Wall clock time and date at job start Tue Mar 31 2020 12:51:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47230 * 2 1 4 4 C 1.52997 * 109.47279 * 187.29137 * 3 2 1 5 5 C 1.52997 * 109.46831 * 67.29091 * 3 2 1 6 6 N 1.46495 * 109.47137 * 307.29384 * 3 2 1 7 7 C 1.46508 * 120.00001 * 130.89563 * 6 3 2 8 8 C 1.50702 * 109.47010 * 265.13910 * 7 6 3 9 9 H 1.07998 * 119.99805 * 4.80303 * 8 7 6 10 10 C 1.37879 * 119.99630 * 184.79942 * 8 7 6 11 11 N 1.31506 * 120.00398 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99547 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47289 * 359.97438 * 12 10 8 14 14 H 1.48500 * 109.47058 * 120.00368 * 12 10 8 15 15 H 1.48500 * 109.46913 * 239.99939 * 12 10 8 16 16 C 1.34778 * 120.00251 * 310.89363 * 6 3 2 17 17 O 1.21280 * 120.00417 * 185.03115 * 16 6 3 18 18 C 1.50700 * 119.99898 * 5.03455 * 16 6 3 19 19 C 1.50695 * 109.47083 * 193.86908 * 18 16 6 20 20 C 1.38165 * 120.02880 * 264.99816 * 19 18 16 21 21 C 1.38247 * 120.05630 * 180.02562 * 20 19 18 22 22 C 1.38286 * 120.11421 * 359.95809 * 21 20 19 23 23 C 1.38123 * 120.05225 * 0.02562 * 22 21 20 24 24 C 1.38708 * 120.02920 * 85.01957 * 19 18 16 25 25 O 1.35897 * 120.05719 * 359.95716 * 24 19 18 26 26 C 1.42902 * 117.00282 * 179.97438 * 25 24 19 27 27 H 1.08997 * 109.47045 * 185.20932 * 1 2 3 28 28 H 1.09003 * 109.46925 * 305.20066 * 1 2 3 29 29 H 1.08998 * 109.47403 * 65.20525 * 1 2 3 30 30 H 1.09011 * 109.46561 * 240.00440 * 2 1 3 31 31 H 1.08995 * 109.47875 * 120.00917 * 2 1 3 32 32 H 1.09001 * 109.47206 * 186.62220 * 4 3 2 33 33 H 1.09000 * 109.47613 * 306.63231 * 4 3 2 34 34 H 1.09004 * 109.46884 * 66.62584 * 4 3 2 35 35 H 1.08999 * 109.47684 * 303.12109 * 5 3 2 36 36 H 1.09009 * 109.46950 * 63.12393 * 5 3 2 37 37 H 1.09003 * 109.47294 * 183.11713 * 5 3 2 38 38 H 1.08993 * 109.46873 * 25.13960 * 7 6 3 39 39 H 1.09002 * 109.47069 * 145.14256 * 7 6 3 40 40 H 0.97001 * 120.00835 * 179.97438 * 11 10 8 41 41 H 1.09001 * 109.47284 * 73.86713 * 18 16 6 42 42 H 1.09000 * 109.47059 * 313.86617 * 18 16 6 43 43 H 1.08001 * 119.97183 * 0.02562 * 20 19 18 44 44 H 1.07997 * 119.94300 * 179.97438 * 21 20 19 45 45 H 1.07996 * 119.97045 * 179.74413 * 22 21 20 46 46 H 1.08000 * 120.02472 * 179.97438 * 23 22 21 47 47 H 1.09001 * 109.47033 * 299.99827 * 26 25 24 48 48 H 1.08996 * 109.47367 * 59.99799 * 26 25 24 49 49 H 1.09006 * 109.46937 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5590 1.4464 -0.1831 5 6 1.6850 2.1089 1.3307 6 7 1.4138 2.1818 -1.0988 7 6 0.8006 3.4883 -0.8468 8 6 -0.6753 3.3110 -0.5989 9 1 -1.0991 2.3189 -0.5492 10 6 -1.4844 4.4155 -0.4354 11 7 -0.9683 5.6235 -0.4963 12 14 -3.3136 4.1957 -0.1273 13 1 -3.6413 2.7475 -0.1047 14 1 -3.6725 4.8054 1.1783 15 1 -4.0814 4.8595 -1.2113 16 6 1.4019 1.6602 -2.3415 17 8 0.9658 2.3103 -3.2679 18 6 1.9303 0.2692 -2.5799 19 6 2.1236 0.0519 -4.0585 20 6 1.1305 -0.5538 -4.8040 21 6 1.3075 -0.7539 -6.1605 22 6 2.4780 -0.3479 -6.7748 23 6 3.4737 0.2584 -6.0339 24 6 3.2990 0.4594 -4.6721 25 8 4.2771 1.0558 -3.9412 26 6 5.4605 1.4488 -4.6392 27 1 -0.3633 -1.0234 0.0933 28 1 -0.3633 0.5924 0.8398 29 1 -0.3634 0.4310 -0.9329 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5139 0.8898 32 1 3.9365 2.4622 -0.0658 33 1 4.0169 0.7998 0.5655 34 1 3.8058 1.0799 -1.1795 35 1 0.6075 2.0568 1.4871 36 1 2.1956 1.5922 2.1434 37 1 1.9990 3.1525 1.3096 38 1 1.2638 3.9444 0.0280 39 1 0.9485 4.1324 -1.7137 40 1 -1.5375 6.4005 -0.3817 41 1 1.2181 -0.4609 -2.1954 42 1 2.8849 0.1504 -2.0673 43 1 0.2152 -0.8712 -4.3268 44 1 0.5302 -1.2279 -6.7414 45 1 2.6156 -0.5091 -7.8337 46 1 4.3879 0.5750 -6.5141 47 1 5.9250 0.5715 -5.0894 48 1 5.2013 2.1637 -5.4200 49 1 6.1578 1.9113 -3.9405 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187516117.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:41 Heat of formation + Delta-G solvation = -48.326515 kcal Electronic energy + Delta-G solvation = -29081.641693 eV Core-core repulsion = 25395.314899 eV Total energy + Delta-G solvation = -3686.326794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.77446 -40.71802 -38.39733 -38.02756 -35.39541 -33.99159 -33.12354 -31.42563 -31.04231 -30.34913 -28.39700 -27.92909 -27.42665 -24.81508 -24.21178 -23.05655 -22.88381 -21.62125 -19.44480 -18.93369 -18.59871 -17.46736 -17.17347 -17.10405 -16.59764 -16.46373 -16.17293 -15.86198 -15.65985 -15.28072 -15.17011 -14.61020 -14.44310 -14.26750 -13.98440 -13.83512 -13.58156 -13.40738 -13.23191 -13.10094 -12.90829 -12.89164 -12.81674 -12.55064 -12.43292 -12.26150 -12.07161 -12.02819 -11.96926 -11.89944 -11.73031 -11.69267 -11.34104 -10.91780 -10.58848 -10.55220 -9.73593 -9.25484 -9.03749 -8.14705 -6.26038 0.39940 0.54839 1.34569 1.37387 1.48284 1.97643 2.34755 2.42523 2.49694 2.91145 3.14862 3.74203 3.81101 3.89712 3.95136 4.08635 4.15003 4.23236 4.25571 4.33928 4.39208 4.46096 4.50614 4.53414 4.65214 4.71189 4.72050 4.81095 4.83722 4.85141 4.92026 4.96988 5.09476 5.13512 5.19850 5.21431 5.24685 5.33054 5.41661 5.45951 5.50229 5.52800 5.63400 5.68916 5.74527 5.92132 6.01579 6.19108 6.50057 6.81335 6.97698 7.38368 7.65005 8.92601 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013455 B = 0.004676 C = 0.004230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.528927 B = 5986.953463 C = 6617.772716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.153 4.153 3 C 0.155 3.845 4 C -0.159 4.159 5 C -0.143 4.143 6 N -0.589 5.589 7 C 0.261 3.739 8 C -0.518 4.518 9 H 0.064 0.936 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.957 3.043 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.288 1.288 16 C 0.513 3.487 17 O -0.598 6.598 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.085 4.085 21 C -0.163 4.163 22 C -0.087 4.087 23 C -0.216 4.216 24 C 0.118 3.882 25 O -0.335 6.335 26 C 0.020 3.980 27 H 0.072 0.928 28 H 0.047 0.953 29 H 0.025 0.975 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.043 0.957 33 H 0.099 0.901 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.040 0.960 38 H 0.030 0.970 39 H -0.018 1.018 40 H 0.262 0.738 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.153 0.847 46 H 0.148 0.852 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.836 -17.312 -4.174 21.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.190 4.190 3 C 0.071 3.929 4 C -0.217 4.217 5 C -0.200 4.200 6 N -0.320 5.320 7 C 0.140 3.860 8 C -0.557 4.557 9 H 0.082 0.918 10 C -0.194 4.194 11 N -0.575 5.575 12 Si 0.783 3.217 13 H -0.188 1.188 14 H -0.197 1.197 15 H -0.214 1.214 16 C 0.302 3.698 17 O -0.480 6.480 18 C -0.133 4.133 19 C -0.123 4.123 20 C -0.103 4.103 21 C -0.181 4.181 22 C -0.104 4.104 23 C -0.234 4.234 24 C 0.072 3.928 25 O -0.249 6.249 26 C -0.074 4.074 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.045 0.955 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.063 0.937 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.111 0.889 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.000 1.000 40 H 0.071 0.929 41 H 0.141 0.859 42 H 0.141 0.859 43 H 0.148 0.852 44 H 0.163 0.837 45 H 0.171 0.829 46 H 0.166 0.834 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.593 -16.731 -4.385 21.394 hybrid contribution -1.138 1.100 -0.155 1.590 sum 11.455 -15.630 -4.540 19.903 Atomic orbital electron populations 1.21812 0.96455 1.01289 1.01088 1.22634 0.96053 0.94700 1.05647 1.20752 0.92850 0.92528 0.86800 1.22363 0.93714 1.02401 1.03192 1.22053 1.02403 0.99907 0.95684 1.48298 1.55554 1.20305 1.07820 1.18742 0.92388 0.80455 0.94402 1.21811 0.93805 0.92954 1.47105 0.91794 1.25799 1.03148 0.94883 0.95574 1.70077 1.37188 0.98414 1.51789 0.85513 0.80018 0.78487 0.77709 1.18831 1.19731 1.21404 1.20843 0.77974 0.88894 0.82089 1.90619 1.49710 1.63684 1.43942 1.21318 1.04376 0.93826 0.93732 1.19086 0.93613 1.03740 0.95864 1.21099 0.97145 0.97119 0.94947 1.21324 0.99137 1.03343 0.94261 1.21291 0.92580 0.95768 1.00800 1.21482 1.02867 1.06682 0.92397 1.19053 0.88965 0.93675 0.91085 1.86031 1.26934 1.73723 1.38234 1.23294 0.84551 1.00595 0.98947 0.90953 0.93358 0.95542 0.88320 0.87851 0.93733 0.88203 0.91910 0.92721 0.88930 0.94079 0.95224 1.00034 0.92909 0.85862 0.85937 0.85197 0.83653 0.82891 0.83396 0.90552 0.92969 0.86813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.60 8.16 71.98 0.59 -4.02 16 2 C -0.15 -3.94 4.29 30.59 0.13 -3.81 16 3 C 0.15 5.01 0.70 3.60 0.00 5.01 16 4 C -0.16 -4.24 8.44 71.98 0.61 -3.63 16 5 C -0.14 -4.74 7.34 71.98 0.53 -4.22 16 6 N -0.59 -25.96 1.75 -779.08 -1.36 -27.32 16 7 C 0.26 14.50 4.52 85.63 0.39 14.89 16 8 C -0.52 -29.96 8.76 25.60 0.22 -29.74 16 9 H 0.06 3.61 5.91 -2.91 -0.02 3.60 16 10 C 0.00 0.22 5.46 84.66 0.46 0.68 16 11 N -0.93 -58.35 13.28 21.45 0.28 -58.06 16 12 Si 0.96 46.27 29.54 68.60 2.03 48.29 16 13 H -0.26 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 15 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 16 C 0.51 23.09 6.08 87.66 0.53 23.62 16 17 O -0.60 -33.74 15.74 -3.03 -0.05 -33.79 16 18 C -0.09 -3.09 3.11 29.10 0.09 -3.00 16 19 C -0.12 -4.02 4.43 -19.77 -0.09 -4.11 16 20 C -0.09 -2.54 9.68 22.25 0.22 -2.32 16 21 C -0.16 -4.04 10.04 22.28 0.22 -3.82 16 22 C -0.09 -1.98 10.04 22.25 0.22 -1.75 16 23 C -0.22 -5.44 9.04 22.37 0.20 -5.24 16 24 C 0.12 3.64 6.66 22.51 0.15 3.79 16 25 O -0.34 -9.90 9.63 -92.39 -0.89 -10.79 16 26 C 0.02 0.40 9.81 113.37 1.11 1.51 16 27 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 28 H 0.05 1.64 6.29 -2.39 -0.01 1.63 16 29 H 0.03 1.00 5.46 -2.39 -0.01 0.98 16 30 H 0.10 2.30 3.50 -2.38 -0.01 2.30 16 31 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.06 1.72 5.38 -2.39 -0.01 1.70 16 35 H 0.05 2.07 5.84 -2.39 -0.01 2.06 16 36 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.04 1.54 6.30 -2.39 -0.02 1.53 16 38 H 0.03 1.67 5.64 -2.39 -0.01 1.65 16 39 H -0.02 -1.22 7.51 -2.39 -0.02 -1.24 16 40 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 41 H 0.12 3.54 5.37 -2.39 -0.01 3.53 16 42 H 0.12 3.51 3.76 -2.39 -0.01 3.50 16 43 H 0.13 3.58 8.06 -2.91 -0.02 3.55 16 44 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 45 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 46 H 0.15 2.84 6.30 -2.91 -0.02 2.82 16 47 H 0.08 1.09 7.67 -2.39 -0.02 1.07 16 48 H 0.05 1.02 7.66 -2.39 -0.02 1.00 16 49 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -80.74 371.72 6.57 -74.18 By element: Atomic # 1 Polarization: 22.69 SS G_CDS: 0.96 Total: 23.65 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 5.59 Total: -16.16 kcal Atomic # 7 Polarization: -84.31 SS G_CDS: -1.08 Total: -85.38 kcal Atomic # 8 Polarization: -43.65 SS G_CDS: -0.94 Total: -44.58 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -80.74 6.57 -74.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187516117.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.849 kcal (2) G-P(sol) polarization free energy of solvation -80.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds