Wall clock time and date at job start Tue Mar 31 2020 12:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46830 * 2 1 4 4 C 1.53008 * 109.46754 * 188.57591 * 3 2 1 5 5 C 1.53001 * 109.47242 * 68.57566 * 3 2 1 6 6 N 1.46503 * 109.47340 * 308.57288 * 3 2 1 7 7 C 1.46499 * 120.00054 * 129.44339 * 6 3 2 8 8 C 1.50697 * 109.47048 * 266.06310 * 7 6 3 9 9 H 1.08004 * 120.00283 * 4.45780 * 8 7 6 10 10 C 1.37885 * 119.99814 * 184.45329 * 8 7 6 11 11 N 1.31513 * 119.99675 * 179.97438 * 10 8 7 12 12 Si 1.86793 * 119.99947 * 0.02562 * 10 8 7 13 13 H 1.48501 * 109.47532 * 89.99555 * 12 10 8 14 14 H 1.48502 * 109.47070 * 209.99754 * 12 10 8 15 15 H 1.48500 * 109.47278 * 329.99493 * 12 10 8 16 16 C 1.34776 * 119.99970 * 309.44445 * 6 3 2 17 17 O 1.21284 * 119.99978 * 186.65324 * 16 6 3 18 18 C 1.50698 * 120.00086 * 6.66141 * 16 6 3 19 19 O 1.42903 * 109.47062 * 190.41169 * 18 16 6 20 20 C 1.42903 * 113.99837 * 179.97438 * 19 18 16 21 21 C 1.50701 * 109.46767 * 179.97438 * 20 19 18 22 22 C 1.38242 * 119.99722 * 90.00508 * 21 20 19 23 23 C 1.38230 * 119.99957 * 179.97438 * 22 21 20 24 24 C 1.38237 * 120.00341 * 359.97438 * 23 22 21 25 25 C 1.38240 * 119.99446 * 0.27335 * 24 23 22 26 26 C 1.38233 * 120.00215 * 269.98056 * 21 20 19 27 27 H 1.08996 * 109.47478 * 65.62900 * 1 2 3 28 28 H 1.08992 * 109.47130 * 185.63493 * 1 2 3 29 29 H 1.09001 * 109.46896 * 305.62843 * 1 2 3 30 30 H 1.09001 * 109.46436 * 240.00691 * 2 1 3 31 31 H 1.08992 * 109.47551 * 120.00015 * 2 1 3 32 32 H 1.08997 * 109.46872 * 191.17099 * 4 3 2 33 33 H 1.08995 * 109.46869 * 311.17263 * 4 3 2 34 34 H 1.09004 * 109.46872 * 71.17379 * 4 3 2 35 35 H 1.08991 * 109.46842 * 296.88716 * 5 3 2 36 36 H 1.08996 * 109.46714 * 56.89143 * 5 3 2 37 37 H 1.08999 * 109.46980 * 176.88518 * 5 3 2 38 38 H 1.09009 * 109.46998 * 26.06105 * 7 6 3 39 39 H 1.09002 * 109.47167 * 146.05950 * 7 6 3 40 40 H 0.97006 * 119.99601 * 180.02562 * 11 10 8 41 41 H 1.08998 * 109.47270 * 70.41289 * 18 16 6 42 42 H 1.08997 * 109.47101 * 310.40831 * 18 16 6 43 43 H 1.09002 * 109.47032 * 60.00656 * 20 19 18 44 44 H 1.08997 * 109.47519 * 300.00348 * 20 19 18 45 45 H 1.07999 * 119.99886 * 359.97438 * 22 21 20 46 46 H 1.07999 * 120.00358 * 179.97438 * 23 22 21 47 47 H 1.07993 * 120.00275 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.99669 * 179.72216 * 25 24 23 49 49 H 1.07993 * 120.00280 * 0.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5548 1.4479 -0.2151 5 6 1.7132 2.0990 1.3428 6 7 1.3908 2.1901 -1.0799 7 6 0.7552 3.4797 -0.7988 8 6 -0.7105 3.2673 -0.5201 9 1 -1.1126 2.2658 -0.4782 10 6 -1.5381 4.3515 -0.3184 11 7 -2.8172 4.1661 -0.0757 12 14 -0.8426 6.0837 -0.3914 13 1 -0.9272 6.5929 -1.7838 14 1 -1.6249 6.9694 0.5079 15 1 0.5770 6.0659 0.0438 16 6 1.3782 1.6912 -2.3318 17 8 0.9493 2.3613 -3.2473 18 6 1.8970 0.3009 -2.5942 19 8 2.0062 0.0913 -4.0036 20 6 2.4925 -1.2035 -4.3627 21 6 2.5664 -1.3137 -5.8638 22 6 3.7231 -0.9496 -6.5275 23 6 3.7912 -1.0511 -7.9044 24 6 2.7027 -1.5174 -8.6177 25 6 1.5443 -1.8767 -7.9545 26 6 1.4778 -1.7795 -6.5772 27 1 -0.3634 0.4240 -0.9360 28 1 -0.3633 -1.0226 0.1009 29 1 -0.3633 0.5987 0.8353 30 1 1.8932 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.9460 2.4462 -0.0192 33 1 4.0209 0.7351 0.4651 34 1 3.7766 1.1663 -1.2445 35 1 0.6318 2.1450 1.4711 36 1 2.1503 1.5116 2.1502 37 1 2.1248 3.1081 1.3636 38 1 1.2281 3.9360 0.0710 39 1 0.8696 4.1368 -1.6610 40 1 -3.3996 4.9290 0.0659 41 1 1.2081 -0.4299 -2.1706 42 1 2.8777 0.1859 -2.1328 43 1 1.8163 -1.9658 -3.9757 44 1 3.4856 -1.3494 -3.9379 45 1 4.5737 -0.5857 -5.9702 46 1 4.6947 -0.7663 -8.4229 47 1 2.7560 -1.5971 -9.6934 48 1 0.6923 -2.2367 -8.5122 49 1 0.5741 -2.0640 -6.0588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189900620.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:21 Heat of formation + Delta-G solvation = -51.498262 kcal Electronic energy + Delta-G solvation = -27942.644977 eV Core-core repulsion = 24256.180646 eV Total energy + Delta-G solvation = -3686.464331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.64754 -40.22658 -38.62499 -38.08690 -35.19542 -33.61278 -32.97675 -31.79835 -31.63776 -31.02483 -28.56672 -27.74945 -26.48082 -24.44437 -24.09148 -23.49045 -22.27120 -22.07475 -19.58130 -19.08981 -18.17210 -17.80858 -17.45779 -17.21468 -16.63649 -16.31813 -16.17841 -15.86713 -15.74834 -15.23766 -15.00514 -14.80179 -14.46756 -14.26804 -14.12358 -14.01237 -13.73663 -13.64683 -13.36426 -13.11870 -13.04892 -12.94698 -12.91134 -12.47726 -12.44754 -12.30441 -12.05353 -11.99449 -11.90661 -11.87235 -11.73078 -11.40568 -11.09391 -10.76750 -10.64382 -10.63196 -9.82829 -9.76632 -9.33899 -8.28115 -6.29149 0.31793 0.49369 1.29516 1.35003 1.41279 1.73694 1.98950 2.32778 2.72910 3.05386 3.20248 3.59129 3.76168 3.90121 3.91800 3.98349 4.06582 4.13862 4.14651 4.24479 4.28246 4.35949 4.41418 4.45063 4.64297 4.64902 4.68942 4.76198 4.79438 4.84866 4.90722 4.94821 5.04867 5.06986 5.09335 5.14663 5.17160 5.18268 5.40389 5.44964 5.52137 5.53564 5.59472 5.66277 5.66652 5.75381 6.06352 6.11616 6.34133 6.72697 6.76930 7.28813 7.44868 8.87699 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014905 B = 0.003430 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.158423 B = 8161.688414 C = 8969.820137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.149 4.149 3 C 0.150 3.850 4 C -0.160 4.160 5 C -0.149 4.149 6 N -0.582 5.582 7 C 0.223 3.777 8 C -0.520 4.520 9 H 0.054 0.946 10 C 0.013 3.987 11 N -0.944 5.944 12 Si 0.932 3.068 13 H -0.285 1.285 14 H -0.277 1.277 15 H -0.241 1.241 16 C 0.502 3.498 17 O -0.589 6.589 18 C 0.042 3.958 19 O -0.396 6.396 20 C 0.095 3.905 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.132 4.132 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.118 4.118 27 H 0.019 0.981 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.096 0.904 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.004 0.996 40 H 0.265 0.735 41 H 0.105 0.895 42 H 0.118 0.882 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.135 0.865 46 H 0.146 0.854 47 H 0.147 0.853 48 H 0.140 0.860 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.384 -16.037 -4.979 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.067 3.933 4 C -0.218 4.218 5 C -0.207 4.207 6 N -0.314 5.314 7 C 0.101 3.899 8 C -0.559 4.559 9 H 0.072 0.928 10 C -0.184 4.184 11 N -0.585 5.585 12 Si 0.757 3.243 13 H -0.212 1.212 14 H -0.202 1.202 15 H -0.164 1.164 16 C 0.291 3.709 17 O -0.469 6.469 18 C -0.036 4.036 19 O -0.316 6.316 20 C 0.020 3.980 21 C -0.110 4.110 22 C -0.130 4.130 23 C -0.150 4.150 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.136 4.136 27 H 0.038 0.962 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.114 0.886 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.115 0.885 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.022 0.978 40 H 0.074 0.926 41 H 0.122 0.878 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.152 0.848 46 H 0.164 0.836 47 H 0.164 0.836 48 H 0.158 0.842 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 17.971 -15.452 -5.512 24.333 hybrid contribution -0.907 1.181 0.026 1.490 sum 17.064 -14.271 -5.486 22.911 Atomic orbital electron populations 1.21788 0.96928 1.00971 1.00811 1.22600 0.95371 0.94968 1.05658 1.20914 0.93076 0.92194 0.87163 1.22404 0.92714 1.03730 1.02915 1.22107 1.02551 1.00655 0.95341 1.48087 1.54502 1.21459 1.07385 1.19360 0.92200 0.82638 0.95708 1.21698 0.93004 0.94490 1.46697 0.92760 1.25683 0.94916 1.03105 0.94721 1.70030 1.05421 1.32161 1.50922 0.85944 0.80235 0.80202 0.77962 1.21160 1.20184 1.16428 1.20825 0.78602 0.88936 0.82571 1.90647 1.48934 1.62178 1.45138 1.23362 1.03322 0.93659 0.83242 1.88076 1.87226 1.34361 1.21938 1.21594 1.00306 0.84389 0.91738 1.19822 0.95188 1.01073 0.94914 1.21344 0.97922 0.98344 0.95379 1.21495 0.99918 0.99623 0.93914 1.21560 0.93059 0.98021 1.01245 1.21464 0.99171 1.00467 0.94115 1.21330 0.97874 0.99230 0.95187 0.96161 0.91381 0.93724 0.88610 0.87116 0.92424 0.87530 0.92195 0.93066 0.88517 0.92793 0.92697 0.97778 0.92650 0.87760 0.86438 0.90946 0.89682 0.84751 0.83628 0.83571 0.84167 0.85793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.76 8.02 71.98 0.58 -4.18 16 2 C -0.15 -3.46 4.27 30.60 0.13 -3.33 16 3 C 0.15 4.24 0.71 3.61 0.00 4.24 16 4 C -0.16 -3.25 8.45 71.98 0.61 -2.64 16 5 C -0.15 -4.32 7.06 71.98 0.51 -3.81 16 6 N -0.58 -23.57 1.71 -779.05 -1.33 -24.91 16 7 C 0.22 10.96 3.60 85.63 0.31 11.27 16 8 C -0.52 -30.05 9.05 25.60 0.23 -29.82 16 9 H 0.05 3.40 5.83 -2.91 -0.02 3.38 16 10 C 0.01 0.79 5.47 84.66 0.46 1.25 16 11 N -0.94 -59.99 13.96 21.45 0.30 -59.69 16 12 Si 0.93 45.81 27.38 68.60 1.88 47.68 16 13 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 15 H -0.24 -10.69 6.67 99.48 0.66 -10.02 16 16 C 0.50 21.77 6.14 87.66 0.54 22.31 16 17 O -0.59 -32.85 16.14 15.79 0.25 -32.59 16 18 C 0.04 1.28 3.97 71.24 0.28 1.57 16 19 O -0.40 -13.34 9.88 -130.15 -1.29 -14.63 16 20 C 0.10 2.18 6.06 71.24 0.43 2.62 16 21 C -0.11 -2.68 5.51 -19.86 -0.11 -2.79 16 22 C -0.11 -2.42 9.70 22.27 0.22 -2.21 16 23 C -0.13 -2.46 10.05 22.27 0.22 -2.24 16 24 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 25 C -0.13 -2.74 10.05 22.27 0.22 -2.51 16 26 C -0.12 -2.82 9.70 22.27 0.22 -2.60 16 27 H 0.02 0.81 5.40 -2.39 -0.01 0.80 16 28 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.04 1.65 6.29 -2.39 -0.02 1.64 16 30 H 0.10 1.86 3.65 -2.39 -0.01 1.85 16 31 H 0.11 1.78 8.13 -2.39 -0.02 1.76 16 32 H 0.06 1.25 8.09 -2.39 -0.02 1.23 16 33 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.06 1.21 5.35 -2.39 -0.01 1.19 16 35 H 0.05 1.89 5.70 -2.39 -0.01 1.88 16 36 H 0.10 1.98 8.14 -2.39 -0.02 1.97 16 37 H 0.05 1.60 6.73 -2.39 -0.02 1.59 16 38 H 0.06 2.49 5.18 -2.38 -0.01 2.47 16 39 H 0.00 0.23 6.64 -2.39 -0.02 0.21 16 40 H 0.26 15.80 8.31 -92.70 -0.77 15.03 16 41 H 0.11 2.85 5.20 -2.39 -0.01 2.84 16 42 H 0.12 2.59 4.44 -2.39 -0.01 2.58 16 43 H 0.07 1.40 8.08 -2.39 -0.02 1.38 16 44 H 0.09 1.42 8.09 -2.39 -0.02 1.40 16 45 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 46 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 47 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 49 H 0.12 2.78 8.06 -2.91 -0.02 2.76 16 Total: -1.00 -83.55 373.60 5.80 -77.76 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.91 Total: 21.24 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 5.08 Total: -14.86 kcal Atomic # 7 Polarization: -83.57 SS G_CDS: -1.03 Total: -84.60 kcal Atomic # 8 Polarization: -46.19 SS G_CDS: -1.03 Total: -47.22 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.88 Total: 47.68 kcal Total: -83.55 5.80 -77.76 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189900620.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.259 kcal (2) G-P(sol) polarization free energy of solvation -83.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds