Wall clock time and date at job start Tue Mar 31 2020 13:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47241 * 2 1 4 4 C 1.52998 * 109.47241 * 179.97438 * 3 2 1 5 5 C 1.52998 * 109.47241 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47044 * 180.02562 * 5 4 3 7 7 C 1.35714 * 116.99922 * 179.97438 * 6 5 4 8 8 C 1.38990 * 119.91107 * 179.97438 * 7 6 5 9 9 C 1.37710 * 120.08855 * 180.02562 * 8 7 6 10 10 C 1.39730 * 119.90660 * 359.97438 * 9 8 7 11 11 C 1.47606 * 120.08379 * 180.02562 * 10 9 8 12 12 O 1.21579 * 120.00258 * 359.97438 * 11 10 9 13 13 N 1.34786 * 119.99940 * 179.72715 * 11 10 9 14 14 C 1.46496 * 119.99746 * 180.02562 * 13 11 10 15 15 H 1.08995 * 109.47348 * 34.99382 * 14 13 11 16 16 C 1.50702 * 109.46759 * 155.00163 * 14 13 11 17 17 H 1.07994 * 120.00391 * 359.97438 * 16 14 13 18 18 C 1.37879 * 119.99850 * 179.97438 * 16 14 13 19 19 N 1.31519 * 120.00085 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00252 * 179.97438 * 18 16 14 21 21 H 1.48508 * 109.47031 * 59.99852 * 20 18 16 22 22 H 1.48496 * 109.47469 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47069 * 299.99872 * 20 18 16 24 24 C 1.53000 * 109.46763 * 274.99519 * 14 13 11 25 25 C 1.52995 * 109.47355 * 65.00648 * 24 14 13 26 26 C 1.39739 * 119.83011 * 0.27756 * 10 9 8 27 27 C 1.37705 * 119.90582 * 359.48729 * 26 10 9 28 28 H 1.08999 * 109.47336 * 299.99811 * 1 2 3 29 29 H 1.09001 * 109.47375 * 59.99501 * 1 2 3 30 30 H 1.09005 * 109.47525 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46629 * 239.99988 * 2 1 3 32 32 H 1.08996 * 109.46979 * 120.00276 * 2 1 3 33 33 H 1.08999 * 109.46802 * 59.99862 * 3 2 1 34 34 H 1.09001 * 109.47343 * 300.00518 * 3 2 1 35 35 H 1.09010 * 109.46878 * 60.00034 * 4 3 2 36 36 H 1.09001 * 109.47375 * 300.00499 * 4 3 2 37 37 H 1.08999 * 109.46802 * 59.99862 * 5 4 3 38 38 H 1.09001 * 109.47343 * 300.00518 * 5 4 3 39 39 H 1.07997 * 119.96141 * 0.02562 * 8 7 6 40 40 H 1.07996 * 120.04517 * 179.97438 * 9 8 7 41 41 H 0.96995 * 119.99552 * 359.97438 * 13 11 10 42 42 H 0.97001 * 120.00257 * 180.02562 * 19 18 16 43 43 H 1.09006 * 109.46984 * 185.00308 * 24 14 13 44 44 H 1.09004 * 109.47536 * 304.99992 * 24 14 13 45 45 H 1.09006 * 109.46797 * 299.99775 * 25 24 14 46 46 H 1.08999 * 109.47641 * 59.99546 * 25 24 14 47 47 H 1.08998 * 109.47483 * 180.02562 * 25 24 14 48 48 H 1.07994 * 120.04620 * 179.72076 * 26 10 9 49 49 H 1.08002 * 119.95239 * 180.22918 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 8 5.5090 2.8849 0.0000 7 6 6.1252 4.0941 -0.0011 8 6 7.5133 4.1647 -0.0006 9 6 8.1423 5.3897 -0.0012 10 6 7.3830 6.5627 -0.0028 11 6 8.0532 7.8779 -0.0039 12 8 9.2673 7.9415 -0.0031 13 7 7.3191 9.0083 -0.0110 14 6 7.9843 10.3135 -0.0128 15 1 8.9018 10.2530 -0.5980 16 6 7.0675 11.3436 -0.6207 17 1 6.0877 11.0548 -0.9712 18 6 7.4798 12.6548 -0.7296 19 7 8.6728 13.0067 -0.3024 20 14 6.3438 13.9315 -1.4838 21 1 5.0932 14.0136 -0.6872 22 1 7.0175 15.2549 -1.4844 23 1 6.0174 13.5412 -2.8788 24 6 8.3216 10.7158 1.4243 25 6 9.3489 9.7389 1.9997 26 6 5.9877 6.4875 0.0021 27 6 5.3663 5.2586 -0.0022 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8899 35 1 3.9337 0.9285 -0.8892 36 1 3.9330 0.9287 0.8908 37 1 3.7163 3.3993 0.8895 38 1 3.7170 3.3983 -0.8904 39 1 8.0994 3.2576 0.0002 40 1 9.2209 5.4437 -0.0004 41 1 6.3505 8.9574 -0.0157 42 1 8.9627 13.9292 -0.3786 43 1 8.7353 11.7243 1.4317 44 1 7.4162 10.6902 2.0309 45 1 8.9351 8.7305 1.9923 46 1 10.2542 9.7646 1.3932 47 1 9.5888 10.0253 3.0237 48 1 5.3974 7.3919 0.0054 49 1 4.2879 5.1997 -0.0022 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183830636.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:15 Heat of formation + Delta-G solvation = -97.005775 kcal Electronic energy + Delta-G solvation = -25912.196981 eV Core-core repulsion = 22223.759296 eV Total energy + Delta-G solvation = -3688.437685 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.45087 -40.50104 -38.34852 -36.90336 -36.61973 -34.37494 -33.15520 -32.50930 -31.94670 -30.82138 -28.85041 -27.26229 -25.25392 -24.30210 -24.04303 -22.53236 -21.87732 -21.77418 -21.10765 -19.55609 -18.94132 -17.67926 -17.42441 -17.38233 -16.74923 -16.27305 -16.13403 -16.03836 -15.70603 -15.05520 -14.89170 -14.57611 -14.51244 -14.40949 -14.32492 -13.94601 -13.80098 -13.52619 -13.38000 -13.16366 -13.13940 -12.90100 -12.64848 -12.57724 -12.31808 -12.18100 -12.05602 -12.02484 -11.80002 -11.63771 -11.63464 -11.57028 -11.37167 -11.05703 -10.74968 -10.50929 -10.10088 -9.69308 -9.22086 -8.14776 -6.32403 -0.06356 0.31985 1.45547 1.47539 1.55239 1.99737 2.10827 2.36548 2.64958 2.90771 3.14521 3.70480 3.80455 3.93298 3.94291 3.96040 4.11305 4.21419 4.24462 4.33405 4.44744 4.46111 4.49519 4.57428 4.58730 4.65455 4.75973 4.83559 4.87255 4.95316 5.00578 5.05462 5.07179 5.12288 5.20256 5.24112 5.25077 5.31974 5.41579 5.42309 5.44937 5.50378 5.56569 5.60901 5.64842 5.80411 5.94442 6.17212 6.36378 6.74607 6.98893 7.33904 7.56779 8.90396 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016571 B = 0.002212 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.281567 B =12655.984318 C =13948.861742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.114 4.114 5 C 0.047 3.953 6 O -0.321 6.321 7 C 0.152 3.848 8 C -0.163 4.163 9 C -0.032 4.032 10 C -0.187 4.187 11 C 0.543 3.457 12 O -0.589 6.589 13 N -0.700 5.700 14 C 0.277 3.723 15 H -0.001 1.001 16 C -0.549 4.549 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.914 5.914 20 Si 0.971 3.029 21 H -0.264 1.264 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.120 4.120 25 C -0.124 4.124 26 C -0.043 4.043 27 C -0.210 4.210 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.152 0.848 40 H 0.132 0.868 41 H 0.401 0.599 42 H 0.265 0.735 43 H 0.073 0.927 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.026 0.974 47 H 0.046 0.954 48 H 0.145 0.855 49 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.261 -23.999 1.702 29.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.152 4.152 5 C -0.027 4.027 6 O -0.234 6.234 7 C 0.105 3.895 8 C -0.182 4.182 9 C -0.051 4.051 10 C -0.190 4.190 11 C 0.332 3.668 12 O -0.472 6.472 13 N -0.349 5.349 14 C 0.174 3.826 15 H 0.017 0.983 16 C -0.587 4.587 17 H 0.090 0.910 18 C -0.185 4.185 19 N -0.552 5.552 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.159 4.159 25 C -0.181 4.181 26 C -0.062 4.062 27 C -0.229 4.229 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.170 0.830 40 H 0.150 0.850 41 H 0.237 0.763 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.045 0.955 47 H 0.065 0.935 48 H 0.162 0.838 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -15.234 -23.958 1.720 28.443 hybrid contribution -0.416 1.157 -0.401 1.293 sum -15.650 -22.801 1.319 27.686 Atomic orbital electron populations 1.21787 0.95485 1.01931 1.02003 1.21511 0.96162 0.96293 1.02287 1.21510 0.92903 0.97742 1.03009 1.21544 0.96222 0.93836 1.03598 1.23183 0.76653 1.00079 1.02781 1.86014 1.23252 1.26465 1.87690 1.19310 0.92278 0.84707 0.93157 1.20504 0.91888 0.98350 1.07438 1.21083 1.00492 0.90454 0.93078 1.19954 0.94863 0.92695 1.11515 1.18670 0.86879 0.85088 0.76183 1.90706 1.15392 1.88178 1.52928 1.46182 1.10229 1.06108 1.72387 1.18411 0.92262 0.78847 0.93111 0.98331 1.21527 1.02252 0.93632 1.41274 0.91000 1.25783 0.96693 1.00491 0.95547 1.70046 1.19789 1.18744 1.46638 0.85412 0.78747 0.77327 0.78927 1.18825 1.21252 1.19712 1.21784 0.97105 1.00366 0.96666 1.21682 0.98814 0.98916 0.98730 1.21316 0.92441 0.98931 0.93487 1.21407 1.01571 0.90966 1.08910 0.92584 0.92617 0.92482 0.91893 0.91860 0.91138 0.91175 0.91034 0.90978 0.90656 0.90731 0.83028 0.84975 0.76298 0.92595 0.90816 0.94030 0.93999 0.95484 0.93503 0.83772 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 71.98 0.71 -0.44 16 2 C -0.12 -0.98 5.93 30.59 0.18 -0.80 16 3 C -0.11 -0.89 5.21 30.59 0.16 -0.73 16 4 C -0.11 -1.16 5.58 30.59 0.17 -0.99 16 5 C 0.05 0.60 4.73 71.98 0.34 0.94 16 6 O -0.32 -6.18 10.12 -90.36 -0.91 -7.10 16 7 C 0.15 3.36 6.70 22.63 0.15 3.52 16 8 C -0.16 -3.94 9.97 22.33 0.22 -3.72 16 9 C -0.03 -0.95 9.58 22.51 0.22 -0.73 16 10 C -0.19 -6.12 5.88 -20.08 -0.12 -6.24 16 11 C 0.54 22.93 6.32 86.71 0.55 23.48 16 12 O -0.59 -29.38 13.49 -3.97 -0.05 -29.43 16 13 N -0.70 -29.95 4.97 -449.20 -2.23 -32.18 16 14 C 0.28 14.48 2.24 44.25 0.10 14.58 16 15 H 0.00 -0.08 7.57 -2.39 -0.02 -0.09 16 16 C -0.55 -29.14 8.73 25.60 0.22 -28.91 16 17 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 18 C 0.02 0.81 5.29 84.65 0.45 1.26 16 19 N -0.91 -52.48 11.29 21.45 0.24 -52.24 16 20 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 21 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.29 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 24 C -0.12 -6.04 5.45 30.59 0.17 -5.87 16 25 C -0.12 -5.78 8.52 71.98 0.61 -5.16 16 26 C -0.04 -1.10 9.53 22.51 0.21 -0.88 16 27 C -0.21 -4.34 9.01 22.33 0.20 -4.14 16 28 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.80 7.65 -2.39 -0.02 0.78 16 38 H 0.07 0.81 7.65 -2.39 -0.02 0.79 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 40 H 0.13 4.09 7.64 -2.91 -0.02 4.07 16 41 H 0.40 14.44 6.56 -92.71 -0.61 13.83 16 42 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 43 H 0.07 4.11 5.95 -2.38 -0.01 4.10 16 44 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 45 H 0.04 1.90 5.65 -2.38 -0.01 1.89 16 46 H 0.03 1.34 7.85 -2.39 -0.02 1.32 16 47 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.14 3.20 6.39 -2.91 -0.02 3.18 16 49 H 0.16 2.27 6.28 -2.91 -0.02 2.25 16 Total: -1.00 -67.54 392.20 3.94 -63.60 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.32 Total: 28.20 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 4.55 Total: -14.86 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.99 Total: -84.41 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.97 Total: -36.53 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -67.54 3.94 -63.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183830636.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.410 kcal (2) G-P(sol) polarization free energy of solvation -67.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds