Wall clock time and date at job start Tue Mar 31 2020 12:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47320 * 2 1 4 4 C 1.53004 * 109.46874 * 300.00105 * 3 2 1 5 5 C 1.52997 * 109.47320 * 179.97438 * 3 2 1 6 6 N 1.46499 * 109.47502 * 59.99606 * 3 2 1 7 7 C 1.46507 * 119.99633 * 68.49643 * 6 3 2 8 8 C 1.50699 * 109.47088 * 80.25938 * 7 6 3 9 9 H 1.08005 * 119.99998 * 359.97438 * 8 7 6 10 10 C 1.37877 * 119.99925 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99665 * 179.97438 * 10 8 7 12 12 Si 1.86795 * 119.99880 * 0.02562 * 10 8 7 13 13 H 1.48504 * 109.47256 * 90.00347 * 12 10 8 14 14 H 1.48502 * 109.46913 * 209.99445 * 12 10 8 15 15 H 1.48499 * 109.47400 * 329.99849 * 12 10 8 16 16 C 1.34779 * 120.00419 * 248.50058 * 6 3 2 17 17 O 1.21546 * 119.99675 * 2.23797 * 16 6 3 18 18 C 1.47843 * 119.99827 * 182.24385 * 16 6 3 19 19 C 1.39591 * 120.14667 * 21.81699 * 18 16 6 20 20 C 1.37944 * 119.85430 * 179.79083 * 19 18 16 21 21 C 1.38377 * 120.14215 * 0.49148 * 20 19 18 22 22 C 1.38342 * 120.29268 * 359.73990 * 21 20 19 23 23 C 1.50702 * 119.92685 * 179.97438 * 22 21 20 24 24 O 1.42901 * 109.47097 * 270.02559 * 23 22 21 25 25 C 1.42900 * 113.99614 * 180.02562 * 24 23 22 26 26 C 1.37982 * 120.14340 * 0.02562 * 22 21 20 27 27 H 1.09004 * 109.47679 * 60.00115 * 1 2 3 28 28 H 1.08998 * 109.47644 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47181 * 300.00412 * 1 2 3 30 30 H 1.09003 * 109.46683 * 239.99637 * 2 1 3 31 31 H 1.09004 * 109.46963 * 120.00093 * 2 1 3 32 32 H 1.09005 * 109.47111 * 173.22990 * 4 3 2 33 33 H 1.09000 * 109.47027 * 293.22058 * 4 3 2 34 34 H 1.08999 * 109.47384 * 53.22615 * 4 3 2 35 35 H 1.08997 * 109.47352 * 300.00151 * 5 3 2 36 36 H 1.09010 * 109.46827 * 60.00030 * 5 3 2 37 37 H 1.09005 * 109.47298 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.46778 * 320.25738 * 7 6 3 39 39 H 1.08997 * 109.46792 * 200.25764 * 7 6 3 40 40 H 0.97005 * 119.99959 * 179.97438 * 11 10 8 41 41 H 1.07998 * 120.07488 * 0.02562 * 19 18 16 42 42 H 1.07995 * 119.92971 * 180.21235 * 20 19 18 43 43 H 1.08002 * 119.85733 * 179.76646 * 21 20 19 44 44 H 1.08997 * 109.46935 * 30.02413 * 23 22 21 45 45 H 1.09003 * 109.46793 * 150.02554 * 23 22 21 46 46 H 1.09004 * 109.47354 * 299.99287 * 25 24 23 47 47 H 1.08999 * 109.47726 * 59.99948 * 25 24 23 48 48 H 1.09008 * 109.46824 * 179.97438 * 25 24 23 49 49 H 1.08006 * 120.06749 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5300 2.1637 -1.2493 5 6 3.5700 1.4424 0.0006 6 7 1.5517 2.1331 1.1961 7 6 2.0521 1.7501 2.5187 8 6 3.3969 2.3891 2.7514 9 1 3.8353 3.0173 1.9900 10 6 4.0677 2.1717 3.9362 11 7 5.2415 2.7290 4.1390 12 14 3.3098 1.0846 5.2526 13 1 3.7379 -0.3215 5.0404 14 1 3.7598 1.5421 6.5918 15 1 1.8294 1.1688 5.1724 16 6 0.6420 3.1209 1.0798 17 8 0.1965 3.4111 -0.0132 18 6 0.1863 3.8513 2.2817 19 6 0.9748 3.8670 3.4335 20 6 0.5457 4.5540 4.5501 21 6 -0.6681 5.2182 4.5334 22 6 -1.4566 5.2026 3.3967 23 6 -2.7773 5.9283 3.3879 24 8 -3.8098 5.0437 3.8276 25 6 -5.1099 5.6362 3.8557 26 6 -1.0368 4.5232 2.2716 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.7910 3.2204 -1.1908 33 1 1.9889 1.7246 -2.1351 34 1 0.4467 2.0599 -1.3120 35 1 3.9330 0.9287 0.8908 36 1 3.9337 0.9284 -0.8892 37 1 3.9334 2.4701 0.0002 38 1 2.1512 0.6658 2.5696 39 1 1.3524 2.0873 3.2834 40 1 5.7133 2.5764 4.9727 41 1 1.9204 3.3455 3.4492 42 1 1.1563 4.5698 5.4407 43 1 -1.0013 5.7515 5.4115 44 1 -2.7247 6.7867 4.0575 45 1 -2.9976 6.2695 2.3763 46 1 -5.1060 6.4888 4.5349 47 1 -5.3784 5.9711 2.8538 48 1 -5.8371 4.9006 4.1996 49 1 -1.6531 4.5122 1.3847 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187526687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:53 Heat of formation + Delta-G solvation = -27.474625 kcal Electronic energy + Delta-G solvation = -28682.405021 eV Core-core repulsion = 24996.982433 eV Total energy + Delta-G solvation = -3685.422588 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.92757 -40.04936 -38.47259 -37.83675 -35.94645 -34.19601 -32.69604 -32.01025 -31.16838 -30.10912 -28.21281 -27.85190 -26.16466 -25.27509 -24.27311 -24.15007 -22.56916 -21.54911 -19.58296 -19.07119 -17.86424 -17.59632 -17.31133 -16.98964 -16.80744 -16.45257 -16.28356 -15.91155 -15.45858 -15.22242 -14.94712 -14.76677 -14.59325 -14.47650 -14.28301 -14.05675 -13.68392 -13.45898 -13.13883 -13.06990 -12.96907 -12.83179 -12.61874 -12.57941 -12.47873 -12.28175 -12.26336 -12.09001 -12.02026 -11.78541 -11.51720 -11.36422 -11.23333 -10.80969 -10.63664 -10.00942 -9.88432 -9.65020 -9.31551 -8.31678 -6.35803 -0.00929 0.36706 1.36149 1.41007 1.48060 1.91685 2.22230 2.30684 2.72740 2.99132 3.22238 3.61958 3.88594 3.91436 3.97541 4.03927 4.18097 4.21434 4.31154 4.40613 4.42904 4.54271 4.56873 4.58489 4.61874 4.65911 4.69476 4.77124 4.83713 4.87955 4.88390 4.94011 4.99411 5.01926 5.05805 5.06580 5.15239 5.30630 5.34090 5.38292 5.48241 5.50526 5.55257 5.62193 5.66456 5.89984 6.03196 6.18047 6.23199 6.63992 6.74537 7.21816 7.37205 8.82369 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.005454 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.022213 B = 5132.754657 C = 6825.906739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.163 3.837 4 C -0.118 4.118 5 C -0.137 4.137 6 N -0.573 5.573 7 C 0.189 3.811 8 C -0.525 4.525 9 H 0.048 0.952 10 C 0.038 3.962 11 N -0.924 5.924 12 Si 0.913 3.087 13 H -0.265 1.265 14 H -0.278 1.278 15 H -0.242 1.242 16 C 0.551 3.449 17 O -0.572 6.572 18 C -0.162 4.162 19 C -0.128 4.128 20 C -0.149 4.149 21 C -0.070 4.070 22 C -0.120 4.120 23 C 0.111 3.889 24 O -0.414 6.414 25 C 0.024 3.976 26 C -0.053 4.053 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.029 0.971 38 H 0.033 0.967 39 H 0.065 0.935 40 H 0.271 0.729 41 H 0.187 0.813 42 H 0.136 0.864 43 H 0.154 0.846 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.050 0.950 48 H 0.094 0.906 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.910 1.029 -0.525 14.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.162 4.162 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.195 4.195 6 N -0.301 5.301 7 C 0.067 3.933 8 C -0.563 4.563 9 H 0.066 0.934 10 C -0.163 4.163 11 N -0.563 5.563 12 Si 0.736 3.264 13 H -0.190 1.190 14 H -0.204 1.204 15 H -0.166 1.166 16 C 0.342 3.658 17 O -0.455 6.455 18 C -0.165 4.165 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.088 4.088 22 C -0.120 4.120 23 C 0.035 3.965 24 O -0.334 6.334 25 C -0.072 4.072 26 C -0.072 4.072 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.203 0.797 42 H 0.154 0.846 43 H 0.172 0.828 44 H 0.100 0.900 45 H 0.084 0.916 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.112 0.888 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.929 0.975 -0.925 14.989 hybrid contribution 0.496 0.032 0.688 0.849 sum -14.433 1.007 -0.237 14.470 Atomic orbital electron populations 1.21703 0.95449 1.01669 1.01084 1.21873 0.96554 0.94696 1.03076 1.20697 0.93990 0.92793 0.84650 1.22170 1.02124 0.98483 0.94698 1.22088 0.94086 1.01027 1.02307 1.47827 1.39719 1.34192 1.08409 1.20477 0.94543 0.96317 0.81938 1.21308 1.02210 1.30295 1.02450 0.93422 1.25554 0.94705 0.96159 0.99908 1.70006 1.14993 1.44561 1.26691 0.86221 0.80919 0.80077 0.79209 1.18974 1.20374 1.16572 1.18520 0.79079 0.79771 0.88477 1.90699 1.59357 1.68277 1.27202 1.20110 0.97753 1.03579 0.95053 1.23831 1.02949 0.95710 0.92003 1.21424 0.97516 0.98664 0.99040 1.21535 0.93021 0.96572 0.97707 1.19719 0.96933 1.01436 0.93911 1.21333 0.83547 0.91341 1.00285 1.87948 1.17413 1.39919 1.88131 1.22954 0.83212 0.99655 1.01340 1.21130 0.93981 0.93651 0.98427 0.92482 0.91090 0.95183 0.88849 0.92069 0.94753 0.92489 0.90687 0.92098 0.90535 0.95133 0.94872 0.91802 0.92003 0.79702 0.84579 0.82806 0.89970 0.91581 0.92465 0.93161 0.88766 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.17 9.36 71.98 0.67 -3.50 16 2 C -0.12 -3.77 4.95 30.59 0.15 -3.62 16 3 C 0.16 5.97 0.80 3.60 0.00 5.97 16 4 C -0.12 -4.21 6.69 71.98 0.48 -3.73 16 5 C -0.14 -5.21 7.26 71.98 0.52 -4.69 16 6 N -0.57 -23.91 1.75 -782.45 -1.37 -25.28 16 7 C 0.19 8.26 3.22 85.63 0.28 8.54 16 8 C -0.52 -26.50 5.81 25.60 0.15 -26.35 16 9 H 0.05 2.77 6.72 -2.91 -0.02 2.75 16 10 C 0.04 1.96 5.30 84.65 0.45 2.41 16 11 N -0.92 -51.88 13.96 21.45 0.30 -51.58 16 12 Si 0.91 38.61 27.31 68.60 1.87 40.48 16 13 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 14 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.24 -9.57 6.54 99.48 0.65 -8.91 16 16 C 0.55 23.80 6.99 86.79 0.61 24.41 16 17 O -0.57 -25.35 11.93 -3.86 -0.05 -25.39 16 18 C -0.16 -6.62 5.63 -20.09 -0.11 -6.73 16 19 C -0.13 -5.25 7.55 22.53 0.17 -5.08 16 20 C -0.15 -5.11 10.03 22.23 0.22 -4.89 16 21 C -0.07 -2.03 9.69 22.33 0.22 -1.81 16 22 C -0.12 -3.58 5.50 -19.90 -0.11 -3.69 16 23 C 0.11 2.52 6.06 71.24 0.43 2.95 16 24 O -0.41 -10.23 10.69 -148.98 -1.59 -11.82 16 25 C 0.02 0.38 11.01 113.37 1.25 1.63 16 26 C -0.05 -1.87 9.24 22.53 0.21 -1.67 16 27 H 0.06 1.68 6.29 -2.39 -0.01 1.66 16 28 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.03 1.00 7.33 -2.39 -0.02 0.99 16 30 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 1.93 7.04 -2.38 -0.02 1.91 16 32 H 0.03 1.40 6.87 -2.38 -0.02 1.38 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 2.76 4.48 -2.39 -0.01 2.75 16 35 H 0.06 2.54 6.53 -2.39 -0.02 2.53 16 36 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 37 H 0.03 1.30 7.32 -2.38 -0.02 1.28 16 38 H 0.03 1.41 6.36 -2.39 -0.02 1.39 16 39 H 0.06 2.83 3.35 -2.39 -0.01 2.82 16 40 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 41 H 0.19 8.50 2.21 -2.91 -0.01 8.49 16 42 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 43 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 44 H 0.08 1.43 8.08 -2.39 -0.02 1.42 16 45 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 46 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 47 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 49 H 0.13 4.35 7.81 -2.91 -0.02 4.33 16 Total: -1.00 -62.54 371.35 5.64 -56.89 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.89 Total: 36.55 kcal Atomic # 6 Polarization: -25.44 SS G_CDS: 5.59 Total: -19.86 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -1.07 Total: -76.85 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.64 Total: -37.22 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.87 Total: 40.48 kcal Total: -62.54 5.64 -56.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187526687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.419 kcal (2) G-P(sol) polarization free energy of solvation -62.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds