Wall clock time and date at job start Tue Mar 31 2020 12:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47375 * 2 1 4 4 C 1.52999 * 109.47037 * 185.58337 * 3 2 1 5 5 C 1.52996 * 109.47138 * 65.58054 * 3 2 1 6 6 N 1.46507 * 109.46933 * 305.58391 * 3 2 1 7 7 C 1.46491 * 119.99833 * 121.38705 * 6 3 2 8 8 C 1.50695 * 109.47429 * 87.79043 * 7 6 3 9 9 H 1.08008 * 119.99999 * 2.47335 * 8 7 6 10 10 C 1.37876 * 120.00247 * 182.47576 * 8 7 6 11 11 N 1.31510 * 120.00073 * 5.46594 * 10 8 7 12 12 Si 1.86804 * 119.99963 * 185.46592 * 10 8 7 13 13 H 1.48497 * 109.47202 * 3.93901 * 12 10 8 14 14 H 1.48502 * 109.46988 * 123.93882 * 12 10 8 15 15 H 1.48501 * 109.47190 * 243.93478 * 12 10 8 16 16 C 1.34779 * 119.99883 * 301.38355 * 6 3 2 17 17 O 1.21280 * 119.99907 * 355.43444 * 16 6 3 18 18 C 1.50700 * 120.00033 * 175.43391 * 16 6 3 19 19 H 1.08997 * 109.46971 * 319.12737 * 18 16 6 20 20 O 1.42895 * 109.47109 * 199.12283 * 18 16 6 21 21 C 1.42901 * 114.00228 * 150.00282 * 20 18 16 22 22 C 1.50701 * 109.46738 * 79.12251 * 18 16 6 23 23 C 1.38229 * 120.00009 * 76.86446 * 22 18 16 24 24 C 1.38238 * 119.99933 * 179.80396 * 23 22 18 25 25 C 1.38236 * 119.99804 * 0.40394 * 24 23 22 26 26 C 1.38237 * 120.00240 * 359.84733 * 25 24 23 27 27 C 1.38233 * 119.99700 * 257.13400 * 22 18 16 28 28 H 1.09001 * 109.47222 * 304.34243 * 1 2 3 29 29 H 1.09006 * 109.46643 * 64.34385 * 1 2 3 30 30 H 1.09000 * 109.47353 * 184.33986 * 1 2 3 31 31 H 1.09004 * 109.47017 * 239.99704 * 2 1 3 32 32 H 1.09001 * 109.46983 * 120.00229 * 2 1 3 33 33 H 1.09002 * 109.47179 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.47026 * 300.00011 * 4 3 2 35 35 H 1.09001 * 109.47028 * 59.99785 * 4 3 2 36 36 H 1.09001 * 109.47176 * 304.08498 * 5 3 2 37 37 H 1.09001 * 109.46802 * 64.08180 * 5 3 2 38 38 H 1.09001 * 109.47118 * 184.07659 * 5 3 2 39 39 H 1.09005 * 109.46736 * 207.79132 * 7 6 3 40 40 H 1.08999 * 109.47193 * 327.78273 * 7 6 3 41 41 H 0.96998 * 120.00513 * 180.02562 * 11 10 8 42 42 H 1.08994 * 109.47358 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.46865 * 300.00012 * 21 20 18 44 44 H 1.09000 * 109.46875 * 59.99489 * 21 20 18 45 45 H 1.07998 * 120.00260 * 359.97438 * 23 22 18 46 46 H 1.07994 * 120.00212 * 180.22470 * 24 23 22 47 47 H 1.08005 * 119.99837 * 179.83100 * 25 24 23 48 48 H 1.07991 * 120.00058 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00302 * 359.97438 * 27 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5636 1.4446 -0.1403 5 6 1.6479 2.1221 1.3134 6 7 1.4451 2.1708 -1.1234 7 6 0.6457 3.3731 -0.8756 8 6 1.5495 4.5784 -0.8386 9 1 2.6075 4.4660 -1.0245 10 6 1.0258 5.8247 -0.5672 11 7 -0.2407 5.9477 -0.2352 12 14 2.1154 7.3385 -0.6712 13 1 3.4638 6.9457 -1.1538 14 1 1.5167 8.3153 -1.6159 15 1 2.2319 7.9579 0.6734 16 6 1.6332 1.7346 -2.3847 17 8 2.3621 0.7888 -2.5968 18 6 0.9379 2.4222 -3.5313 19 1 -0.0847 2.6652 -3.2429 20 8 0.9193 1.5543 -4.6664 21 6 -0.2071 1.7443 -5.5250 22 6 1.6762 3.6890 -3.8795 23 6 2.8556 3.6264 -4.5978 24 6 3.5307 4.7888 -4.9206 25 6 3.0307 6.0130 -4.5179 26 6 1.8540 6.0752 -3.7951 27 6 1.1769 4.9131 -3.4757 28 1 -0.3634 0.5797 0.8485 29 1 -0.3633 0.4450 -0.9264 30 1 -0.3634 -1.0247 0.0778 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.9270 2.4723 -0.1408 34 1 4.0062 0.9027 0.6954 35 1 3.8430 0.9604 -1.0761 36 1 0.5682 2.0564 1.4483 37 1 2.1487 1.6242 2.1438 38 1 1.9474 3.1697 1.2840 39 1 -0.0872 3.4929 -1.6736 40 1 0.1300 3.2761 0.0797 41 1 -0.6093 6.8245 -0.0447 42 1 -0.1477 1.0483 -6.3617 43 1 -1.1249 1.5622 -4.9659 44 1 -0.2082 2.7671 -5.9019 45 1 3.2482 2.6697 -4.9091 46 1 4.4502 4.7402 -5.4849 47 1 3.5596 6.9209 -4.7678 48 1 1.4636 7.0316 -3.4802 49 1 0.2575 4.9617 -2.9111 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189957936.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:38 Heat of formation + Delta-G solvation = -58.295086 kcal Electronic energy + Delta-G solvation = -30095.881212 eV Core-core repulsion = 26409.122149 eV Total energy + Delta-G solvation = -3686.759063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71817 -39.99001 -38.62486 -37.47622 -35.58880 -33.94968 -32.53791 -31.65510 -31.28455 -29.48843 -28.62230 -27.82156 -26.64704 -24.79660 -24.15973 -23.33158 -22.92754 -21.54184 -19.33435 -18.52306 -18.15535 -17.83453 -17.59303 -16.62149 -16.54053 -16.38453 -15.95179 -15.64954 -15.36972 -15.34902 -15.21104 -14.46862 -14.32754 -14.30511 -14.01099 -13.92028 -13.58890 -13.47192 -13.27389 -13.13015 -12.84112 -12.77242 -12.71813 -12.57508 -12.41602 -12.34285 -12.18467 -12.02100 -11.96958 -11.77068 -11.65905 -11.52669 -11.32051 -10.88366 -10.52892 -10.28609 -9.62757 -9.47388 -9.30108 -8.13461 -6.14851 0.47091 0.68355 1.34733 1.42754 1.51357 1.79003 2.02362 2.43965 2.93102 3.12827 3.18505 3.76302 3.79598 3.94894 4.04186 4.12310 4.18361 4.22755 4.25834 4.39818 4.43747 4.51849 4.57068 4.66295 4.72065 4.74875 4.79508 4.81511 4.84146 4.85908 4.96564 5.03729 5.08602 5.13441 5.18065 5.25138 5.27881 5.29585 5.38829 5.50772 5.60569 5.65309 5.71523 5.76740 5.80026 5.97559 6.16060 6.17686 6.22903 6.67241 6.92263 7.39566 7.51051 8.91161 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010257 B = 0.008061 C = 0.005606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2729.292168 B = 3472.879397 C = 4993.200099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.127 4.127 3 C 0.172 3.828 4 C -0.151 4.151 5 C -0.142 4.142 6 N -0.579 5.579 7 C 0.243 3.757 8 C -0.497 4.497 9 H 0.039 0.961 10 C 0.050 3.950 11 N -0.908 5.908 12 Si 0.911 3.089 13 H -0.274 1.274 14 H -0.269 1.269 15 H -0.294 1.294 16 C 0.522 3.478 17 O -0.568 6.568 18 C 0.126 3.874 19 H 0.086 0.914 20 O -0.379 6.379 21 C 0.024 3.976 22 C -0.125 4.125 23 C -0.095 4.095 24 C -0.143 4.143 25 C -0.113 4.113 26 C -0.150 4.150 27 C -0.036 4.036 28 H 0.060 0.940 29 H 0.029 0.971 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.037 0.963 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.056 0.944 39 H 0.022 0.978 40 H 0.038 0.962 41 H 0.265 0.735 42 H 0.109 0.891 43 H 0.050 0.950 44 H 0.045 0.955 45 H 0.113 0.887 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.110 0.890 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -4.531 -4.242 6.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.165 4.165 3 C 0.088 3.912 4 C -0.209 4.209 5 C -0.200 4.200 6 N -0.310 5.310 7 C 0.122 3.878 8 C -0.536 4.536 9 H 0.058 0.942 10 C -0.151 4.151 11 N -0.548 5.548 12 Si 0.739 3.261 13 H -0.199 1.199 14 H -0.194 1.194 15 H -0.221 1.221 16 C 0.309 3.691 17 O -0.449 6.449 18 C 0.065 3.935 19 H 0.104 0.896 20 O -0.297 6.297 21 C -0.072 4.072 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.161 4.161 25 C -0.131 4.131 26 C -0.168 4.168 27 C -0.054 4.054 28 H 0.079 0.921 29 H 0.048 0.952 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.100 0.900 38 H 0.075 0.925 39 H 0.040 0.960 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.128 0.872 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.132 0.868 46 H 0.160 0.840 47 H 0.156 0.844 48 H 0.128 0.872 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 0.758 -5.024 -4.314 6.666 hybrid contribution 0.188 1.504 0.170 1.525 sum 0.946 -3.521 -4.144 5.519 Atomic orbital electron populations 1.21678 0.95381 1.01626 1.01015 1.21860 0.96612 0.95246 1.02751 1.20454 0.92694 0.91713 0.86307 1.22104 0.95246 1.00997 1.02544 1.22050 1.01757 1.01177 0.94973 1.48213 1.50823 1.27551 1.04408 1.19352 0.90240 0.80802 0.97360 1.21266 0.93962 0.91930 1.46415 0.94240 1.25103 0.95323 0.99868 0.94846 1.69965 1.13418 1.24559 1.46820 0.86268 0.80514 0.81976 0.77303 1.19919 1.19411 1.22082 1.20160 0.81761 0.83100 0.84037 1.90522 1.39310 1.30289 1.84759 1.20621 0.98825 0.87887 0.86171 0.89635 1.87940 1.47044 1.58887 1.35859 1.23058 0.87698 1.02198 0.94258 1.19745 0.97556 0.93367 1.01914 1.20953 0.94224 0.98636 0.97530 1.21191 1.00842 0.91813 1.02290 1.21353 0.95632 0.98549 0.97532 1.21063 0.97085 0.98003 1.00694 1.20938 0.99825 0.91514 0.93127 0.92096 0.95189 0.91547 0.92372 0.89419 0.94415 0.90230 0.92795 0.92125 0.90045 0.92516 0.95985 0.94361 0.92535 0.87226 0.93137 0.93589 0.86843 0.84032 0.84354 0.87170 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.47 71.98 0.68 -3.50 16 2 C -0.13 -4.03 4.65 30.59 0.14 -3.89 16 3 C 0.17 6.19 0.73 3.60 0.00 6.19 16 4 C -0.15 -5.45 8.42 71.98 0.61 -4.85 16 5 C -0.14 -4.79 7.07 71.98 0.51 -4.29 16 6 N -0.58 -23.53 1.56 -779.10 -1.22 -24.74 16 7 C 0.24 10.69 4.02 85.63 0.34 11.03 16 8 C -0.50 -23.64 5.01 25.60 0.13 -23.51 16 9 H 0.04 2.06 7.82 -2.91 -0.02 2.03 16 10 C 0.05 2.40 4.27 84.65 0.36 2.76 16 11 N -0.91 -45.62 13.30 21.45 0.29 -45.34 16 12 Si 0.91 40.19 26.48 68.60 1.82 42.01 16 13 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 14 H -0.27 -11.29 6.91 99.48 0.69 -10.60 16 15 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 16 C 0.52 22.16 5.96 87.66 0.52 22.68 16 17 O -0.57 -26.12 12.90 15.27 0.20 -25.92 16 18 C 0.13 4.91 2.02 29.10 0.06 4.97 16 19 H 0.09 3.26 5.98 -2.39 -0.01 3.25 16 20 O -0.38 -13.89 9.40 -130.68 -1.23 -15.12 16 21 C 0.02 0.64 10.81 113.37 1.23 1.86 16 22 C -0.12 -4.90 4.49 -19.87 -0.09 -4.99 16 23 C -0.10 -3.54 9.33 22.27 0.21 -3.34 16 24 C -0.14 -4.68 10.05 22.27 0.22 -4.46 16 25 C -0.11 -3.73 10.05 22.27 0.22 -3.51 16 26 C -0.15 -5.67 8.11 22.27 0.18 -5.49 16 27 C -0.04 -1.44 5.82 22.27 0.13 -1.31 16 28 H 0.06 1.75 6.32 -2.39 -0.02 1.73 16 29 H 0.03 1.00 7.32 -2.38 -0.02 0.99 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.06 2.12 6.40 -2.38 -0.02 2.11 16 32 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.05 2.16 6.12 -2.39 -0.01 2.15 16 36 H 0.06 2.03 5.36 -2.39 -0.01 2.01 16 37 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.06 2.24 6.71 -2.39 -0.02 2.22 16 39 H 0.02 1.02 4.47 -2.38 -0.01 1.01 16 40 H 0.04 1.77 5.95 -2.39 -0.01 1.76 16 41 H 0.27 12.89 8.31 -92.71 -0.77 12.12 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.05 1.23 8.08 -2.39 -0.02 1.21 16 44 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.11 4.28 7.87 -2.91 -0.02 4.26 16 46 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 47 H 0.14 3.72 8.06 -2.91 -0.02 3.70 16 48 H 0.11 4.13 6.60 -2.92 -0.02 4.11 16 49 H 0.12 5.11 5.64 -2.91 -0.02 5.10 16 Total: -1.00 -56.88 367.08 6.23 -50.65 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.92 Total: 32.10 kcal Atomic # 6 Polarization: -19.09 SS G_CDS: 5.46 Total: -13.63 kcal Atomic # 7 Polarization: -69.15 SS G_CDS: -0.93 Total: -70.08 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: -1.03 Total: -41.04 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 1.82 Total: 42.01 kcal Total: -56.88 6.23 -50.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189957936.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.640 kcal (2) G-P(sol) polarization free energy of solvation -56.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds