Wall clock time and date at job start Tue Mar 31 2020 12:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46959 * 2 1 4 4 C 1.52995 * 109.47039 * 295.38343 * 3 2 1 5 5 C 1.52995 * 109.46975 * 175.38505 * 3 2 1 6 6 N 1.46499 * 109.47126 * 55.38440 * 3 2 1 7 7 C 1.46493 * 120.00401 * 238.69578 * 6 3 2 8 8 C 1.50706 * 109.46829 * 270.00477 * 7 6 3 9 9 H 1.08001 * 119.99816 * 359.97438 * 8 7 6 10 10 C 1.37873 * 119.99710 * 180.02562 * 8 7 6 11 11 N 1.31522 * 120.00256 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99827 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46952 * 90.00045 * 12 10 8 14 14 H 1.48506 * 109.47104 * 209.99690 * 12 10 8 15 15 H 1.48498 * 109.47138 * 329.99900 * 12 10 8 16 16 C 1.34781 * 119.99644 * 58.69135 * 6 3 2 17 17 O 1.21279 * 120.00286 * 5.34750 * 16 6 3 18 18 C 1.50705 * 119.99919 * 185.33903 * 16 6 3 19 19 C 1.50695 * 109.47205 * 175.53605 * 18 16 6 20 20 C 1.38287 * 119.97074 * 270.02527 * 19 18 16 21 21 C 1.38248 * 120.11141 * 180.02562 * 20 19 18 22 22 C 1.38165 * 120.05511 * 359.67299 * 21 20 19 23 23 C 1.38717 * 119.94378 * 0.57659 * 22 21 20 24 24 O 1.35896 * 120.05527 * 179.71752 * 23 22 21 25 25 C 1.42900 * 117.00277 * 359.73450 * 24 23 22 26 26 C 1.38124 * 119.97659 * 89.99790 * 19 18 16 27 27 H 1.09008 * 109.46729 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47439 * 299.99658 * 1 2 3 29 29 H 1.08999 * 109.47347 * 60.00422 * 1 2 3 30 30 H 1.08999 * 109.47140 * 239.99912 * 2 1 3 31 31 H 1.09003 * 109.46910 * 119.99753 * 2 1 3 32 32 H 1.08998 * 109.47402 * 179.97438 * 4 3 2 33 33 H 1.08998 * 109.47462 * 300.00476 * 4 3 2 34 34 H 1.09009 * 109.46890 * 60.00114 * 4 3 2 35 35 H 1.09000 * 109.47723 * 298.04936 * 5 3 2 36 36 H 1.09006 * 109.47143 * 58.04781 * 5 3 2 37 37 H 1.08993 * 109.47214 * 178.04223 * 5 3 2 38 38 H 1.08998 * 109.47135 * 29.99709 * 7 6 3 39 39 H 1.08998 * 109.47473 * 150.00357 * 7 6 3 40 40 H 0.97001 * 119.99473 * 180.02562 * 11 10 8 41 41 H 1.08996 * 109.46644 * 55.53422 * 18 16 6 42 42 H 1.09001 * 109.47191 * 295.53789 * 18 16 6 43 43 H 1.07997 * 119.94450 * 359.97438 * 20 19 18 44 44 H 1.07997 * 119.97384 * 179.97438 * 21 20 19 45 45 H 1.07997 * 120.02978 * 180.30153 * 22 21 20 46 46 H 1.09001 * 109.47265 * 59.99141 * 25 24 23 47 47 H 1.08997 * 109.47496 * 179.97438 * 25 24 23 48 48 H 1.09001 * 109.46855 * 299.99590 * 25 24 23 49 49 H 1.08004 * 120.02259 * 0.02562 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6270 2.1294 -1.3032 5 6 3.5655 1.4441 0.1161 6 7 1.4630 2.1645 1.1367 7 6 0.6582 3.3671 0.9085 8 6 1.5534 4.5795 0.9165 9 1 2.6155 4.4654 1.0761 10 6 1.0163 5.8342 0.7212 11 7 -0.2771 5.9730 0.5274 12 14 2.1258 7.3370 0.7318 13 1 2.6123 7.6028 -0.6458 14 1 1.3623 8.5125 1.2225 15 1 3.2846 7.0905 1.6272 16 6 1.6725 1.7221 2.3925 17 8 2.4169 0.7850 2.5890 18 6 0.9820 2.3920 3.5524 19 6 1.2956 1.6451 4.8232 20 6 0.4787 0.6079 5.2344 21 6 0.7634 -0.0789 6.4000 22 6 1.8693 0.2653 7.1534 23 6 2.6874 1.3087 6.7458 24 8 3.7724 1.6529 7.4881 25 6 4.0077 0.9011 8.6803 26 6 2.3991 1.9967 5.5759 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.9898 3.1572 -1.3031 33 1 2.0562 1.5923 -2.1490 34 1 0.5400 2.1283 -1.3859 35 1 3.8586 0.9857 1.0606 36 1 3.9934 0.8774 -0.7110 37 1 3.9315 2.4702 0.0811 38 1 0.1576 3.2916 -0.0567 39 1 -0.0873 3.4607 1.6982 40 1 -0.6548 6.8558 0.3897 41 1 -0.0951 2.3884 3.3853 42 1 1.3327 3.4204 3.6394 43 1 -0.3836 0.3345 4.6445 44 1 0.1237 -0.8883 6.7193 45 1 2.0940 -0.2747 8.0613 46 1 4.1482 -0.1494 8.4257 47 1 4.9024 1.2772 9.1764 48 1 3.1521 1.0017 9.3481 49 1 3.0368 2.8068 5.2542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187526256.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:48 Heat of formation + Delta-G solvation = -56.332162 kcal Electronic energy + Delta-G solvation = -28231.306397 eV Core-core repulsion = 24544.632452 eV Total energy + Delta-G solvation = -3686.673944 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.14261 -39.53847 -37.50534 -36.10381 -33.75423 -32.29427 -31.72352 -30.33666 -29.90360 -27.72612 -27.45966 -26.74539 -26.20730 -23.15757 -22.54536 -22.33045 -21.56732 -19.96734 -17.73364 -17.35327 -16.61078 -16.12888 -15.94998 -15.75659 -15.63440 -15.42472 -14.66837 -14.34847 -14.13720 -14.00680 -13.57767 -13.32590 -13.01904 -12.81067 -12.56477 -12.34792 -12.28570 -11.94457 -11.86312 -11.78423 -11.46417 -11.41684 -11.20875 -11.11501 -11.08958 -10.96519 -10.93248 -10.70806 -10.60416 -10.47384 -10.26254 -10.17450 -9.96882 -9.60870 -8.84830 -8.57082 -8.40286 -7.98675 -7.57684 -6.16030 -4.22498 1.54798 1.68873 3.23610 3.31409 3.33646 3.34582 3.51494 3.83084 4.15637 4.36492 4.88109 4.98092 5.07204 5.10411 5.16532 5.25764 5.27739 5.37922 5.46092 5.54885 5.56650 5.59878 5.73925 5.75355 5.83537 5.95228 6.05296 6.09339 6.22096 6.25501 6.27271 6.30729 6.34569 6.48567 6.51395 6.53700 6.61420 6.65362 6.70913 6.86322 6.92074 6.95844 6.99704 7.04167 7.27666 7.54587 7.67749 7.80917 8.10393 8.45576 8.84599 9.13330 9.45428 10.90140 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010701 B = 0.004528 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.931741 B = 6182.473342 C = 7634.443645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.182 3.818 4 C -0.150 4.150 5 C -0.160 4.160 6 N -0.585 5.585 7 C 0.231 3.769 8 C -0.532 4.532 9 H 0.060 0.940 10 C 0.066 3.934 11 N -0.891 5.891 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.286 1.286 15 H -0.273 1.273 16 C 0.524 3.476 17 O -0.562 6.562 18 C -0.103 4.103 19 C -0.009 4.009 20 C -0.144 4.144 21 C -0.083 4.083 22 C -0.217 4.217 23 C 0.123 3.877 24 O -0.319 6.319 25 C 0.030 3.970 26 C -0.133 4.133 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.044 0.956 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.099 0.901 42 H 0.112 0.888 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.053 0.947 47 H 0.096 0.904 48 H 0.052 0.948 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -10.467 8.194 13.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.097 3.903 4 C -0.208 4.208 5 C -0.218 4.218 6 N -0.316 5.316 7 C 0.111 3.889 8 C -0.571 4.571 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.530 5.530 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.198 1.198 16 C 0.312 3.688 17 O -0.443 6.443 18 C -0.143 4.143 19 C -0.010 4.010 20 C -0.162 4.162 21 C -0.101 4.101 22 C -0.236 4.236 23 C 0.079 3.921 24 O -0.233 6.233 25 C -0.066 4.066 26 C -0.152 4.152 27 H 0.062 0.938 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.074 0.926 41 H 0.117 0.883 42 H 0.131 0.869 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.071 0.929 47 H 0.114 0.886 48 H 0.071 0.929 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.043 -10.641 8.198 13.587 hybrid contribution 0.408 0.895 0.091 0.989 sum 2.451 -9.746 8.289 13.027 Atomic orbital electron populations 1.21718 0.96114 1.00284 1.02065 1.21915 0.95999 0.96787 1.02383 1.20139 0.92855 0.90722 0.86572 1.22128 1.01790 1.02128 0.94718 1.22200 0.95151 1.01950 1.02485 1.48279 1.51227 1.28019 1.04066 1.19520 0.90594 0.80304 0.98471 1.21496 0.94648 0.90974 1.49945 0.92172 1.24910 0.94974 0.98885 0.94910 1.69920 1.10758 1.23804 1.48490 0.86590 0.80706 0.82348 0.78421 1.20605 1.21138 1.19800 1.20090 0.81633 0.83217 0.83883 1.90556 1.38370 1.30272 1.85088 1.20732 1.02400 1.01044 0.90119 1.19288 0.93106 0.94490 0.94092 1.20897 1.00985 0.96991 0.97355 1.20794 0.96139 0.98713 0.94502 1.21087 0.98794 1.00755 1.02930 1.18933 0.87030 0.94327 0.91850 1.86070 1.43486 1.57820 1.35935 1.22987 1.01845 0.96250 0.85477 1.20274 0.98860 1.02407 0.93667 0.93817 0.92710 0.92817 0.92324 0.90349 0.90221 0.93084 0.91978 0.90637 0.93349 0.92534 0.93822 0.94709 0.92621 0.88279 0.86938 0.86205 0.86202 0.86071 0.92877 0.88580 0.92903 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.45 37.16 0.35 -1.89 16 2 C -0.13 -2.19 4.67 -26.73 -0.12 -2.31 16 3 C 0.18 3.32 0.73 -131.82 -0.10 3.22 16 4 C -0.15 -2.64 6.96 37.16 0.26 -2.38 16 5 C -0.16 -2.91 8.45 37.15 0.31 -2.60 16 6 N -0.58 -11.74 1.50 -160.19 -0.24 -11.98 16 7 C 0.23 5.19 4.41 -5.19 -0.02 5.17 16 8 C -0.53 -13.29 8.66 -34.44 -0.30 -13.59 16 9 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -23.89 13.29 55.43 0.74 -23.15 16 12 Si 0.89 20.36 29.54 -169.99 -5.02 15.33 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.52 10.52 6.80 -10.98 -0.07 10.45 16 17 O -0.56 -12.13 12.31 5.56 0.07 -12.06 16 18 C -0.10 -1.87 4.37 -29.04 -0.13 -2.00 16 19 C -0.01 -0.16 4.38 -104.65 -0.46 -0.61 16 20 C -0.14 -2.19 9.70 -39.56 -0.38 -2.57 16 21 C -0.08 -1.12 10.04 -39.60 -0.40 -1.52 16 22 C -0.22 -2.93 9.04 -39.43 -0.36 -3.29 16 23 C 0.12 1.92 6.69 -39.22 -0.26 1.66 16 24 O -0.32 -4.61 10.50 -19.41 -0.20 -4.82 16 25 C 0.03 0.28 9.81 101.05 0.99 1.27 16 26 C -0.13 -2.29 9.64 -39.44 -0.38 -2.67 16 27 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 28 H 0.05 0.92 7.26 -51.93 -0.38 0.55 16 29 H 0.05 0.81 6.55 -51.93 -0.34 0.47 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.08 1.44 6.40 -51.93 -0.33 1.11 16 32 H 0.08 1.58 7.12 -51.93 -0.37 1.21 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.10 5.35 -51.92 -0.28 0.82 16 35 H 0.07 1.50 6.04 -51.93 -0.31 1.19 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 1.03 5.75 -51.93 -0.30 0.73 16 39 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 40 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.10 1.67 7.30 -51.93 -0.38 1.30 16 42 H 0.11 2.14 8.08 -51.93 -0.42 1.72 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.23 16 44 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.12 1.29 6.30 -52.49 -0.33 0.96 16 46 H 0.05 0.45 7.65 -51.93 -0.40 0.06 16 47 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 49 H 0.13 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 384.65 15.07 5.80 5.80 Total: -1.00 -28.65 384.65 -7.94 -36.59 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.91 Total: 6.37 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -1.16 Total: -12.07 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.50 Total: -35.13 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.14 Total: -16.88 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.65 -7.94 -36.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187526256.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.743 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds