Wall clock time and date at job start Tue Mar 31 2020 12:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42899 * 109.46843 * 2 1 4 4 C 1.35654 * 116.99939 * 179.97438 * 3 2 1 5 5 C 1.38709 * 120.14934 * 359.97438 * 4 3 2 6 6 C 1.38052 * 120.08321 * 179.97438 * 5 4 3 7 7 C 1.38545 * 120.39314 * 359.97438 * 6 5 4 8 8 C 1.37780 * 120.29854 * 0.02562 * 7 6 5 9 9 C 1.39711 * 119.91114 * 359.97118 * 8 7 6 10 10 C 1.47540 * 120.19339 * 180.02562 * 9 8 7 11 11 O 1.21582 * 119.99831 * 149.64068 * 10 9 8 12 12 N 1.34773 * 119.99711 * 329.64117 * 10 9 8 13 13 C 1.46508 * 119.99607 * 217.00818 * 12 10 9 14 14 C 1.50698 * 109.47488 * 85.65708 * 13 12 10 15 15 H 1.08000 * 120.00056 * 4.76396 * 14 13 12 16 16 C 1.37872 * 120.00109 * 184.76259 * 14 13 12 17 17 N 1.31517 * 120.00119 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00122 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46839 * 60.00010 * 18 16 14 20 20 H 1.48498 * 109.47107 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47087 * 300.00175 * 18 16 14 22 22 C 1.46497 * 120.00511 * 37.00553 * 12 10 9 23 23 C 1.52998 * 109.47021 * 42.54887 * 22 12 10 24 24 C 1.53003 * 109.47245 * 162.54889 * 22 12 10 25 25 C 1.53002 * 109.47155 * 282.55151 * 22 12 10 26 26 C 1.53005 * 109.46911 * 263.48705 * 25 22 12 27 27 H 1.08994 * 109.46784 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47408 * 299.99757 * 1 2 3 29 29 H 1.09004 * 109.46578 * 60.00142 * 1 2 3 30 30 H 1.08999 * 109.46996 * 240.00424 * 2 1 3 31 31 H 1.08992 * 109.46879 * 120.00035 * 2 1 3 32 32 H 1.07998 * 119.95952 * 0.02562 * 5 4 3 33 33 H 1.08004 * 119.80465 * 180.27562 * 6 5 4 34 34 H 1.07999 * 119.85069 * 179.97438 * 7 6 5 35 35 H 1.08007 * 120.04389 * 180.02562 * 8 7 6 36 36 H 1.09005 * 109.46964 * 205.65888 * 13 12 10 37 37 H 1.08999 * 109.46718 * 325.65390 * 13 12 10 38 38 H 0.96994 * 120.00378 * 179.97438 * 17 16 14 39 39 H 1.09002 * 109.46767 * 92.26559 * 23 22 12 40 40 H 1.09000 * 109.47270 * 212.26668 * 23 22 12 41 41 H 1.09000 * 109.46960 * 332.26810 * 23 22 12 42 42 H 1.09007 * 109.46690 * 61.81472 * 24 22 12 43 43 H 1.08997 * 109.46688 * 181.81129 * 24 22 12 44 44 H 1.08992 * 109.47215 * 301.81489 * 24 22 12 45 45 H 1.09008 * 109.46991 * 23.48355 * 25 22 12 46 46 H 1.08993 * 109.47032 * 143.48730 * 25 22 12 47 47 H 1.09000 * 109.46942 * 183.39844 * 26 25 22 48 48 H 1.08992 * 109.47256 * 303.39961 * 26 25 22 49 49 H 1.08999 * 109.47138 * 63.40379 * 26 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3512 1.5251 0.0005 5 6 4.1990 0.4273 0.0016 6 6 5.5675 0.6098 0.0016 7 6 6.1042 1.8870 0.0000 8 6 5.2769 2.9888 -0.0010 9 6 3.8902 2.8186 -0.0011 10 6 2.9984 3.9940 -0.0028 11 8 1.9073 3.9285 -0.5352 12 7 3.3934 5.1403 0.5857 13 6 2.4218 5.9654 1.3080 14 6 2.2947 5.4676 2.7247 15 1 2.9340 4.6715 3.0768 16 6 1.3622 6.0284 3.5715 17 7 0.5834 6.9975 3.1427 18 14 1.2042 5.4108 5.3274 19 1 2.4944 5.6020 6.0373 20 1 0.1369 6.1716 6.0255 21 1 0.8552 3.9674 5.3149 22 6 4.7941 5.5613 0.5033 23 6 5.3136 5.3294 -0.9170 24 6 4.9010 7.0480 0.8491 25 6 5.6306 4.7463 1.4917 26 6 5.8071 5.5411 2.7871 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.7882 -0.5715 0.0016 33 1 6.2235 -0.2482 -0.0021 34 1 7.1761 2.0197 0.0005 35 1 5.6998 3.9826 -0.0027 36 1 2.7598 7.0017 1.3160 37 1 1.4528 5.9031 0.8127 38 1 -0.0729 7.3918 3.7382 39 1 5.1734 6.2349 -1.5075 40 1 6.3741 5.0804 -0.8799 41 1 4.7633 4.5078 -1.3755 42 1 4.5611 7.2083 1.8723 43 1 5.9386 7.3687 0.7565 44 1 4.2796 7.6257 0.1650 45 1 5.1232 3.8063 1.7084 46 1 6.6082 4.5396 1.0562 47 1 6.4529 4.9870 3.4683 48 1 6.2597 6.5068 2.5622 49 1 4.8343 5.6957 3.2539 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187511850.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:18 Heat of formation + Delta-G solvation = 7.686300 kcal Electronic energy + Delta-G solvation = -29458.086406 eV Core-core repulsion = 25774.188511 eV Total energy + Delta-G solvation = -3683.897896 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.49582 -40.52195 -38.83033 -38.04700 -35.40230 -33.71742 -32.95817 -32.64635 -31.08290 -30.50435 -29.19873 -28.22300 -25.60152 -24.96218 -24.62029 -23.48866 -22.37737 -22.00972 -19.48312 -18.93923 -18.55680 -17.64109 -17.39729 -17.10232 -16.63168 -16.53262 -16.11507 -15.96075 -15.76398 -15.35714 -15.11382 -14.47914 -14.36854 -14.20252 -13.88581 -13.66960 -13.58906 -13.41667 -13.33418 -13.20868 -12.96732 -12.90522 -12.70091 -12.54156 -12.39533 -12.32936 -12.22614 -12.17385 -11.95226 -11.77686 -11.67327 -11.51451 -11.45169 -10.95716 -10.65230 -10.56622 -9.68732 -9.23922 -9.05237 -8.17228 -6.31640 0.05538 0.52851 1.32804 1.36688 1.43785 1.82471 2.28532 2.32710 2.46203 2.90867 3.10244 3.63877 3.75428 3.81581 3.96988 3.97986 3.98251 4.10084 4.19142 4.28512 4.38535 4.46249 4.50826 4.57017 4.60680 4.70749 4.76220 4.79205 4.84159 4.84334 4.90809 5.02063 5.07516 5.12311 5.13640 5.19187 5.25969 5.29336 5.34518 5.42172 5.43090 5.51695 5.58209 5.66477 5.71153 5.91304 6.02507 6.17479 6.51573 6.75768 6.91319 7.28562 7.44947 8.88041 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009976 B = 0.006449 C = 0.004833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2806.046590 B = 4340.452670 C = 5792.563568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.332 6.332 4 C 0.151 3.849 5 C -0.234 4.234 6 C -0.047 4.047 7 C -0.179 4.179 8 C -0.089 4.089 9 C -0.214 4.214 10 C 0.572 3.428 11 O -0.579 6.579 12 N -0.618 5.618 13 C 0.264 3.736 14 C -0.526 4.526 15 H 0.054 0.946 16 C 0.009 3.991 17 N -0.929 5.929 18 Si 0.957 3.043 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.282 1.282 22 C 0.155 3.845 23 C -0.176 4.176 24 C -0.146 4.146 25 C -0.138 4.138 26 C -0.161 4.161 27 H 0.114 0.886 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.152 0.848 33 H 0.166 0.834 34 H 0.168 0.832 35 H 0.208 0.792 36 H 0.039 0.961 37 H -0.020 1.020 38 H 0.265 0.735 39 H 0.069 0.931 40 H 0.120 0.880 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.104 0.896 44 H 0.041 0.959 45 H 0.060 0.940 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.075 0.925 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.713 -12.502 -5.694 21.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 O -0.245 6.245 4 C 0.104 3.896 5 C -0.252 4.252 6 C -0.065 4.065 7 C -0.197 4.197 8 C -0.105 4.105 9 C -0.218 4.218 10 C 0.364 3.636 11 O -0.459 6.459 12 N -0.352 5.352 13 C 0.144 3.856 14 C -0.565 4.565 15 H 0.072 0.928 16 C -0.190 4.190 17 N -0.569 5.569 18 Si 0.781 3.219 19 H -0.181 1.181 20 H -0.205 1.205 21 H -0.208 1.208 22 C 0.071 3.929 23 C -0.233 4.233 24 C -0.203 4.203 25 C -0.175 4.175 26 C -0.218 4.218 27 H 0.132 0.868 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.169 0.831 33 H 0.184 0.816 34 H 0.186 0.814 35 H 0.224 0.776 36 H 0.056 0.944 37 H -0.002 1.002 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.138 0.862 41 H 0.068 0.932 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.060 0.940 45 H 0.079 0.921 46 H 0.131 0.869 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 15.806 -12.243 -5.918 20.851 hybrid contribution -1.479 -0.149 0.993 1.788 sum 14.327 -12.392 -4.924 19.572 Atomic orbital electron populations 1.21799 0.92582 1.04102 1.02185 1.23113 0.96537 0.80881 1.02553 1.86301 1.19624 1.31250 1.87356 1.19477 0.83012 0.93827 0.93321 1.21425 0.95081 0.97357 1.11368 1.21582 0.93612 0.98941 0.92397 1.21451 1.01524 0.91400 1.05302 1.23966 0.90398 1.05269 0.90904 1.19731 0.95514 0.90811 1.15723 1.18466 0.85431 0.83634 0.76111 1.90639 1.27013 1.84965 1.43304 1.47901 1.10083 1.22579 1.54656 1.18797 0.86184 0.90990 0.89674 1.21657 1.18865 1.19071 0.96865 0.92766 1.25782 0.94996 0.95248 1.02941 1.70062 1.22625 1.26581 1.37654 0.85632 0.78597 0.77926 0.79704 1.18141 1.20463 1.20763 1.20877 0.80194 0.96157 0.95673 1.22880 1.03212 1.02643 0.94529 1.22223 1.03160 0.92899 1.02011 1.22798 0.99939 0.98643 0.96121 1.22086 1.01445 1.00910 0.97351 0.86758 0.93676 0.92873 0.89976 0.90723 0.83078 0.81641 0.81418 0.77601 0.94356 1.00174 0.92629 0.91220 0.86183 0.93235 0.92281 0.87723 0.93976 0.92135 0.86919 0.92167 0.90636 0.94430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.96 10.28 71.98 0.74 -3.22 16 2 C 0.04 1.21 5.46 71.98 0.39 1.61 16 3 O -0.33 -13.75 8.64 -71.43 -0.62 -14.37 16 4 C 0.15 5.63 6.67 22.84 0.15 5.78 16 5 C -0.23 -6.08 9.03 22.34 0.20 -5.87 16 6 C -0.05 -0.93 10.03 22.30 0.22 -0.71 16 7 C -0.18 -3.62 10.02 22.23 0.22 -3.39 16 8 C -0.09 -2.50 4.45 22.52 0.10 -2.40 16 9 C -0.21 -8.45 4.89 -20.01 -0.10 -8.55 16 10 C 0.57 28.46 5.63 86.70 0.49 28.95 16 11 O -0.58 -34.47 15.74 14.29 0.22 -34.25 16 12 N -0.62 -28.91 2.36 -782.77 -1.85 -30.76 16 13 C 0.26 15.00 4.86 85.63 0.42 15.42 16 14 C -0.53 -30.85 8.32 25.60 0.21 -30.64 16 15 H 0.05 3.16 7.27 -2.91 -0.02 3.14 16 16 C 0.01 0.53 5.46 84.65 0.46 0.99 16 17 N -0.93 -57.86 13.29 21.45 0.28 -57.57 16 18 Si 0.96 46.07 29.54 68.60 2.03 48.09 16 19 H -0.26 -11.51 7.11 99.48 0.71 -10.81 16 20 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 22 C 0.16 5.16 0.89 3.61 0.00 5.16 16 23 C -0.18 -4.59 7.62 71.98 0.55 -4.04 16 24 C -0.15 -4.62 5.60 71.98 0.40 -4.22 16 25 C -0.14 -3.90 3.93 30.60 0.12 -3.78 16 26 C -0.16 -4.73 8.60 71.98 0.62 -4.11 16 27 H 0.11 2.00 8.14 -2.39 -0.02 1.99 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 30 H 0.08 1.83 7.66 -2.39 -0.02 1.81 16 31 H 0.07 1.77 7.66 -2.39 -0.02 1.75 16 32 H 0.15 3.02 6.30 -2.91 -0.02 3.00 16 33 H 0.17 1.82 8.06 -2.91 -0.02 1.80 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.21 5.08 0.43 -56.63 -0.02 5.06 16 36 H 0.04 2.15 5.44 -2.38 -0.01 2.13 16 37 H -0.02 -1.35 7.49 -2.39 -0.02 -1.36 16 38 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 39 H 0.07 1.74 7.80 -2.39 -0.02 1.72 16 40 H 0.12 1.93 6.76 -2.39 -0.02 1.91 16 41 H 0.05 1.55 4.78 -2.39 -0.01 1.54 16 42 H 0.06 2.21 5.40 -2.38 -0.01 2.20 16 43 H 0.10 2.30 7.68 -2.39 -0.02 2.28 16 44 H 0.04 1.44 7.70 -2.39 -0.02 1.42 16 45 H 0.06 2.07 5.07 -2.38 -0.01 2.06 16 46 H 0.11 2.06 6.41 -2.39 -0.02 2.05 16 47 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.07 1.87 6.23 -2.39 -0.01 1.85 16 49 H 0.04 1.46 6.07 -2.39 -0.01 1.44 16 Total: -1.00 -85.38 365.78 6.22 -79.16 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.94 Total: 22.72 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: 5.21 Total: -13.03 kcal Atomic # 7 Polarization: -86.77 SS G_CDS: -1.56 Total: -88.33 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.39 Total: -48.61 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -85.38 6.22 -79.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187511850.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.847 kcal (2) G-P(sol) polarization free energy of solvation -85.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds