97438 * 9 8 7 11 11 C 1.47606 * 120.08379 * 180.02562 * 10 9 8 12 12 O 1.21579 * 120.00258 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99940 * 179.72715 * 11 10 9 14 14 C 1.46496 * 119.99746 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47348 * 34.99382 * 14 13 11 16 16 C 1.50702 * 109.46759 * 155.00163 * 14 13 11 17 17 H 1.07994 * 120.00391 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99850 * 179.97438 * 16 14 13 19 19 N 1.31519 * 120.00085 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00252 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47031 * 59.99852 * 20 18 16 22 22 H 1.48496 * 109.47469 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47069 * 299.99872 * 20 18 16 24 24 C 1.53000 * 109.46763 * 274.99519 * 14 13 11 25 25 C 1.52995 * 109.47355 * 65.00648 * 24 14 13 26 26 C 1.39739 * 119.83011 * 0.27756 * 10 9 8 27 27 C 1.37705 * 119.90582 * 359.48729 * 26 10 9 28 28 H 1.08999 * 109.47336 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47375 * 59.99501 * 1 2 3 30 30 H 1.09005 * 109.47525 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46629 * 239.99988 * 2 1 3 32 32 H 1.08996 * 109.46979 * 120.00276 * 2 1 3 33 33 H 1.08999 * 109.46802 * 59.99862 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00518 * 3 2 1 35 35 H 1.09010 * 109.46878 * 60.00034 * 4 3 2 36 36 H 1.09001 * 109.47375 * 300.00499 * 4 3 2 37 37 H 1.08999 * 109.46802 * 59.99862 * 5 4 3 38 38 H 1.09001 * 109.47343 * 300.00518 * 5 4 3 39 39 H 1.07997 * 119.96141 * 0.02562 * 8 7 6 40 40 H 1.07996 * 120.04517 * 179.97438 * 9 8 7 41 41 H 0.96995 * 119.99552 * 359.97438 * 13 11 10 42 42 H 0.97001 * 120.00257 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.46984 * 185.00308 * 24 14 13 44 44 H 1.09004 * 109.47536 * 304.99992 * 24 14 13 45 45 H 1.09006 * 109.46797 * 299.99775 * 25 24 14 46 46 H 1.08999 * 109.47641 * 59.99546 * 25 24 14 47 47 H 1.08998 * 109.47483 * 180.02562 * 25 24 14 48 48 H 1.07994 * 120.04620 * 179.72076 * 26 10 9 49 49 H 1.08002 * 119.95239 * 180.22918 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 8 5.5090 2.8849 0.0000 7 6 6.1252 4.0941 -0.0011 8 6 7.5133 4.1647 -0.0006 9 6 8.1423 5.3897 -0.0012 10 6 7.3830 6.5627 -0.0028 11 6 8.0532 7.8779 -0.0039 12 8 9.2673 7.9415 -0.0031 13 7 7.3191 9.0083 -0.0110 14 6 7.9843 10.3135 -0.0128 15 1 8.9018 10.2530 -0.5980 16 6 7.0675 11.3436 -0.6207 17 1 6.0877 11.0548 -0.9712 18 6 7.4798 12.6548 -0.7296 19 7 8.6728 13.0067 -0.3024 20 14 6.3438 13.9315 -1.4838 21 1 5.0932 14.0136 -0.6872 22 1 7.0175 15.2549 -1.4844 23 1 6.0174 13.5412 -2.8788 24 6 8.3216 10.7158 1.4243 25 6 9.3489 9.7389 1.9997 26 6 5.9877 6.4875 0.0021 27 6 5.3663 5.2586 -0.0022 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9287 0.8908 37 1 3.7163 3.3993 0.8895 38 1 3.7170 3.3983 -0.8904 39 1 8.0994 3.2576 0.0002 40 1 9.2209 5.4437 -0.0004 41 1 6.3505 8.9574 -0.0157 42 1 8.9627 13.9292 -0.3786 43 1 8.7353 11.7243 1.4317 44 1 7.4162 10.6902 2.0309 45 1 8.9351 8.7305 1.9923 46 1 10.2542 9.7646 1.3932 47 1 9.5888 10.0253 3.0237 48 1 5.3974 7.3919 0.0054 49 1 4.2879 5.1997 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183830636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:16 Heat of formation + Delta-G solvation = -80.890987 kcal Electronic energy + Delta-G solvation = -25911.498191 eV Core-core repulsion = 22223.759296 eV Total energy + Delta-G solvation = -3687.738895 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.36668 -39.09520 -37.27433 -36.13302 -34.99110 -32.57292 -32.07398 -31.21682 -30.79513 -29.61647 -27.06631 -26.54266 -23.62850 -23.26579 -22.75787 -21.69615 -21.36902 -20.26302 -19.33772 -18.41276 -17.53080 -16.77591 -16.15771 -15.86549 -15.55151 -15.17398 -14.80153 -14.49040 -14.30398 -14.25831 -13.83115 -13.78336 -13.52561 -13.31050 -13.08395 -12.66228 -12.61587 -12.31400 -12.04315 -11.94774 -11.65409 -11.59996 -11.45032 -11.24976 -11.22594 -11.07029 -10.99219 -10.85673 -10.82390 -10.78153 -10.32002 -10.15370 -9.60931 -9.07461 -9.06354 -9.01561 -8.48621 -8.24377 -7.77003 -6.11269 -4.20800 1.09469 1.34993 2.90777 3.25627 3.30967 3.31480 3.32914 4.10753 4.22421 4.34506 4.39266 4.39517 4.54814 4.67914 4.68531 4.78965 4.87305 4.97132 5.07539 5.19179 5.19771 5.26228 5.29741 5.34127 5.39153 5.49061 5.50188 5.59482 5.66647 5.73870 5.81413 5.88135 5.96456 6.15839 6.29096 6.42225 6.49299 6.51951 6.67867 6.69582 7.07520 7.22655 7.25940 7.39202 7.47329 7.63397 7.75614 7.91961 8.19571 8.68447 8.78852 9.15073 9.46430 10.93952 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.002212 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.281567 B =12655.984318 C =13948.861742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.119 4.119 5 C 0.057 3.943 6 O -0.315 6.315 7 C 0.143 3.857 8 C -0.162 4.162 9 C -0.026 4.026 10 C -0.159 4.159 11 C 0.545 3.455 12 O -0.547 6.547 13 N -0.703 5.703 14 C 0.270 3.730 15 H 0.051 0.949 16 C -0.535 4.535 17 H 0.060 0.940 18 C 0.067 3.933 19 N -0.881 5.881 20 Si 0.901 3.099 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.277 1.277 24 C -0.127 4.127 25 C -0.138 4.138 26 C -0.048 4.048 27 C -0.218 4.218 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.063 0.937 39 H 0.133 0.867 40 H 0.142 0.858 41 H 0.386 0.614 42 H 0.265 0.735 43 H 0.099 0.901 44 H 0.030 0.970 45 H 0.039 0.961 46 H 0.050 0.950 47 H 0.022 0.978 48 H 0.131 0.869 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.151 -22.646 1.614 26.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.156 4.156 4 C -0.157 4.157 5 C -0.018 4.018 6 O -0.229 6.229 7 C 0.097 3.903 8 C -0.181 4.181 9 C -0.045 4.045 10 C -0.163 4.163 11 C 0.331 3.669 12 O -0.428 6.428 13 N -0.351 5.351 14 C 0.168 3.832 15 H 0.068 0.932 16 C -0.573 4.573 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.519 5.519 20 Si 0.729 3.271 21 H -0.202 1.202 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.166 4.166 25 C -0.195 4.195 26 C -0.067 4.067 27 C -0.236 4.236 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.219 0.781 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.041 0.959 48 H 0.149 0.851 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -12.079 -22.567 1.629 25.648 hybrid contribution -1.343 0.910 -0.367 1.663 sum -13.422 -21.656 1.263 25.510 Atomic orbital electron populations 1.21782 0.95697 1.01723 1.01940 1.21505 0.95976 0.96391 1.02283 1.21537 0.93894 0.97536 1.02613 1.21563 0.95513 0.94811 1.03783 1.22868 0.78482 0.98786 1.01681 1.85997 1.21306 1.27238 1.88315 1.19188 0.92311 0.83927 0.94864 1.20369 0.91121 0.98629 1.07968 1.21113 1.00804 0.89961 0.92573 1.20264 0.93553 0.94857 1.07594 1.18051 0.87269 0.83899 0.77702 1.90736 1.13441 1.87433 1.51157 1.46445 1.09521 1.07199 1.71908 1.18809 0.93957 0.76888 0.93522 0.93154 1.21183 1.01741 0.93179 1.41205 0.92199 1.24883 0.95281 0.98313 0.95184 1.69885 1.17984 1.18398 1.45600 0.86517 0.80557 0.80368 0.79698 1.20201 1.21136 1.20204 1.21934 0.96488 1.01450 0.96729 1.21844 1.00411 0.99220 0.98046 1.21186 0.93728 0.97435 0.94313 1.21129 0.99996 0.92127 1.10375 0.92668 0.92669 0.92696 0.91847 0.91849 0.91566 0.91553 0.90782 0.90781 0.91858 0.91849 0.84881 0.83993 0.78055 0.92506 0.88250 0.95073 0.94241 0.93101 0.95863 0.85124 0.85261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.61 5.93 -26.73 -0.16 -0.77 16 3 C -0.12 -0.62 5.21 -26.73 -0.14 -0.76 16 4 C -0.12 -0.76 5.58 -26.73 -0.15 -0.91 16 5 C 0.06 0.46 4.73 37.16 0.18 0.63 16 6 O -0.31 -3.53 10.12 -18.85 -0.19 -3.72 16 7 C 0.14 1.78 6.70 -39.02 -0.26 1.52 16 8 C -0.16 -2.09 9.97 -39.50 -0.39 -2.49 16 9 C -0.03 -0.38 9.58 -39.22 -0.38 -0.76 16 10 C -0.16 -2.63 5.88 -104.96 -0.62 -3.25 16 11 C 0.54 11.20 6.32 -12.43 -0.08 11.13 16 12 O -0.55 -12.99 13.49 5.30 0.07 -12.92 16 13 N -0.70 -14.82 4.97 -55.96 -0.28 -15.09 16 14 C 0.27 6.83 2.24 -69.08 -0.15 6.67 16 15 H 0.05 1.47 7.57 -51.93 -0.39 1.08 16 16 C -0.53 -14.08 8.73 -34.44 -0.30 -14.38 16 17 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 19 N -0.88 -24.64 11.29 55.43 0.63 -24.02 16 20 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 21 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 C -0.13 -3.12 5.45 -26.73 -0.15 -3.26 16 25 C -0.14 -3.13 8.52 37.16 0.32 -2.81 16 26 C -0.05 -0.66 9.53 -39.22 -0.37 -1.03 16 27 C -0.22 -2.61 9.01 -39.49 -0.36 -2.96 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.46 7.65 -51.93 -0.40 0.07 16 38 H 0.06 0.47 7.65 -51.93 -0.40 0.07 16 39 H 0.13 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.14 2.11 7.64 -52.49 -0.40 1.70 16 41 H 0.39 7.06 6.56 -40.82 -0.27 6.80 16 42 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 43 H 0.10 2.68 5.95 -51.93 -0.31 2.37 16 44 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.04 0.88 5.65 -51.93 -0.29 0.58 16 46 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.13 1.61 6.39 -52.49 -0.34 1.27 16 49 H 0.13 1.21 6.28 -52.49 -0.33 0.88 16 LS Contribution 392.20 15.07 5.91 5.91 Total: -1.00 -30.38 392.20 -9.77 -40.14 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -8.15 Total: 6.25 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -2.74 Total: -12.09 kcal Atomic # 7 Polarization: -39.46 SS G_CDS: 0.35 Total: -39.11 kcal Atomic # 8 Polarization: -16.51 SS G_CDS: -0.12 Total: -16.63 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.38 -9.77 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.749 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds