Wall clock time and date at job start Tue Mar 31 2020 12:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46829 * 173.28484 * 3 2 1 5 5 C 1.53001 * 109.46704 * 53.28374 * 3 2 1 6 6 N 1.46493 * 109.47284 * 293.28552 * 3 2 1 7 7 C 1.46496 * 120.00185 * 106.74149 * 6 3 2 8 8 C 1.50701 * 109.47300 * 254.48920 * 7 6 3 9 9 H 1.07994 * 120.00215 * 358.07392 * 8 7 6 10 10 C 1.37880 * 119.99810 * 178.07644 * 8 7 6 11 11 N 1.31520 * 120.00015 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46999 * 89.99902 * 12 10 8 14 14 H 1.48493 * 109.47177 * 210.00187 * 12 10 8 15 15 H 1.48503 * 109.46821 * 329.99997 * 12 10 8 16 16 C 1.34780 * 119.99973 * 286.74574 * 6 3 2 17 17 O 1.21552 * 120.00368 * 187.04971 * 16 6 3 18 18 C 1.47860 * 120.00159 * 7.04725 * 16 6 3 19 19 C 1.39603 * 120.11423 * 2.05096 * 18 16 6 20 20 C 1.37966 * 119.96721 * 180.23020 * 19 18 16 21 21 C 1.38291 * 120.20240 * 359.52152 * 20 19 18 22 22 C 1.50701 * 119.87851 * 180.23318 * 21 20 19 23 23 C 1.38807 * 120.24078 * 0.45616 * 21 20 19 24 24 O 1.35907 * 119.98721 * 179.77475 * 23 21 20 25 25 C 1.42909 * 117.00087 * 180.02562 * 24 23 21 26 26 C 1.38496 * 120.02941 * 359.79587 * 23 21 20 27 27 H 1.09000 * 109.47284 * 81.43633 * 1 2 3 28 28 H 1.08998 * 109.47129 * 201.43530 * 1 2 3 29 29 H 1.08998 * 109.47489 * 321.43518 * 1 2 3 30 30 H 1.09002 * 109.47275 * 240.00760 * 2 1 3 31 31 H 1.08992 * 109.47452 * 120.00100 * 2 1 3 32 32 H 1.08999 * 109.47162 * 211.32092 * 4 3 2 33 33 H 1.09002 * 109.47136 * 331.31386 * 4 3 2 34 34 H 1.08994 * 109.47281 * 91.31675 * 4 3 2 35 35 H 1.08995 * 109.47550 * 299.51522 * 5 3 2 36 36 H 1.08997 * 109.46900 * 59.51993 * 5 3 2 37 37 H 1.09000 * 109.46527 * 179.51698 * 5 3 2 38 38 H 1.08994 * 109.46911 * 14.49304 * 7 6 3 39 39 H 1.09007 * 109.46667 * 134.49088 * 7 6 3 40 40 H 0.97000 * 119.99936 * 180.02562 * 11 10 8 41 41 H 1.07997 * 120.02124 * 359.95153 * 19 18 16 42 42 H 1.07993 * 119.90044 * 179.74167 * 20 19 18 43 43 H 1.08997 * 109.47314 * 270.22243 * 22 21 20 44 44 H 1.09003 * 109.47408 * 30.22721 * 22 21 20 45 45 H 1.08998 * 109.46952 * 150.22549 * 22 21 20 46 46 H 1.09001 * 109.46337 * 299.99514 * 25 24 23 47 47 H 1.08994 * 109.47225 * 59.99779 * 25 24 23 48 48 H 1.09003 * 109.46956 * 180.02562 * 25 24 23 49 49 H 1.07996 * 120.10421 * 180.02562 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5606 1.4459 0.1687 5 6 1.3968 2.2108 1.1564 6 7 1.6879 2.0850 -1.2686 7 6 0.6200 3.0869 -1.3108 8 6 -0.6081 2.4858 -1.9445 9 1 -0.5848 1.4700 -2.3102 10 6 -1.7614 3.2329 -2.0573 11 7 -1.7896 4.4703 -1.6124 12 14 -3.2835 2.4881 -2.8434 13 1 -4.1082 1.8295 -1.7988 14 1 -4.0769 3.5590 -3.4982 15 1 -2.8754 1.4837 -3.8582 16 6 2.3465 1.7542 -2.3971 17 8 2.1455 2.3751 -3.4225 18 6 3.3138 0.6358 -2.3877 19 6 3.5151 -0.1064 -1.2226 20 6 4.4219 -1.1462 -1.2160 21 6 5.1257 -1.4628 -2.3635 22 6 6.1105 -2.6034 -2.3495 23 6 4.9319 -0.7308 -3.5268 24 8 5.6298 -1.0434 -4.6504 25 6 5.3807 -0.2481 -5.8112 26 6 4.0279 0.3184 -3.5431 27 1 -0.3634 0.1530 -1.0162 28 1 -0.3633 -0.9566 0.3756 29 1 -0.3634 0.8035 0.6406 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8647 2.3447 0.7051 33 1 3.8654 0.5650 0.7338 34 1 4.0350 1.4302 -0.8125 35 1 0.3140 2.2158 1.0316 36 1 1.6517 1.7278 2.0996 37 1 1.7666 3.2361 1.1615 38 1 0.3846 3.4099 -0.2968 39 1 0.9493 3.9443 -1.8981 40 1 -2.6011 4.9957 -1.6915 41 1 2.9647 0.1361 -0.3256 42 1 4.5798 -1.7170 -0.3129 43 1 7.0940 -2.2309 -2.0630 44 1 5.7841 -3.3565 -1.6323 45 1 6.1658 -3.0479 -3.3432 46 1 4.3294 -0.3282 -6.0877 47 1 5.6218 0.7930 -5.5969 48 1 6.0006 -0.6030 -6.6346 49 1 3.8758 0.8884 -4.4476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187529815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:25 Heat of formation + Delta-G solvation = 103.110465 kcal Electronic energy + Delta-G solvation = -29243.843967 eV Core-core repulsion = 25564.083974 eV Total energy + Delta-G solvation = -3679.759993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.23156 -39.57814 -37.45946 -36.86755 -33.78862 -32.56125 -31.92860 -30.87677 -29.75385 -28.45979 -27.67670 -26.54131 -26.13624 -23.77819 -23.10083 -21.91221 -21.15272 -20.87026 -18.61206 -16.93665 -16.49055 -16.33654 -16.00304 -15.74919 -15.40566 -15.13145 -14.89133 -14.41044 -14.31042 -13.96823 -13.81829 -13.44595 -13.30817 -12.97728 -12.88845 -12.59174 -12.28195 -12.07982 -12.00343 -11.88904 -11.72477 -11.62156 -11.27389 -11.19222 -10.99490 -10.93641 -10.70432 -10.68259 -10.49512 -10.28380 -10.22850 -9.98944 -9.44865 -9.16885 -8.93749 -8.67971 -8.39308 -7.69013 -7.54323 -6.02061 -4.03642 1.09988 1.58923 3.30854 3.33372 3.37335 3.38464 3.43950 3.81092 4.18219 4.46579 4.68765 4.76131 4.88885 4.95010 5.06464 5.10327 5.14250 5.20336 5.31969 5.33808 5.40648 5.50306 5.56847 5.60438 5.62179 5.64339 5.72772 5.83006 5.88875 6.00701 6.02234 6.04006 6.15541 6.20674 6.30510 6.40898 6.43741 6.50584 6.54236 6.63797 6.75519 6.81955 7.08462 7.12597 7.45277 7.47970 7.58359 7.96543 8.22389 8.43856 8.93273 9.11009 9.59662 11.06343 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.004632 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.511561 B = 6043.691631 C = 6922.412698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.168 4.168 3 C 0.154 3.846 4 C -0.188 4.188 5 C -0.154 4.154 6 N -0.579 5.579 7 C 0.240 3.760 8 C -0.511 4.511 9 H 0.060 0.940 10 C 0.061 3.939 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.281 1.281 14 H -0.286 1.286 15 H -0.275 1.275 16 C 0.551 3.449 17 O -0.532 6.532 18 C -0.123 4.123 19 C -0.168 4.168 20 C -0.134 4.134 21 C -0.089 4.089 22 C -0.105 4.105 23 C 0.089 3.911 24 O -0.318 6.318 25 C 0.026 3.974 26 C -0.137 4.137 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.072 0.928 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.032 0.968 40 H 0.262 0.738 41 H 0.232 0.768 42 H 0.129 0.871 43 H 0.066 0.934 44 H 0.064 0.936 45 H 0.068 0.932 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.096 0.904 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 -11.714 3.875 18.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.205 4.205 3 C 0.068 3.932 4 C -0.244 4.244 5 C -0.211 4.211 6 N -0.310 5.310 7 C 0.121 3.879 8 C -0.550 4.550 9 H 0.078 0.922 10 C -0.140 4.140 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.212 1.212 15 H -0.200 1.200 16 C 0.338 3.662 17 O -0.410 6.410 18 C -0.126 4.126 19 C -0.184 4.184 20 C -0.152 4.152 21 C -0.090 4.090 22 C -0.162 4.162 23 C 0.044 3.956 24 O -0.233 6.233 25 C -0.069 4.069 26 C -0.156 4.156 27 H 0.094 0.906 28 H 0.059 0.941 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.247 0.753 42 H 0.147 0.853 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.115 0.885 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.846 -11.330 3.317 18.195 hybrid contribution -1.026 -0.140 -0.734 1.269 sum 12.820 -11.470 2.583 17.395 Atomic orbital electron populations 1.22062 0.93975 1.00632 1.04750 1.22929 0.98622 0.96002 1.02995 1.20684 0.93325 0.92737 0.86457 1.23470 0.95461 1.01443 1.04071 1.22244 1.03401 0.99876 0.95558 1.48194 1.36245 1.41446 1.05155 1.19457 0.83287 0.86452 0.98662 1.21403 0.95458 0.99422 1.38715 0.92218 1.24875 0.98730 0.94779 0.95661 1.69924 1.28284 1.08343 1.47106 0.86587 0.82930 0.78901 0.79601 1.20692 1.21216 1.19956 1.17970 0.80866 0.83344 0.83992 1.90724 1.65502 1.53125 1.31640 1.20056 0.99725 0.98576 0.94237 1.25212 0.97624 0.92842 1.02721 1.20732 0.98276 0.98975 0.97253 1.19381 1.00122 0.98144 0.91394 1.20625 0.97307 0.95483 1.02749 1.18571 0.94370 0.95624 0.86997 1.85997 1.62209 1.56724 1.18323 1.23038 1.02126 0.95630 0.86107 1.21346 0.97017 0.97696 0.99589 0.90633 0.94133 0.91301 0.88532 0.91002 0.92788 0.91030 0.88642 0.89303 0.92093 0.91810 0.93121 0.94979 0.92865 0.75322 0.85346 0.91492 0.91753 0.91312 0.92542 0.92609 0.88512 0.84523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.60 9.25 37.16 0.34 -2.25 16 2 C -0.17 -2.43 3.86 -26.73 -0.10 -2.54 16 3 C 0.15 2.45 0.70 -131.82 -0.09 2.36 16 4 C -0.19 -2.52 7.32 36.71 0.27 -2.25 16 5 C -0.15 -2.31 6.49 37.16 0.24 -2.07 16 6 N -0.58 -12.08 2.24 -192.41 -0.43 -12.51 16 7 C 0.24 6.02 4.73 -5.20 -0.02 5.99 16 8 C -0.51 -13.93 7.95 -34.44 -0.27 -14.21 16 9 H 0.06 1.66 6.21 -52.49 -0.33 1.33 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.90 -25.98 13.29 55.43 0.74 -25.24 16 12 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 13 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 16 C 0.55 12.15 6.85 -12.32 -0.08 12.06 16 17 O -0.53 -13.93 16.06 5.32 0.09 -13.84 16 18 C -0.12 -2.20 4.55 -104.99 -0.48 -2.68 16 19 C -0.17 -2.44 2.77 -39.62 -0.11 -2.55 16 20 C -0.13 -1.67 9.58 -39.66 -0.38 -2.05 16 21 C -0.09 -1.18 5.90 -104.39 -0.62 -1.80 16 22 C -0.10 -1.08 9.78 36.01 0.35 -0.72 16 23 C 0.09 1.33 6.65 -39.28 -0.26 1.07 16 24 O -0.32 -4.32 9.52 -19.45 -0.19 -4.51 16 25 C 0.03 0.29 9.81 101.05 0.99 1.28 16 26 C -0.14 -2.33 8.58 -39.02 -0.33 -2.66 16 27 H 0.07 1.51 5.76 -51.93 -0.30 1.21 16 28 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 1.17 5.31 -51.93 -0.28 0.90 16 30 H 0.10 1.49 4.38 -72.28 -0.32 1.18 16 31 H 0.07 0.80 7.91 -51.93 -0.41 0.39 16 32 H 0.05 0.69 7.79 -51.93 -0.40 0.28 16 33 H 0.07 0.75 6.59 -51.93 -0.34 0.40 16 34 H 0.10 1.46 3.70 -81.42 -0.30 1.16 16 35 H 0.09 1.54 4.75 -51.93 -0.25 1.29 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.98 7.76 -51.93 -0.40 0.58 16 38 H 0.05 1.24 5.11 -51.93 -0.27 0.98 16 39 H 0.03 0.93 7.82 -51.93 -0.41 0.52 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.23 3.08 0.29 -229.26 -0.07 3.01 16 42 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 45 H 0.07 0.72 7.52 -51.93 -0.39 0.33 16 46 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 47 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 49 H 0.14 2.37 5.88 -52.49 -0.31 2.06 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -32.44 361.35 -7.26 -39.69 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.23 Total: 5.65 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: -0.66 Total: -11.43 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.30 Total: -37.75 kcal Atomic # 8 Polarization: -18.25 SS G_CDS: -0.10 Total: -18.35 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.44 -7.26 -39.69 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187529815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.803 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds