Wall clock time and date at job start Tue Mar 31 2020 12:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 C 1.53009 * 109.46910 * 119.99903 * 2 1 3 5 5 C 1.52997 * 109.46800 * 300.00047 * 4 2 1 6 6 C 1.52996 * 109.46916 * 180.02562 * 4 2 1 7 7 C 1.52996 * 109.47130 * 59.99733 * 4 2 1 8 8 N 1.46500 * 109.47128 * 179.97438 * 7 4 2 9 9 C 1.34774 * 120.00119 * 180.02562 * 8 7 4 10 10 O 1.21282 * 120.00304 * 0.02562 * 9 8 7 11 11 C 1.50704 * 120.00135 * 180.02562 * 9 8 7 12 12 C 1.50699 * 109.47208 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96230 * 269.97915 * 12 11 9 14 14 C 1.38281 * 120.13505 * 180.02562 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96534 * 89.99715 * 12 11 9 27 27 H 1.08996 * 109.46859 * 60.00336 * 1 2 3 28 28 H 1.09001 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46987 * 300.00180 * 1 2 3 30 30 H 1.08993 * 109.47372 * 239.99536 * 2 1 3 31 31 H 1.09003 * 109.46975 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46960 * 299.99603 * 3 2 1 33 33 H 1.08998 * 109.47317 * 60.00022 * 3 2 1 34 34 H 1.09005 * 109.47104 * 180.02562 * 5 4 2 35 35 H 1.09001 * 109.47146 * 299.99985 * 5 4 2 36 36 H 1.08998 * 109.47660 * 60.00249 * 5 4 2 37 37 H 1.09002 * 109.47231 * 299.99239 * 6 4 2 38 38 H 1.09001 * 109.47460 * 59.99751 * 6 4 2 39 39 H 1.08998 * 109.47132 * 180.02562 * 6 4 2 40 40 H 1.09008 * 109.46644 * 60.00251 * 7 4 2 41 41 H 1.08998 * 109.47635 * 300.00447 * 7 4 2 42 42 H 0.97001 * 119.99420 * 0.02562 * 8 7 4 43 43 H 1.09002 * 109.46571 * 59.99894 * 11 9 8 44 44 H 1.08992 * 109.46782 * 300.00158 * 11 9 8 45 45 H 1.08001 * 119.93314 * 0.02562 * 13 12 11 46 46 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 47 47 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 48 48 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 49 49 H 1.07996 * 120.03547 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5299 0.0000 2.4985 6 6 3.5700 -0.7207 1.2497 7 6 1.5299 -2.1637 1.2494 8 7 2.0187 -2.8545 2.4453 9 6 1.6936 -4.1450 2.6583 10 8 0.9967 -4.7346 1.8598 11 6 2.1959 -4.8554 3.8888 12 6 1.6946 -6.2766 3.8882 13 6 0.4860 -6.5831 4.4871 14 6 0.0229 -7.8861 4.4891 15 6 0.7633 -8.8845 3.8869 16 6 1.9796 -8.5810 3.2898 17 8 2.7124 -9.5612 2.7023 18 6 2.2637 -10.8254 2.8377 19 1 1.3176 -11.0136 3.3232 20 6 3.0171 -11.8840 2.3535 21 7 4.1699 -11.6548 1.7624 22 14 2.3959 -13.6356 2.5416 23 1 1.5776 -14.0004 1.3573 24 1 3.5516 -14.5619 2.6491 25 1 1.5645 -13.7369 3.7679 26 6 2.4424 -7.2713 3.2900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 3.1301 1.4425 0.0005 32 1 1.6768 1.9563 -0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.8936 -0.5135 3.3886 35 1 1.8933 1.0277 2.4984 36 1 0.4399 0.0001 2.4985 37 1 3.9337 -1.2344 0.3598 38 1 3.9330 0.3071 1.2498 39 1 3.9333 -1.2349 2.1394 40 1 1.8933 -2.6776 0.3594 41 1 0.4399 -2.1637 1.2493 42 1 2.5764 -2.3830 3.0837 43 1 1.8321 -4.3418 4.7787 44 1 3.2858 -4.8549 3.8890 45 1 -0.0971 -5.8032 4.9542 46 1 -0.9208 -8.1223 4.9579 47 1 0.3986 -9.9011 3.8842 48 1 4.6970 -12.3954 1.4240 49 1 3.3863 -7.0314 2.8232 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187613020.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:13 Heat of formation + Delta-G solvation = -84.054621 kcal Electronic energy + Delta-G solvation = -26452.223228 eV Core-core repulsion = 22764.347148 eV Total energy + Delta-G solvation = -3687.876080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.25360 -40.59814 -39.50072 -38.13619 -35.33357 -34.34386 -33.48310 -31.98214 -30.88617 -29.36322 -28.55424 -27.85444 -27.26046 -26.27269 -23.53825 -23.19913 -22.50976 -21.42374 -19.59628 -19.18024 -18.73126 -18.01938 -16.98793 -16.85712 -16.62735 -16.22967 -16.08500 -15.96438 -15.51035 -15.34696 -15.07660 -15.02437 -14.69316 -14.36983 -14.30697 -13.99142 -13.74360 -13.60433 -13.22965 -12.98720 -12.94288 -12.78055 -12.71163 -12.66286 -12.46831 -12.38827 -12.22891 -12.19070 -12.10273 -11.99450 -11.37462 -11.28148 -11.22111 -11.20307 -10.90862 -10.78973 -10.03004 -9.63169 -8.97544 -8.47182 -6.15755 0.52633 0.76157 1.33504 1.43526 1.51722 1.70663 2.17484 2.27188 2.85748 3.18717 3.44623 3.67848 3.78379 3.81899 3.84582 4.10609 4.16110 4.23658 4.32256 4.34041 4.44072 4.45491 4.58789 4.63849 4.65466 4.72072 4.74179 4.76979 4.83791 4.90299 5.00317 5.02856 5.07642 5.08822 5.13054 5.13207 5.18866 5.22253 5.31198 5.31310 5.38766 5.51980 5.58780 5.64412 5.65490 5.73119 5.75882 6.02841 6.24102 6.60968 6.97271 7.34049 7.79186 8.76514 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.002243 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.850903 B =12481.631457 C =12953.515641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 C -0.146 4.146 4 C -0.062 4.062 5 C -0.145 4.145 6 C -0.146 4.146 7 C 0.128 3.872 8 N -0.713 5.713 9 C 0.512 3.488 10 O -0.582 6.582 11 C -0.091 4.091 12 C -0.025 4.025 13 C -0.180 4.180 14 C -0.074 4.074 15 C -0.247 4.247 16 C 0.111 3.889 17 O -0.235 6.235 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.923 5.923 22 Si 1.021 2.979 23 H -0.264 1.264 24 H -0.269 1.269 25 H -0.252 1.252 26 C -0.194 4.194 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.041 0.959 41 H 0.059 0.941 42 H 0.415 0.585 43 H 0.145 0.855 44 H 0.121 0.879 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.118 0.882 48 H 0.273 0.727 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.746 27.909 4.235 28.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 C -0.203 4.203 4 C -0.062 4.062 5 C -0.202 4.202 6 C -0.203 4.203 7 C 0.004 3.996 8 N -0.367 5.367 9 C 0.299 3.701 10 O -0.461 6.461 11 C -0.131 4.131 12 C -0.026 4.026 13 C -0.199 4.199 14 C -0.092 4.092 15 C -0.266 4.266 16 C 0.061 3.939 17 O -0.142 6.142 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.561 5.561 22 Si 0.840 3.160 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.176 1.176 26 C -0.213 4.213 27 H 0.077 0.923 28 H 0.062 0.938 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.076 0.924 37 H 0.064 0.936 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.254 0.746 43 H 0.162 0.838 44 H 0.139 0.861 45 H 0.165 0.835 46 H 0.163 0.837 47 H 0.135 0.865 48 H 0.081 0.919 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.865 27.418 3.442 28.058 hybrid contribution 0.202 -1.171 -0.317 1.230 sum -4.663 26.246 3.125 26.840 Atomic orbital electron populations 1.21984 0.95315 1.01383 1.02458 1.21066 0.95760 0.97011 0.96491 1.21912 1.01431 0.94599 1.02333 1.20737 0.96386 0.91974 0.97115 1.21996 1.01381 1.01006 0.95823 1.21969 0.93503 1.02954 1.01907 1.21453 0.98709 0.92432 0.87008 1.45891 1.53863 1.11091 1.25900 1.20943 0.79585 0.82052 0.87523 1.90753 1.39727 1.67087 1.48537 1.20710 1.03833 0.90919 0.97610 1.19204 0.94249 0.93683 0.95447 1.20979 0.96837 0.96698 1.05371 1.21136 0.98994 0.92511 0.96555 1.21292 0.96883 1.01069 1.07406 1.19885 0.91659 0.90003 0.92342 1.83935 1.48660 1.15536 1.66047 1.21830 1.06549 0.80014 1.40629 0.88250 1.26630 0.95430 1.04540 0.95633 1.70190 1.13633 1.34159 1.38124 0.84568 0.78094 0.73717 0.79671 1.18947 1.19323 1.17556 1.20225 1.02439 0.90662 1.07964 0.92329 0.93781 0.91456 0.92118 0.91913 0.92617 0.91487 0.91901 0.90654 0.92422 0.93592 0.90470 0.91959 0.94055 0.92307 0.74638 0.83762 0.86126 0.83473 0.83680 0.86465 0.91850 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.49 71.98 0.61 -1.38 16 2 C -0.08 -1.03 2.28 -10.79 -0.02 -1.05 16 3 C -0.15 -1.30 8.49 71.98 0.61 -0.69 16 4 C -0.06 -0.75 0.33 -52.18 -0.02 -0.77 16 5 C -0.15 -1.31 7.59 71.98 0.55 -0.76 16 6 C -0.15 -1.62 7.95 71.98 0.57 -1.04 16 7 C 0.13 2.49 4.21 86.38 0.36 2.85 16 8 N -0.71 -13.39 4.96 -463.06 -2.30 -15.68 16 9 C 0.51 14.20 7.82 87.66 0.69 14.89 16 10 O -0.58 -23.29 16.03 -3.04 -0.05 -23.34 16 11 C -0.09 -2.17 5.83 29.10 0.17 -2.00 16 12 C -0.03 -0.90 4.37 -19.88 -0.09 -0.99 16 13 C -0.18 -6.08 9.70 22.30 0.22 -5.86 16 14 C -0.07 -2.77 10.04 22.25 0.22 -2.54 16 15 C -0.25 -11.68 9.17 22.39 0.21 -11.47 16 16 C 0.11 5.98 6.65 22.58 0.15 6.13 16 17 O -0.23 -15.01 9.76 -22.74 -0.22 -15.23 16 18 C -0.41 -25.37 9.49 67.92 0.64 -24.72 16 19 H 0.10 5.62 5.21 -2.91 -0.02 5.60 16 20 C -0.03 -1.50 5.49 84.83 0.47 -1.04 16 21 N -0.92 -58.70 13.67 21.61 0.30 -58.40 16 22 Si 1.02 44.57 29.55 68.60 2.03 46.59 16 23 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 26 C -0.19 -8.97 9.65 22.39 0.22 -8.76 16 27 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.04 0.71 6.43 -2.39 -0.02 0.69 16 29 H 0.07 0.75 6.43 -2.39 -0.02 0.73 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.51 6.43 -2.39 -0.02 0.50 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.07 0.49 6.43 -2.39 -0.02 0.48 16 34 H 0.06 0.47 6.86 -2.38 -0.02 0.46 16 35 H 0.07 0.51 6.43 -2.39 -0.02 0.49 16 36 H 0.06 0.59 6.43 -2.39 -0.02 0.58 16 37 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.08 0.64 6.43 -2.39 -0.02 0.63 16 39 H 0.06 0.61 6.86 -2.39 -0.02 0.59 16 40 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.06 1.30 6.43 -2.39 -0.02 1.28 16 42 H 0.42 4.76 6.16 -92.71 -0.57 4.19 16 43 H 0.14 2.13 8.09 -2.39 -0.02 2.11 16 44 H 0.12 2.40 8.08 -2.39 -0.02 2.38 16 45 H 0.15 3.72 8.06 -2.91 -0.02 3.69 16 46 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 47 H 0.12 5.58 5.64 -2.91 -0.02 5.57 16 48 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 49 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 Total: -1.00 -83.52 384.36 5.69 -77.83 By element: Atomic # 1 Polarization: 27.07 SS G_CDS: 0.39 Total: 27.45 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 5.55 Total: -39.21 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -2.00 Total: -74.08 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.27 Total: -38.58 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Total: -83.52 5.69 -77.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187613020.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.226 kcal (2) G-P(sol) polarization free energy of solvation -83.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds