Wall clock time and date at job start Tue Mar 31 2020 12:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46830 * 2 1 4 4 C 1.53008 * 109.46754 * 188.57591 * 3 2 1 5 5 C 1.53001 * 109.47242 * 68.57566 * 3 2 1 6 6 N 1.46503 * 109.47340 * 308.57288 * 3 2 1 7 7 C 1.46499 * 120.00054 * 129.44339 * 6 3 2 8 8 C 1.50697 * 109.47048 * 266.06310 * 7 6 3 9 9 H 1.08004 * 120.00283 * 4.45780 * 8 7 6 10 10 C 1.37885 * 119.99814 * 184.45329 * 8 7 6 11 11 N 1.31513 * 119.99675 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99947 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47532 * 89.99555 * 12 10 8 14 14 H 1.48502 * 109.47070 * 209.99754 * 12 10 8 15 15 H 1.48500 * 109.47278 * 329.99493 * 12 10 8 16 16 C 1.34776 * 119.99970 * 309.44445 * 6 3 2 17 17 O 1.21284 * 119.99978 * 186.65324 * 16 6 3 18 18 C 1.50698 * 120.00086 * 6.66141 * 16 6 3 19 19 O 1.42903 * 109.47062 * 190.41169 * 18 16 6 20 20 C 1.42903 * 113.99837 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.46767 * 179.97438 * 20 19 18 22 22 C 1.38242 * 119.99722 * 90.00508 * 21 20 19 23 23 C 1.38230 * 119.99957 * 179.97438 * 22 21 20 24 24 C 1.38237 * 120.00341 * 359.97438 * 23 22 21 25 25 C 1.38240 * 119.99446 * 0.27335 * 24 23 22 26 26 C 1.38233 * 120.00215 * 269.98056 * 21 20 19 27 27 H 1.08996 * 109.47478 * 65.62900 * 1 2 3 28 28 H 1.08992 * 109.47130 * 185.63493 * 1 2 3 29 29 H 1.09001 * 109.46896 * 305.62843 * 1 2 3 30 30 H 1.09001 * 109.46436 * 240.00691 * 2 1 3 31 31 H 1.08992 * 109.47551 * 120.00015 * 2 1 3 32 32 H 1.08997 * 109.46872 * 191.17099 * 4 3 2 33 33 H 1.08995 * 109.46869 * 311.17263 * 4 3 2 34 34 H 1.09004 * 109.46872 * 71.17379 * 4 3 2 35 35 H 1.08991 * 109.46842 * 296.88716 * 5 3 2 36 36 H 1.08996 * 109.46714 * 56.89143 * 5 3 2 37 37 H 1.08999 * 109.46980 * 176.88518 * 5 3 2 38 38 H 1.09009 * 109.46998 * 26.06105 * 7 6 3 39 39 H 1.09002 * 109.47167 * 146.05950 * 7 6 3 40 40 H 0.97006 * 119.99601 * 180.02562 * 11 10 8 41 41 H 1.08998 * 109.47270 * 70.41289 * 18 16 6 42 42 H 1.08997 * 109.47101 * 310.40831 * 18 16 6 43 43 H 1.09002 * 109.47032 * 60.00656 * 20 19 18 44 44 H 1.08997 * 109.47519 * 300.00348 * 20 19 18 45 45 H 1.07999 * 119.99886 * 359.97438 * 22 21 20 46 46 H 1.07999 * 120.00358 * 179.97438 * 23 22 21 47 47 H 1.07993 * 120.00275 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.99669 * 179.72216 * 25 24 23 49 49 H 1.07993 * 120.00280 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5548 1.4479 -0.2151 5 6 1.7132 2.0990 1.3428 6 7 1.3908 2.1901 -1.0799 7 6 0.7552 3.4797 -0.7988 8 6 -0.7105 3.2673 -0.5201 9 1 -1.1126 2.2658 -0.4782 10 6 -1.5381 4.3515 -0.3184 11 7 -2.8172 4.1661 -0.0757 12 14 -0.8426 6.0837 -0.3914 13 1 -0.9272 6.5929 -1.7838 14 1 -1.6249 6.9694 0.5079 15 1 0.5770 6.0659 0.0438 16 6 1.3782 1.6912 -2.3318 17 8 0.9493 2.3613 -3.2473 18 6 1.8970 0.3009 -2.5942 19 8 2.0062 0.0913 -4.0036 20 6 2.4925 -1.2035 -4.3627 21 6 2.5664 -1.3137 -5.8638 22 6 3.7231 -0.9496 -6.5275 23 6 3.7912 -1.0511 -7.9044 24 6 2.7027 -1.5174 -8.6177 25 6 1.5443 -1.8767 -7.9545 26 6 1.4778 -1.7795 -6.5772 27 1 -0.3634 0.4240 -0.9360 28 1 -0.3633 -1.0226 0.1009 29 1 -0.3633 0.5987 0.8353 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.9460 2.4462 -0.0192 33 1 4.0209 0.7351 0.4651 34 1 3.7766 1.1663 -1.2445 35 1 0.6318 2.1450 1.4711 36 1 2.1503 1.5116 2.1502 37 1 2.1248 3.1081 1.3636 38 1 1.2281 3.9360 0.0710 39 1 0.8696 4.1368 -1.6610 40 1 -3.3996 4.9290 0.0659 41 1 1.2081 -0.4299 -2.1706 42 1 2.8777 0.1859 -2.1328 43 1 1.8163 -1.9658 -3.9757 44 1 3.4856 -1.3494 -3.9379 45 1 4.5737 -0.5857 -5.9702 46 1 4.6947 -0.7663 -8.4229 47 1 2.7560 -1.5971 -9.6934 48 1 0.6923 -2.2367 -8.5122 49 1 0.5741 -2.0640 -6.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189900620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:22 Heat of formation + Delta-G solvation = -30.537512 kcal Electronic energy + Delta-G solvation = -27941.736051 eV Core-core repulsion = 24256.180646 eV Total energy + Delta-G solvation = -3685.555404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.20054 -39.36566 -37.41081 -36.57330 -33.25255 -32.12072 -31.74946 -31.00298 -30.39367 -29.47304 -27.01641 -26.56945 -25.42206 -23.17327 -22.68727 -22.18552 -21.42483 -20.65292 -18.11806 -17.01810 -16.90427 -16.89959 -16.26810 -15.89368 -15.24263 -15.13774 -14.91736 -14.63289 -14.07526 -13.85680 -13.85124 -13.54439 -13.40254 -13.03454 -12.77832 -12.67820 -12.48488 -12.33518 -12.09971 -11.97346 -11.70205 -11.39081 -11.33428 -11.25577 -11.10338 -11.03760 -10.97099 -10.73045 -10.42705 -10.38671 -10.10522 -9.90021 -9.53024 -9.38839 -9.02607 -9.01232 -8.82832 -8.53599 -7.64397 -6.04796 -4.02280 1.15853 1.30997 3.25163 3.32868 3.35349 3.38493 3.41687 3.75466 4.26749 4.43877 4.69941 4.72872 4.88529 4.91152 4.97626 5.05522 5.10068 5.14815 5.20693 5.26522 5.28251 5.33694 5.43486 5.47250 5.54139 5.59578 5.76230 5.82084 5.85553 5.93431 5.93624 6.03460 6.11350 6.19846 6.24972 6.33095 6.38821 6.45074 6.46501 6.50265 6.74625 6.80746 6.87583 6.97371 7.01257 7.16655 7.45162 7.65976 8.30006 8.51902 8.99023 9.05405 9.56850 11.07935 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.003430 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.158423 B = 8161.688414 C = 8969.820137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.156 4.156 3 C 0.164 3.836 4 C -0.166 4.166 5 C -0.151 4.151 6 N -0.582 5.582 7 C 0.214 3.786 8 C -0.526 4.526 9 H 0.084 0.916 10 C 0.073 3.927 11 N -0.897 5.897 12 Si 0.872 3.128 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.267 1.267 16 C 0.515 3.485 17 O -0.519 6.519 18 C 0.028 3.972 19 O -0.359 6.359 20 C 0.099 3.901 21 C -0.085 4.085 22 C -0.098 4.098 23 C -0.126 4.126 24 C -0.117 4.117 25 C -0.124 4.124 26 C -0.096 4.096 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.263 0.737 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.122 0.878 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.838 -14.422 -5.561 21.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.194 4.194 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.208 4.208 6 N -0.316 5.316 7 C 0.094 3.906 8 C -0.565 4.565 9 H 0.102 0.898 10 C -0.129 4.129 11 N -0.536 5.536 12 Si 0.699 3.301 13 H -0.200 1.200 14 H -0.213 1.213 15 H -0.192 1.192 16 C 0.301 3.699 17 O -0.394 6.394 18 C -0.051 4.051 19 O -0.277 6.277 20 C 0.023 3.977 21 C -0.086 4.086 22 C -0.116 4.116 23 C -0.144 4.144 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.114 4.114 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.108 0.892 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.140 0.860 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 14.377 -13.792 -6.144 20.848 hybrid contribution 0.234 0.790 0.242 0.859 sum 14.611 -13.002 -5.902 20.429 Atomic orbital electron populations 1.21885 0.94148 1.00499 1.04424 1.22582 0.98135 0.95930 1.02706 1.20401 0.91058 0.91692 0.89034 1.22451 0.95766 1.02564 1.01671 1.22127 1.04900 1.00027 0.93754 1.47982 1.55197 1.22372 1.06037 1.19715 0.93893 0.80525 0.96471 1.21460 0.90957 0.95774 1.48283 0.89758 1.24835 0.94630 0.98738 0.94661 1.69890 1.03921 1.30947 1.48859 0.86922 0.79380 0.85287 0.78527 1.20015 1.21262 1.19192 1.19774 0.79714 0.87208 0.83222 1.90695 1.45731 1.59993 1.43016 1.23418 1.01404 0.97501 0.82782 1.88115 1.86451 1.31559 1.21602 1.21337 0.98629 0.86206 0.91560 1.19598 0.94483 1.00039 0.94435 1.21068 0.97759 0.98269 0.94528 1.21127 0.98861 1.00275 0.94107 1.21181 0.93525 0.99005 0.99817 1.21154 0.98076 1.00606 0.94382 1.21114 0.97680 0.98369 0.94237 0.91679 0.93826 0.91064 0.90648 0.91218 0.91985 0.91695 0.92418 0.89249 0.92594 0.92112 0.94618 0.94996 0.92686 0.89240 0.90402 0.92368 0.92539 0.85967 0.86012 0.86132 0.85918 0.85776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.02 37.16 0.30 -2.18 16 2 C -0.16 -2.08 4.27 -26.73 -0.11 -2.19 16 3 C 0.16 2.52 0.71 -131.81 -0.09 2.42 16 4 C -0.17 -2.07 8.45 37.16 0.31 -1.76 16 5 C -0.15 -2.34 7.06 37.16 0.26 -2.07 16 6 N -0.58 -11.76 1.71 -160.17 -0.27 -12.04 16 7 C 0.21 5.14 3.60 -5.20 -0.02 5.12 16 8 C -0.53 -14.50 9.05 -34.44 -0.31 -14.82 16 9 H 0.08 2.47 5.83 -52.48 -0.31 2.16 16 10 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 11 N -0.90 -27.28 13.96 55.43 0.77 -26.50 16 12 Si 0.87 21.67 27.38 -169.99 -4.65 17.02 16 13 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.27 -6.25 6.67 56.52 0.38 -5.87 16 16 C 0.52 10.99 6.14 -10.99 -0.07 10.93 16 17 O -0.52 -13.79 16.14 -14.14 -0.23 -14.02 16 18 C 0.03 0.44 3.97 36.00 0.14 0.59 16 19 O -0.36 -6.15 9.88 -54.92 -0.54 -6.69 16 20 C 0.10 1.22 6.06 36.01 0.22 1.44 16 21 C -0.09 -1.08 5.51 -104.62 -0.58 -1.65 16 22 C -0.10 -1.13 9.70 -39.58 -0.38 -1.51 16 23 C -0.13 -1.29 10.05 -39.58 -0.40 -1.69 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 26 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 27 H 0.06 1.29 5.40 -51.93 -0.28 1.00 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.29 6.29 -51.93 -0.33 0.96 16 30 H 0.08 0.90 3.65 -51.93 -0.19 0.71 16 31 H 0.07 0.77 8.13 -51.93 -0.42 0.34 16 32 H 0.06 0.79 8.09 -51.93 -0.42 0.37 16 33 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 34 H 0.06 0.71 5.35 -51.93 -0.28 0.43 16 35 H 0.09 1.65 5.70 -51.93 -0.30 1.35 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.96 6.73 -51.93 -0.35 0.61 16 38 H 0.04 0.81 5.18 -51.92 -0.27 0.54 16 39 H 0.03 0.85 6.64 -51.93 -0.34 0.50 16 40 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 41 H 0.09 1.31 5.20 -51.93 -0.27 1.04 16 42 H 0.08 1.01 4.44 -51.93 -0.23 0.78 16 43 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 46 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 373.60 15.07 5.63 5.63 Total: -1.00 -34.81 373.60 -8.66 -43.47 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.36 Total: 3.31 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.00 Total: -10.18 kcal Atomic # 7 Polarization: -39.04 SS G_CDS: 0.50 Total: -38.54 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.77 Total: -20.71 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.65 Total: 17.02 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.81 -8.66 -43.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.937 kcal (2) G-P(sol) polarization free energy of solvation -34.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds