Wall clock time and date at job start Tue Mar 31 2020 12:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53009 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46829 * 173.28484 * 3 2 1 5 5 C 1.53001 * 109.46704 * 53.28374 * 3 2 1 6 6 N 1.46493 * 109.47284 * 293.28552 * 3 2 1 7 7 C 1.46496 * 120.00185 * 106.74149 * 6 3 2 8 8 C 1.50701 * 109.47300 * 254.48920 * 7 6 3 9 9 H 1.07994 * 120.00215 * 358.07392 * 8 7 6 10 10 C 1.37880 * 119.99810 * 178.07644 * 8 7 6 11 11 N 1.31520 * 120.00015 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 120.00029 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46999 * 89.99902 * 12 10 8 14 14 H 1.48493 * 109.47177 * 210.00187 * 12 10 8 15 15 H 1.48503 * 109.46821 * 329.99997 * 12 10 8 16 16 C 1.34780 * 119.99973 * 286.74574 * 6 3 2 17 17 O 1.21552 * 120.00368 * 187.04971 * 16 6 3 18 18 C 1.47860 * 120.00159 * 7.04725 * 16 6 3 19 19 C 1.39603 * 120.11423 * 2.05096 * 18 16 6 20 20 C 1.37966 * 119.96721 * 180.23020 * 19 18 16 21 21 C 1.38291 * 120.20240 * 359.52152 * 20 19 18 22 22 C 1.50701 * 119.87851 * 180.23318 * 21 20 19 23 23 C 1.38807 * 120.24078 * 0.45616 * 21 20 19 24 24 O 1.35907 * 119.98721 * 179.77475 * 23 21 20 25 25 C 1.42909 * 117.00087 * 180.02562 * 24 23 21 26 26 C 1.38496 * 120.02941 * 359.79587 * 23 21 20 27 27 H 1.09000 * 109.47284 * 81.43633 * 1 2 3 28 28 H 1.08998 * 109.47129 * 201.43530 * 1 2 3 29 29 H 1.08998 * 109.47489 * 321.43518 * 1 2 3 30 30 H 1.09002 * 109.47275 * 240.00760 * 2 1 3 31 31 H 1.08992 * 109.47452 * 120.00100 * 2 1 3 32 32 H 1.08999 * 109.47162 * 211.32092 * 4 3 2 33 33 H 1.09002 * 109.47136 * 331.31386 * 4 3 2 34 34 H 1.08994 * 109.47281 * 91.31675 * 4 3 2 35 35 H 1.08995 * 109.47550 * 299.51522 * 5 3 2 36 36 H 1.08997 * 109.46900 * 59.51993 * 5 3 2 37 37 H 1.09000 * 109.46527 * 179.51698 * 5 3 2 38 38 H 1.08994 * 109.46911 * 14.49304 * 7 6 3 39 39 H 1.09007 * 109.46667 * 134.49088 * 7 6 3 40 40 H 0.97000 * 119.99936 * 180.02562 * 11 10 8 41 41 H 1.07997 * 120.02124 * 359.95153 * 19 18 16 42 42 H 1.07993 * 119.90044 * 179.74167 * 20 19 18 43 43 H 1.08997 * 109.47314 * 270.22243 * 22 21 20 44 44 H 1.09003 * 109.47408 * 30.22721 * 22 21 20 45 45 H 1.08998 * 109.46952 * 150.22549 * 22 21 20 46 46 H 1.09001 * 109.46337 * 299.99514 * 25 24 23 47 47 H 1.08994 * 109.47225 * 59.99779 * 25 24 23 48 48 H 1.09003 * 109.46956 * 180.02562 * 25 24 23 49 49 H 1.07996 * 120.10421 * 180.02562 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5606 1.4459 0.1687 5 6 1.3968 2.2108 1.1564 6 7 1.6879 2.0850 -1.2686 7 6 0.6200 3.0869 -1.3108 8 6 -0.6081 2.4858 -1.9445 9 1 -0.5848 1.4700 -2.3102 10 6 -1.7614 3.2329 -2.0573 11 7 -1.7896 4.4703 -1.6124 12 14 -3.2835 2.4881 -2.8434 13 1 -4.1082 1.8295 -1.7988 14 1 -4.0769 3.5590 -3.4982 15 1 -2.8754 1.4837 -3.8582 16 6 2.3465 1.7542 -2.3971 17 8 2.1455 2.3751 -3.4225 18 6 3.3138 0.6358 -2.3877 19 6 3.5151 -0.1064 -1.2226 20 6 4.4219 -1.1462 -1.2160 21 6 5.1257 -1.4628 -2.3635 22 6 6.1105 -2.6034 -2.3495 23 6 4.9319 -0.7308 -3.5268 24 8 5.6298 -1.0434 -4.6504 25 6 5.3807 -0.2481 -5.8112 26 6 4.0279 0.3184 -3.5431 27 1 -0.3634 0.1530 -1.0162 28 1 -0.3633 -0.9566 0.3756 29 1 -0.3634 0.8035 0.6406 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 3.8647 2.3447 0.7051 33 1 3.8654 0.5650 0.7338 34 1 4.0350 1.4302 -0.8125 35 1 0.3140 2.2158 1.0316 36 1 1.6517 1.7278 2.0996 37 1 1.7666 3.2361 1.1615 38 1 0.3846 3.4099 -0.2968 39 1 0.9493 3.9443 -1.8981 40 1 -2.6011 4.9957 -1.6915 41 1 2.9647 0.1361 -0.3256 42 1 4.5798 -1.7170 -0.3129 43 1 7.0940 -2.2309 -2.0630 44 1 5.7841 -3.3565 -1.6323 45 1 6.1658 -3.0479 -3.3432 46 1 4.3294 -0.3282 -6.0877 47 1 5.6218 0.7930 -5.5969 48 1 6.0006 -0.6030 -6.6346 49 1 3.8758 0.8884 -4.4476 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187529815.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:25 Heat of formation + Delta-G solvation = 82.833143 kcal Electronic energy + Delta-G solvation = -29244.723258 eV Core-core repulsion = 25564.083974 eV Total energy + Delta-G solvation = -3680.639284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.50933 -40.68727 -39.11500 -38.04730 -35.52669 -34.01211 -33.62800 -32.07591 -31.00604 -29.87829 -28.70513 -28.10003 -27.29823 -25.01756 -24.90519 -23.11814 -22.43446 -22.24763 -19.88471 -18.78715 -17.96642 -17.74054 -17.24359 -16.81422 -16.78853 -16.64612 -16.32537 -15.97508 -15.82521 -15.27246 -15.07331 -14.47619 -14.44771 -14.34647 -14.22589 -14.03366 -13.71185 -13.41332 -13.17898 -13.00574 -12.97287 -12.83319 -12.72752 -12.65921 -12.49682 -12.42065 -12.20497 -12.13331 -11.96366 -11.90751 -11.56570 -11.40395 -11.27081 -10.69063 -10.55680 -10.28527 -9.82950 -9.39783 -8.71047 -8.18770 -6.27663 -0.12752 0.48221 1.32549 1.35686 1.45173 1.96435 2.21453 2.36773 2.42983 2.85927 3.11325 3.49407 3.54165 3.69857 3.84176 3.90307 4.02414 4.21740 4.27039 4.28115 4.37472 4.44007 4.57586 4.60968 4.66411 4.68842 4.71887 4.78186 4.80874 4.88092 4.92057 4.95133 5.02016 5.11500 5.16768 5.20491 5.26135 5.29208 5.36192 5.38100 5.39265 5.42824 5.53374 5.69426 5.77472 5.81416 5.92985 6.12462 6.37136 6.71567 6.82496 7.30819 7.47744 8.88638 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015095 B = 0.004632 C = 0.004044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.511561 B = 6043.691631 C = 6922.412698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.164 4.164 3 C 0.140 3.860 4 C -0.187 4.187 5 C -0.151 4.151 6 N -0.580 5.580 7 C 0.256 3.744 8 C -0.514 4.514 9 H 0.048 0.952 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.952 3.048 13 H -0.261 1.261 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.539 3.461 17 O -0.599 6.599 18 C -0.153 4.153 19 C -0.154 4.154 20 C -0.122 4.122 21 C -0.082 4.082 22 C -0.104 4.104 23 C 0.077 3.923 24 O -0.321 6.321 25 C 0.023 3.977 26 C -0.157 4.157 27 H 0.028 0.972 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.089 0.911 31 H 0.130 0.870 32 H 0.061 0.939 33 H 0.121 0.879 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.050 0.950 38 H 0.056 0.944 39 H -0.022 1.022 40 H 0.264 0.736 41 H 0.246 0.754 42 H 0.180 0.820 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.062 0.938 46 H 0.045 0.955 47 H 0.049 0.951 48 H 0.130 0.870 49 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.742 -15.631 6.833 23.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.201 4.201 3 C 0.056 3.944 4 C -0.242 4.242 5 C -0.208 4.208 6 N -0.310 5.310 7 C 0.136 3.864 8 C -0.553 4.553 9 H 0.066 0.934 10 C -0.187 4.187 11 N -0.568 5.568 12 Si 0.778 3.222 13 H -0.186 1.186 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.329 3.671 17 O -0.482 6.482 18 C -0.156 4.156 19 C -0.169 4.169 20 C -0.139 4.139 21 C -0.083 4.083 22 C -0.160 4.160 23 C 0.033 3.967 24 O -0.235 6.235 25 C -0.072 4.072 26 C -0.177 4.177 27 H 0.047 0.953 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.107 0.893 31 H 0.148 0.852 32 H 0.080 0.920 33 H 0.140 0.860 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.127 0.873 37 H 0.069 0.931 38 H 0.074 0.926 39 H -0.004 1.004 40 H 0.073 0.927 41 H 0.260 0.740 42 H 0.197 0.803 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.068 0.932 48 H 0.148 0.852 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 15.641 -15.276 6.322 22.759 hybrid contribution -1.495 1.057 -1.665 2.475 sum 14.146 -14.220 4.657 20.591 Atomic orbital electron populations 1.21996 0.95847 1.01805 1.01694 1.22956 0.96938 0.94994 1.05201 1.21229 0.95629 0.93600 0.83923 1.23436 0.92729 1.04262 1.03799 1.22226 1.01378 0.99795 0.97426 1.48189 1.34802 1.40661 1.07308 1.18948 0.83933 0.86049 0.97491 1.21554 0.96404 0.98880 1.38420 0.93414 1.25650 1.01657 0.95198 0.96224 1.70030 1.29136 1.09422 1.48250 0.85640 0.79659 0.78001 0.78894 1.18580 1.20789 1.20757 1.18796 0.81184 0.83876 0.83225 1.90660 1.67936 1.55629 1.33969 1.19740 1.00538 0.98747 0.96556 1.25309 0.97706 0.92398 1.01475 1.21260 0.96196 0.97795 0.98658 1.19941 0.99762 0.97934 0.90614 1.20721 0.97089 0.94754 1.03443 1.18785 0.94175 0.95374 0.88391 1.85987 1.61959 1.57033 1.18520 1.23210 1.02279 0.95462 0.86270 1.21280 0.98527 0.98968 0.98885 0.95286 0.91279 0.92267 0.89282 0.85244 0.92038 0.86048 0.90594 0.92146 0.87295 0.93080 0.92608 1.00400 0.92664 0.74016 0.80286 0.89998 0.88921 0.91884 0.93619 0.93214 0.85162 0.86847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.96 9.25 71.98 0.67 -4.29 16 2 C -0.16 -4.20 3.86 30.60 0.12 -4.08 16 3 C 0.14 4.25 0.70 3.61 0.00 4.25 16 4 C -0.19 -4.38 7.32 71.69 0.53 -3.85 16 5 C -0.15 -4.32 6.49 71.98 0.47 -3.85 16 6 N -0.58 -25.46 2.24 -880.92 -1.98 -27.44 16 7 C 0.26 13.86 4.73 85.63 0.41 14.26 16 8 C -0.51 -29.78 7.95 25.60 0.20 -29.58 16 9 H 0.05 2.84 6.21 -2.91 -0.02 2.82 16 10 C 0.01 0.64 5.46 84.65 0.46 1.10 16 11 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 12 Si 0.95 46.20 29.54 68.60 2.03 48.23 16 13 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 14 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 15 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 16 C 0.54 25.54 6.85 86.79 0.59 26.13 16 17 O -0.60 -34.74 16.06 -3.88 -0.06 -34.80 16 18 C -0.15 -5.62 4.55 -20.10 -0.09 -5.71 16 19 C -0.15 -3.99 2.77 22.25 0.06 -3.93 16 20 C -0.12 -2.38 9.58 22.22 0.21 -2.17 16 21 C -0.08 -1.85 5.90 -19.72 -0.12 -1.97 16 22 C -0.10 -1.61 9.78 71.24 0.70 -0.91 16 23 C 0.08 2.25 6.65 22.47 0.15 2.40 16 24 O -0.32 -8.49 9.52 -92.50 -0.88 -9.37 16 25 C 0.02 0.50 9.81 113.37 1.11 1.62 16 26 C -0.16 -5.60 8.58 22.63 0.19 -5.40 16 27 H 0.03 1.17 5.76 -2.39 -0.01 1.16 16 28 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.98 5.31 -2.39 -0.01 1.97 16 30 H 0.09 2.50 4.38 -21.51 -0.09 2.40 16 31 H 0.13 1.92 7.91 -2.39 -0.02 1.90 16 32 H 0.06 1.38 7.79 -2.39 -0.02 1.36 16 33 H 0.12 1.69 6.59 -2.39 -0.02 1.67 16 34 H 0.08 2.20 3.70 -30.09 -0.11 2.09 16 35 H 0.06 2.09 4.75 -2.39 -0.01 2.08 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.05 1.56 7.76 -2.39 -0.02 1.54 16 38 H 0.06 2.92 5.11 -2.39 -0.01 2.91 16 39 H -0.02 -1.40 7.82 -2.38 -0.02 -1.42 16 40 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 41 H 0.25 5.50 0.29 -168.95 -0.05 5.45 16 42 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 44 H 0.09 0.96 8.08 -2.39 -0.02 0.94 16 45 H 0.06 1.09 7.52 -2.39 -0.02 1.07 16 46 H 0.05 1.10 7.66 -2.39 -0.02 1.09 16 47 H 0.05 1.16 7.66 -2.39 -0.02 1.14 16 48 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.11 4.42 5.88 -2.91 -0.02 4.41 16 Total: -1.00 -80.56 361.35 5.80 -74.76 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.74 Total: 20.43 kcal Atomic # 6 Polarization: -21.64 SS G_CDS: 5.66 Total: -15.97 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.69 Total: -83.27 kcal Atomic # 8 Polarization: -43.23 SS G_CDS: -0.94 Total: -44.17 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -80.56 5.80 -74.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187529815.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.591 kcal (2) G-P(sol) polarization free energy of solvation -80.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds