Wall clock time and date at job start Tue Mar 31 2020 12:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47037 * 2 1 4 4 C 1.53000 * 109.47352 * 294.78977 * 3 2 1 5 5 C 1.53005 * 109.47198 * 174.79022 * 3 2 1 6 6 N 1.46495 * 109.47268 * 54.79534 * 3 2 1 7 7 C 1.46507 * 119.99612 * 237.38936 * 6 3 2 8 8 C 1.50699 * 109.47012 * 271.83063 * 7 6 3 9 9 H 1.08002 * 119.99835 * 0.02562 * 8 7 6 10 10 C 1.37869 * 120.00316 * 180.02562 * 8 7 6 11 11 N 1.31512 * 120.00376 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99714 * 359.97438 * 10 8 7 13 13 H 1.48507 * 109.47066 * 90.00562 * 12 10 8 14 14 H 1.48507 * 109.47334 * 210.00147 * 12 10 8 15 15 H 1.48496 * 109.47246 * 330.00227 * 12 10 8 16 16 C 1.34772 * 120.00352 * 57.38397 * 6 3 2 17 17 O 1.21280 * 119.99955 * 4.60749 * 16 6 3 18 18 C 1.50700 * 120.00358 * 184.60837 * 16 6 3 19 19 H 1.09004 * 109.46865 * 313.40467 * 18 16 6 20 20 C 1.53004 * 109.46889 * 73.40432 * 18 16 6 21 21 O 1.42901 * 109.47340 * 193.40436 * 18 16 6 22 22 C 1.35899 * 116.99806 * 156.40567 * 21 18 16 23 23 C 1.38733 * 120.05770 * 1.55124 * 22 21 18 24 24 C 1.38142 * 119.94010 * 179.74643 * 23 22 21 25 25 C 1.38269 * 120.05844 * 0.51710 * 24 23 22 26 26 C 1.38266 * 120.10893 * 359.76143 * 25 24 23 27 27 C 1.38138 * 120.05713 * 359.97438 * 26 25 24 28 28 H 1.08999 * 109.46864 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46881 * 299.99734 * 1 2 3 30 30 H 1.09001 * 109.47243 * 60.00078 * 1 2 3 31 31 H 1.08999 * 109.47143 * 239.99956 * 2 1 3 32 32 H 1.09006 * 109.47542 * 120.00300 * 2 1 3 33 33 H 1.08995 * 109.47252 * 180.02562 * 4 3 2 34 34 H 1.08997 * 109.46937 * 300.00459 * 4 3 2 35 35 H 1.08997 * 109.46905 * 59.99813 * 4 3 2 36 36 H 1.08998 * 109.47305 * 305.26178 * 5 3 2 37 37 H 1.09007 * 109.46687 * 65.25714 * 5 3 2 38 38 H 1.08995 * 109.47482 * 185.25273 * 5 3 2 39 39 H 1.08992 * 109.47227 * 31.83362 * 7 6 3 40 40 H 1.09005 * 109.46896 * 151.83738 * 7 6 3 41 41 H 0.97002 * 120.00278 * 179.97438 * 11 10 8 42 42 H 1.09003 * 109.46759 * 176.35994 * 20 18 16 43 43 H 1.09001 * 109.47383 * 56.35385 * 20 18 16 44 44 H 1.09003 * 109.46834 * 296.35256 * 20 18 16 45 45 H 1.07999 * 120.02306 * 0.02562 * 23 22 21 46 46 H 1.08002 * 119.97137 * 180.23325 * 24 23 22 47 47 H 1.08000 * 119.94253 * 179.74267 * 25 24 23 48 48 H 1.08004 * 119.96962 * 179.97438 * 26 25 24 49 49 H 1.08002 * 120.02819 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6397 2.1250 -1.3096 5 6 3.5644 1.4445 0.1310 6 7 1.4520 2.1683 1.1285 7 6 0.6735 3.3863 0.8904 8 6 1.5959 4.5780 0.8794 9 1 2.6561 4.4416 1.0340 10 6 1.0865 5.8422 0.6722 11 7 1.8916 6.8821 0.6621 12 14 -0.7471 6.0780 0.4041 13 1 -1.4150 6.2935 1.7129 14 1 -0.9722 7.2595 -0.4669 15 1 -1.3117 4.8685 -0.2467 16 6 1.6272 1.7156 2.3858 17 8 2.3400 0.7561 2.5910 18 6 0.9374 2.4016 3.5367 19 1 1.0657 3.4803 3.4465 20 6 -0.5542 2.0616 3.5130 21 8 1.5081 1.9554 4.7685 22 6 1.3833 2.7807 5.8410 23 6 0.6973 3.9803 5.7186 24 6 0.5674 4.8149 6.8117 25 6 1.1296 4.4606 8.0242 26 6 1.8188 3.2683 8.1472 27 6 1.9468 2.4277 7.0586 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.0034 3.1525 -1.3097 34 1 2.0772 1.5849 -2.1492 35 1 0.5538 2.1235 -1.4029 36 1 3.8538 0.8774 1.0157 37 1 4.0057 0.9868 -0.7544 38 1 3.9197 2.4707 0.2248 39 1 0.1659 3.3109 -0.0712 40 1 -0.0653 3.5061 1.6829 41 1 1.5332 7.7716 0.5159 42 1 -1.0416 2.5046 4.3816 43 1 -0.6807 0.9793 3.5380 44 1 -1.0030 2.4590 2.6026 45 1 0.2613 4.2591 4.7707 46 1 0.0301 5.7471 6.7179 47 1 1.0304 5.1165 8.8765 48 1 2.2574 2.9940 9.0953 49 1 2.4856 1.4966 7.1551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187526220.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:06 Heat of formation + Delta-G solvation = -43.652796 kcal Electronic energy + Delta-G solvation = -28982.121335 eV Core-core repulsion = 25295.997209 eV Total energy + Delta-G solvation = -3686.124126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.48885 -39.47821 -37.36823 -36.11620 -34.03120 -32.41421 -31.44421 -30.61130 -29.89252 -29.33523 -28.27438 -26.50783 -24.56015 -23.20347 -22.72031 -22.23147 -21.89454 -20.16141 -18.14500 -17.76405 -17.11435 -16.34837 -15.95238 -15.50615 -15.30078 -15.17045 -14.75312 -14.35409 -14.17510 -14.03393 -13.48021 -13.30535 -13.21230 -13.01196 -12.76277 -12.52748 -12.37930 -12.31403 -11.90752 -11.85077 -11.65359 -11.59638 -11.42277 -11.30342 -11.26603 -11.09850 -10.85872 -10.67188 -10.58553 -10.50364 -10.41241 -10.22700 -10.14781 -9.60126 -8.88646 -8.83333 -8.75395 -7.98563 -7.75981 -6.27863 -4.29643 1.49025 1.61257 2.98877 3.08784 3.16919 3.19841 3.26424 3.95338 4.00879 4.18639 4.85501 5.00466 5.01934 5.06926 5.15728 5.24652 5.25735 5.33991 5.41291 5.49977 5.50911 5.57010 5.66839 5.75470 5.85100 5.85883 5.90204 5.96642 6.08266 6.12729 6.15486 6.17735 6.20077 6.35829 6.41879 6.49425 6.49737 6.52158 6.57231 6.59312 6.65959 6.66836 6.88333 6.91875 6.93860 7.33977 7.38801 7.65644 8.05999 8.35555 8.77564 8.86424 9.30826 10.84467 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010452 B = 0.005734 C = 0.004278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2678.237860 B = 4882.002215 C = 6543.185988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.135 4.135 3 C 0.184 3.816 4 C -0.154 4.154 5 C -0.159 4.159 6 N -0.574 5.574 7 C 0.194 3.806 8 C -0.540 4.540 9 H 0.080 0.920 10 C 0.079 3.921 11 N -0.887 5.887 12 Si 0.863 3.137 13 H -0.272 1.272 14 H -0.282 1.282 15 H -0.263 1.263 16 C 0.529 3.471 17 O -0.542 6.542 18 C 0.063 3.937 19 H 0.113 0.887 20 C -0.176 4.176 21 O -0.288 6.288 22 C 0.138 3.862 23 C -0.207 4.207 24 C -0.078 4.078 25 C -0.167 4.167 26 C -0.085 4.085 27 C -0.156 4.156 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.062 0.938 39 H 0.044 0.956 40 H 0.029 0.971 41 H 0.267 0.733 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.134 0.866 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.125 0.875 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.028 -7.548 5.702 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.173 4.173 3 C 0.100 3.900 4 C -0.212 4.212 5 C -0.217 4.217 6 N -0.306 5.306 7 C 0.073 3.927 8 C -0.578 4.578 9 H 0.098 0.902 10 C -0.125 4.125 11 N -0.524 5.524 12 Si 0.689 3.311 13 H -0.198 1.198 14 H -0.208 1.208 15 H -0.187 1.187 16 C 0.316 3.684 17 O -0.420 6.420 18 C 0.004 3.996 19 H 0.130 0.870 20 C -0.233 4.233 21 O -0.200 6.200 22 C 0.092 3.908 23 C -0.226 4.226 24 C -0.096 4.096 25 C -0.185 4.185 26 C -0.103 4.103 27 C -0.174 4.174 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.102 0.898 45 H 0.152 0.848 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.143 0.857 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.557 -8.030 5.728 10.866 hybrid contribution -1.086 0.801 -0.308 1.384 sum -5.643 -7.229 5.420 10.653 Atomic orbital electron populations 1.21743 0.96212 1.00585 1.01860 1.21956 0.95956 0.96581 1.02838 1.20206 0.93109 0.90612 0.86062 1.22170 1.01490 1.02769 0.94728 1.22194 0.94622 1.02926 1.01987 1.47880 1.52203 1.26407 1.04103 1.20098 0.92144 0.82778 0.97703 1.21362 0.96153 0.89419 1.50870 0.90210 1.24858 0.97409 0.95818 0.94435 1.69883 1.35006 0.99030 1.48460 0.87055 0.86278 0.78689 0.79083 1.19793 1.20758 1.18738 1.19664 0.81448 0.83846 0.83469 1.90580 1.38743 1.28347 1.84320 1.22316 0.93352 1.01531 0.82446 0.86967 1.22385 0.93823 1.03268 1.03854 1.86154 1.74199 1.43337 1.16308 1.19127 0.94424 0.89531 0.87731 1.21451 1.04922 0.95498 1.00699 1.20958 0.97770 0.98602 0.92305 1.21001 1.01734 0.97875 0.97882 1.20891 0.97808 0.93898 0.97685 1.20412 1.04230 1.02033 0.90766 0.93519 0.92848 0.92832 0.91874 0.90057 0.89682 0.92516 0.92284 0.91069 0.92928 0.91865 0.93861 0.95298 0.92314 0.91090 0.91275 0.89761 0.84836 0.85905 0.86270 0.85730 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.45 37.16 0.35 -1.75 16 2 C -0.14 -2.11 4.63 -26.73 -0.12 -2.24 16 3 C 0.18 3.24 0.73 -131.82 -0.10 3.14 16 4 C -0.15 -2.54 6.98 37.16 0.26 -2.28 16 5 C -0.16 -2.87 8.36 37.16 0.31 -2.56 16 6 N -0.57 -11.14 1.52 -160.18 -0.24 -11.38 16 7 C 0.19 3.99 3.13 -5.19 -0.02 3.98 16 8 C -0.54 -13.44 8.97 -34.44 -0.31 -13.75 16 9 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 10 C 0.08 2.03 5.47 -17.82 -0.10 1.93 16 11 N -0.89 -24.90 13.96 55.43 0.77 -24.12 16 12 Si 0.86 18.80 27.47 -169.99 -4.67 14.14 16 13 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 14 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 15 H -0.26 -5.36 6.54 56.52 0.37 -4.99 16 16 C 0.53 10.73 6.01 -10.99 -0.07 10.66 16 17 O -0.54 -11.97 12.90 -13.99 -0.18 -12.15 16 18 C 0.06 1.17 1.80 -27.88 -0.05 1.12 16 19 H 0.11 2.22 5.29 -51.93 -0.27 1.94 16 20 C -0.18 -2.69 8.86 37.16 0.33 -2.36 16 21 O -0.29 -5.48 9.37 -38.97 -0.37 -5.84 16 22 C 0.14 2.34 6.56 -39.21 -0.26 2.09 16 23 C -0.21 -3.32 8.23 -39.43 -0.32 -3.65 16 24 C -0.08 -1.09 10.04 -39.61 -0.40 -1.49 16 25 C -0.17 -2.08 10.04 -39.56 -0.40 -2.48 16 26 C -0.08 -1.06 10.04 -39.61 -0.40 -1.46 16 27 C -0.16 -2.31 9.99 -39.43 -0.39 -2.70 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.82 7.15 -51.93 -0.37 0.45 16 30 H 0.05 0.72 6.57 -51.93 -0.34 0.38 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.43 6.31 -51.93 -0.33 1.11 16 33 H 0.08 1.62 7.02 -51.93 -0.36 1.26 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.93 5.42 -51.93 -0.28 0.65 16 36 H 0.07 1.38 6.36 -51.93 -0.33 1.05 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.88 4.88 -51.93 -0.25 0.63 16 40 H 0.03 0.57 3.82 -51.93 -0.20 0.38 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.07 0.98 7.07 -51.93 -0.37 0.61 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.08 1.24 5.99 -51.93 -0.31 0.93 16 45 H 0.13 2.17 5.56 -52.49 -0.29 1.88 16 46 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 47 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 48 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 49 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -29.00 374.14 -8.25 -37.25 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -7.53 Total: 10.26 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -1.68 Total: -13.79 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.53 Total: -35.51 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.55 Total: -18.00 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -4.67 Total: 14.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.00 -8.25 -37.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187526220.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.399 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds