Wall clock time and date at job start Tue Mar 31 2020 12:51:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46843 * 2 1 4 4 C 1.35654 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38709 * 120.14934 * 359.97438 * 4 3 2 6 6 C 1.38052 * 120.08321 * 179.97438 * 5 4 3 7 7 C 1.38545 * 120.39314 * 359.97438 * 6 5 4 8 8 C 1.37780 * 120.29854 * 0.02562 * 7 6 5 9 9 C 1.39711 * 119.91114 * 359.97118 * 8 7 6 10 10 C 1.47540 * 120.19339 * 180.02562 * 9 8 7 11 11 O 1.21582 * 119.99831 * 149.64068 * 10 9 8 12 12 N 1.34773 * 119.99711 * 329.64117 * 10 9 8 13 13 C 1.46508 * 119.99607 * 217.00818 * 12 10 9 14 14 C 1.50698 * 109.47488 * 85.65708 * 13 12 10 15 15 H 1.08000 * 120.00056 * 4.76396 * 14 13 12 16 16 C 1.37872 * 120.00109 * 184.76259 * 14 13 12 17 17 N 1.31517 * 120.00119 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46839 * 60.00010 * 18 16 14 20 20 H 1.48498 * 109.47107 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47087 * 300.00175 * 18 16 14 22 22 C 1.46497 * 120.00511 * 37.00553 * 12 10 9 23 23 C 1.52998 * 109.47021 * 42.54887 * 22 12 10 24 24 C 1.53003 * 109.47245 * 162.54889 * 22 12 10 25 25 C 1.53002 * 109.47155 * 282.55151 * 22 12 10 26 26 C 1.53005 * 109.46911 * 263.48705 * 25 22 12 27 27 H 1.08994 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47408 * 299.99757 * 1 2 3 29 29 H 1.09004 * 109.46578 * 60.00142 * 1 2 3 30 30 H 1.08999 * 109.46996 * 240.00424 * 2 1 3 31 31 H 1.08992 * 109.46879 * 120.00035 * 2 1 3 32 32 H 1.07998 * 119.95952 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.80465 * 180.27562 * 6 5 4 34 34 H 1.07999 * 119.85069 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.04389 * 180.02562 * 8 7 6 36 36 H 1.09005 * 109.46964 * 205.65888 * 13 12 10 37 37 H 1.08999 * 109.46718 * 325.65390 * 13 12 10 38 38 H 0.96994 * 120.00378 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46767 * 92.26559 * 23 22 12 40 40 H 1.09000 * 109.47270 * 212.26668 * 23 22 12 41 41 H 1.09000 * 109.46960 * 332.26810 * 23 22 12 42 42 H 1.09007 * 109.46690 * 61.81472 * 24 22 12 43 43 H 1.08997 * 109.46688 * 181.81129 * 24 22 12 44 44 H 1.08992 * 109.47215 * 301.81489 * 24 22 12 45 45 H 1.09008 * 109.46991 * 23.48355 * 25 22 12 46 46 H 1.08993 * 109.47032 * 143.48730 * 25 22 12 47 47 H 1.09000 * 109.46942 * 183.39844 * 26 25 22 48 48 H 1.08992 * 109.47256 * 303.39961 * 26 25 22 49 49 H 1.08999 * 109.47138 * 63.40379 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5675 0.6098 0.0016 7 6 6.1042 1.8870 0.0000 8 6 5.2769 2.9888 -0.0010 9 6 3.8902 2.8186 -0.0011 10 6 2.9984 3.9940 -0.0028 11 8 1.9073 3.9285 -0.5352 12 7 3.3934 5.1403 0.5857 13 6 2.4218 5.9654 1.3080 14 6 2.2947 5.4676 2.7247 15 1 2.9340 4.6715 3.0768 16 6 1.3622 6.0284 3.5715 17 7 0.5834 6.9975 3.1427 18 14 1.2042 5.4108 5.3274 19 1 2.4944 5.6020 6.0373 20 1 0.1369 6.1716 6.0255 21 1 0.8552 3.9674 5.3149 22 6 4.7941 5.5613 0.5033 23 6 5.3136 5.3294 -0.9170 24 6 4.9010 7.0480 0.8491 25 6 5.6306 4.7463 1.4917 26 6 5.8071 5.5411 2.7871 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7882 -0.5715 0.0016 33 1 6.2235 -0.2482 -0.0021 34 1 7.1761 2.0197 0.0005 35 1 5.6998 3.9826 -0.0027 36 1 2.7598 7.0017 1.3160 37 1 1.4528 5.9031 0.8127 38 1 -0.0729 7.3918 3.7382 39 1 5.1734 6.2349 -1.5075 40 1 6.3741 5.0804 -0.8799 41 1 4.7633 4.5078 -1.3755 42 1 4.5611 7.2083 1.8723 43 1 5.9386 7.3687 0.7565 44 1 4.2796 7.6257 0.1650 45 1 5.1232 3.8063 1.7084 46 1 6.6082 4.5396 1.0562 47 1 6.4529 4.9870 3.4683 48 1 6.2597 6.5068 2.5622 49 1 4.8343 5.6957 3.2539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187511850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:19 Heat of formation + Delta-G solvation = 28.099019 kcal Electronic energy + Delta-G solvation = -29457.201244 eV Core-core repulsion = 25774.188511 eV Total energy + Delta-G solvation = -3683.012734 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.13374 -39.24428 -37.25098 -36.74785 -33.41382 -31.91226 -31.80290 -31.40043 -29.78306 -29.31359 -27.63453 -26.57200 -24.21023 -23.52765 -23.34457 -21.91642 -21.19257 -20.59699 -18.13823 -17.59591 -16.42343 -16.24520 -15.94230 -15.89207 -15.23127 -14.86348 -14.83194 -14.60014 -14.13278 -13.96630 -13.83384 -13.22966 -13.00616 -12.51379 -12.45432 -12.41020 -12.30666 -12.16328 -12.09738 -11.78113 -11.47199 -11.40771 -11.17389 -11.09477 -11.05360 -11.01009 -10.67197 -10.59308 -10.57245 -10.31035 -10.22499 -9.98177 -9.80220 -9.50087 -8.89679 -8.48946 -8.37015 -7.98473 -7.35498 -5.98943 -4.03831 1.25376 1.64120 3.32272 3.35072 3.37224 3.40562 3.42017 3.93367 4.16903 4.46684 4.84817 4.86200 5.01048 5.03039 5.11664 5.14576 5.20904 5.27176 5.33305 5.33773 5.40507 5.52166 5.65922 5.70791 5.73248 5.83328 5.84902 5.91865 6.00161 6.07061 6.15841 6.19407 6.21671 6.23302 6.31094 6.44771 6.47080 6.53900 6.62598 6.75043 6.77968 6.92768 6.99533 7.23980 7.56745 7.67566 7.76648 8.02482 8.32038 8.57644 8.94759 9.13714 9.60927 11.07837 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.006449 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.046590 B = 4340.452670 C = 5792.563568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 O -0.283 6.283 4 C 0.182 3.818 5 C -0.234 4.234 6 C -0.062 4.062 7 C -0.188 4.188 8 C -0.094 4.094 9 C -0.174 4.174 10 C 0.582 3.418 11 O -0.515 6.515 12 N -0.614 5.614 13 C 0.246 3.754 14 C -0.525 4.525 15 H 0.058 0.942 16 C 0.063 3.937 17 N -0.893 5.893 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.278 1.278 22 C 0.168 3.832 23 C -0.180 4.180 24 C -0.149 4.149 25 C -0.143 4.143 26 C -0.164 4.164 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.122 0.878 35 H 0.199 0.801 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.263 0.737 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.086 0.914 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.084 0.916 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.054 0.946 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.825 -10.052 -6.232 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.195 6.195 4 C 0.134 3.866 5 C -0.253 4.253 6 C -0.080 4.080 7 C -0.206 4.206 8 C -0.110 4.110 9 C -0.178 4.178 10 C 0.370 3.630 11 O -0.390 6.390 12 N -0.348 5.348 13 C 0.127 3.873 14 C -0.563 4.563 15 H 0.077 0.923 16 C -0.139 4.139 17 N -0.532 5.532 18 Si 0.718 3.282 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.204 1.204 22 C 0.082 3.918 23 C -0.237 4.237 24 C -0.206 4.206 25 C -0.181 4.181 26 C -0.221 4.221 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.140 0.860 35 H 0.214 0.786 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.102 0.898 46 H 0.080 0.920 47 H 0.059 0.941 48 H 0.073 0.927 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 10.855 -9.793 -6.459 15.982 hybrid contribution 0.003 -0.877 1.225 1.507 sum 10.858 -10.670 -5.233 16.097 Atomic orbital electron populations 1.21743 0.92698 1.02166 1.04224 1.22797 0.96301 0.82506 1.00721 1.86350 1.18196 1.28123 1.86810 1.19046 0.82837 0.92829 0.91859 1.21094 0.94399 0.97590 1.12180 1.20991 0.94099 0.97325 0.95606 1.20923 0.99689 0.92337 1.07669 1.23848 0.92133 1.03552 0.91475 1.19849 0.94242 0.92252 1.11451 1.17651 0.85479 0.82430 0.77445 1.90702 1.24018 1.84050 1.40233 1.47888 1.08385 1.23033 1.55541 1.19344 0.87487 0.90229 0.90231 1.21503 1.19025 1.19529 0.96289 0.92340 1.24909 0.95384 0.95090 0.98518 1.69925 1.21901 1.25265 1.36072 0.86680 0.77724 0.79006 0.84761 1.20189 1.21251 1.20356 1.20383 0.82850 0.95545 0.93007 1.22897 1.00816 1.03013 0.96951 1.22245 1.00748 0.93350 1.04288 1.22834 0.98358 1.00302 0.96579 1.22143 1.03550 0.99337 0.97044 0.90807 0.91193 0.91303 0.92386 0.92363 0.85583 0.86185 0.85981 0.78571 0.94171 0.94173 0.92762 0.91714 0.91135 0.91175 0.89480 0.92367 0.92351 0.89771 0.92006 0.94085 0.92677 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 37.16 0.38 -1.53 16 2 C 0.05 0.72 5.46 37.16 0.20 0.92 16 3 O -0.28 -5.52 8.64 -37.77 -0.33 -5.84 16 4 C 0.18 3.35 6.67 -38.70 -0.26 3.09 16 5 C -0.23 -3.35 9.03 -39.48 -0.36 -3.71 16 6 C -0.06 -0.77 10.03 -39.54 -0.40 -1.17 16 7 C -0.19 -2.42 10.02 -39.64 -0.40 -2.81 16 8 C -0.09 -1.44 4.45 -39.20 -0.17 -1.61 16 9 C -0.17 -3.36 4.89 -104.84 -0.51 -3.88 16 10 C 0.58 13.45 5.63 -12.47 -0.07 13.38 16 11 O -0.51 -13.81 15.74 -13.81 -0.22 -14.03 16 12 N -0.61 -13.48 2.36 -161.39 -0.38 -13.86 16 13 C 0.25 6.40 4.86 -5.19 -0.03 6.37 16 14 C -0.52 -14.47 8.32 -34.44 -0.29 -14.76 16 15 H 0.06 1.62 7.27 -52.49 -0.38 1.23 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.17 2.85 0.89 -131.82 -0.12 2.73 16 23 C -0.18 -2.53 7.62 37.16 0.28 -2.25 16 24 C -0.15 -2.39 5.60 37.16 0.21 -2.18 16 25 C -0.14 -2.21 3.93 -26.73 -0.10 -2.32 16 26 C -0.16 -2.58 8.60 37.16 0.32 -2.26 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.67 7.66 -51.93 -0.40 0.28 16 31 H 0.06 0.71 7.66 -51.93 -0.40 0.32 16 32 H 0.13 1.48 6.30 -52.49 -0.33 1.14 16 33 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.20 2.77 0.43 -109.67 -0.05 2.72 16 36 H 0.04 1.03 5.44 -51.93 -0.28 0.75 16 37 H 0.04 1.21 7.49 -51.93 -0.39 0.82 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.06 0.86 7.80 -51.93 -0.41 0.45 16 40 H 0.07 0.76 6.76 -51.93 -0.35 0.41 16 41 H 0.07 1.12 4.78 -51.93 -0.25 0.87 16 42 H 0.09 1.59 5.40 -51.92 -0.28 1.31 16 43 H 0.06 0.74 7.68 -51.93 -0.40 0.34 16 44 H 0.06 0.97 7.70 -51.93 -0.40 0.57 16 45 H 0.08 1.50 5.07 -51.92 -0.26 1.24 16 46 H 0.06 0.76 6.41 -51.93 -0.33 0.42 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.05 0.76 6.23 -51.93 -0.32 0.44 16 49 H 0.08 1.64 6.07 -51.93 -0.32 1.32 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -33.58 365.78 -8.31 -41.89 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.22 Total: 5.50 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: -1.40 Total: -10.30 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 0.36 Total: -39.46 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.54 Total: -19.88 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.58 -8.31 -41.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187511850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.991 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds