Wall clock time and date at job start Tue Mar 31 2020 12:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47114 * 2 1 4 4 C 1.53000 * 109.47397 * 186.07721 * 3 2 1 5 5 C 1.52996 * 109.47429 * 66.06919 * 3 2 1 6 6 N 1.46507 * 109.46739 * 306.07149 * 3 2 1 7 7 C 1.46505 * 119.99480 * 125.37713 * 6 3 2 8 8 C 1.50698 * 109.46982 * 273.43328 * 7 6 3 9 9 H 1.07997 * 120.00226 * 359.97438 * 8 7 6 10 10 C 1.37882 * 119.99776 * 179.97438 * 8 7 6 11 11 N 1.31513 * 120.00218 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99641 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47486 * 90.00225 * 12 10 8 14 14 H 1.48498 * 109.47105 * 210.00066 * 12 10 8 15 15 H 1.48501 * 109.47596 * 329.99803 * 12 10 8 16 16 C 1.34769 * 120.00028 * 305.37614 * 6 3 2 17 17 O 1.21278 * 120.00363 * 4.26650 * 16 6 3 18 18 C 1.50700 * 119.99848 * 184.26633 * 16 6 3 19 19 H 1.09000 * 109.47112 * 45.88219 * 18 16 6 20 20 O 1.42901 * 109.47109 * 165.88115 * 18 16 6 21 21 C 1.42902 * 114.00105 * 269.99875 * 20 18 16 22 22 C 1.50701 * 109.47415 * 285.88105 * 18 16 6 23 23 C 1.38237 * 120.00000 * 107.03845 * 22 18 16 24 24 C 1.38232 * 120.00108 * 180.02562 * 23 22 18 25 25 C 1.38237 * 119.99726 * 359.95779 * 24 23 22 26 26 C 1.38240 * 120.00315 * 0.02562 * 25 24 23 27 27 C 1.38235 * 119.99779 * 287.02498 * 22 18 16 28 28 H 1.09002 * 109.46759 * 185.45428 * 1 2 3 29 29 H 1.08997 * 109.47517 * 305.45235 * 1 2 3 30 30 H 1.09002 * 109.46940 * 65.45792 * 1 2 3 31 31 H 1.08997 * 109.47442 * 239.99454 * 2 1 3 32 32 H 1.09003 * 109.47000 * 119.99489 * 2 1 3 33 33 H 1.08998 * 109.47205 * 179.97438 * 4 3 2 34 34 H 1.09009 * 109.46567 * 299.99529 * 4 3 2 35 35 H 1.09000 * 109.47430 * 59.99373 * 4 3 2 36 36 H 1.09000 * 109.47515 * 302.21927 * 5 3 2 37 37 H 1.09007 * 109.47059 * 62.21493 * 5 3 2 38 38 H 1.09006 * 109.47397 * 182.20995 * 5 3 2 39 39 H 1.08999 * 109.47312 * 33.44204 * 7 6 3 40 40 H 1.09004 * 109.46607 * 153.44186 * 7 6 3 41 41 H 0.96992 * 119.99832 * 180.02562 * 11 10 8 42 42 H 1.08999 * 109.46793 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.46967 * 299.99907 * 21 20 18 44 44 H 1.08996 * 109.47023 * 60.00247 * 21 20 18 45 45 H 1.08003 * 119.99632 * 359.97438 * 23 22 18 46 46 H 1.07998 * 120.00131 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.99967 * 179.72257 * 25 24 23 48 48 H 1.07999 * 120.00032 * 179.97438 * 26 25 24 49 49 H 1.07998 * 120.00198 * 359.97438 * 27 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5623 1.4452 -0.1527 5 6 1.6584 2.1184 1.3184 6 7 1.4360 2.1739 -1.1165 7 6 0.7124 3.4232 -0.8676 8 6 -0.7226 3.1134 -0.5271 9 1 -1.0618 2.0884 -0.4993 10 6 -1.6024 4.1384 -0.2511 11 7 -1.1895 5.3866 -0.2854 12 14 -3.3809 3.7542 0.1717 13 1 -3.5137 3.5778 1.6401 14 1 -4.2484 4.8746 -0.2726 15 1 -3.7946 2.5050 -0.5164 16 6 1.5460 1.6975 -2.3724 17 8 2.0772 0.6253 -2.5699 18 6 1.0089 2.4971 -3.5313 19 1 1.3176 3.5375 -3.4290 20 8 1.5219 1.9662 -4.7548 21 6 2.7553 2.5550 -5.1721 22 6 -0.4960 2.4184 -3.5415 23 6 -1.2481 3.5156 -3.1656 24 6 -2.6285 3.4433 -3.1744 25 6 -3.2569 2.2739 -3.5600 26 6 -2.5048 1.1767 -3.9363 27 6 -1.1243 1.2490 -3.9271 28 1 -0.3633 -1.0230 0.0977 29 1 -0.3634 0.5960 0.8371 30 1 -0.3633 0.4269 -0.9348 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.9256 2.4729 -0.1532 34 1 4.0118 0.9010 0.6780 35 1 3.8342 0.9637 -1.0920 36 1 0.5765 2.0815 1.4459 37 1 2.1397 1.5976 2.1464 38 1 1.9872 3.1575 1.3026 39 1 1.1771 3.9528 -0.0359 40 1 0.7472 4.0473 -1.7607 41 1 -1.8084 6.1076 -0.0909 42 1 3.0780 2.0978 -6.1074 43 1 2.6150 3.6258 -5.3200 44 1 3.5138 2.3902 -4.4069 45 1 -0.7572 4.4292 -2.8641 46 1 -3.2161 4.3004 -2.8803 47 1 -4.3353 2.2158 -3.5627 48 1 -2.9957 0.2630 -4.2372 49 1 -0.5368 0.3920 -4.2214 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000189957956.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:42 Heat of formation + Delta-G solvation = -54.337588 kcal Electronic energy + Delta-G solvation = -30448.683029 eV Core-core repulsion = 26762.095576 eV Total energy + Delta-G solvation = -3686.587453 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.74341 -39.85980 -38.73443 -37.32556 -35.41828 -33.95942 -32.61131 -31.56682 -31.29472 -29.48755 -28.39765 -27.64158 -26.80498 -24.68048 -24.22516 -23.25884 -22.89122 -21.51158 -19.39727 -18.45539 -18.04120 -17.73708 -17.62252 -16.57953 -16.48393 -16.32875 -15.83323 -15.67714 -15.36371 -15.29736 -15.10314 -14.44723 -14.25919 -14.19815 -14.01675 -13.85782 -13.67171 -13.29034 -13.24584 -13.14545 -12.93945 -12.76445 -12.65072 -12.50952 -12.37358 -12.30760 -11.99751 -11.93953 -11.89387 -11.71254 -11.62884 -11.52725 -11.18293 -11.11976 -10.47591 -10.09133 -9.52102 -9.36064 -9.24896 -8.03602 -6.03764 0.54546 0.75692 1.40733 1.47557 1.54876 1.80195 2.21513 2.51400 2.83342 3.16576 3.30273 3.73100 3.88068 3.95564 4.07157 4.16387 4.24202 4.25858 4.28699 4.43927 4.50846 4.52104 4.52482 4.69980 4.76592 4.78053 4.79086 4.81690 4.87106 4.90788 4.94645 5.07636 5.09601 5.20386 5.23476 5.26766 5.32327 5.37542 5.47258 5.51170 5.68363 5.70062 5.77719 5.85590 5.92349 6.01082 6.16460 6.26340 6.29077 6.74297 7.03537 7.45297 7.61068 9.01883 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010667 B = 0.008338 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.245288 B = 3357.186722 C = 4621.693445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.124 4.124 3 C 0.169 3.831 4 C -0.148 4.148 5 C -0.141 4.141 6 N -0.579 5.579 7 C 0.241 3.759 8 C -0.498 4.498 9 H 0.062 0.938 10 C 0.053 3.947 11 N -0.912 5.912 12 Si 0.904 3.096 13 H -0.294 1.294 14 H -0.285 1.285 15 H -0.264 1.264 16 C 0.501 3.499 17 O -0.570 6.570 18 C 0.126 3.874 19 H 0.086 0.914 20 O -0.376 6.376 21 C 0.025 3.975 22 C -0.095 4.095 23 C -0.029 4.029 24 C -0.136 4.136 25 C -0.115 4.115 26 C -0.143 4.143 27 C -0.095 4.095 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.048 0.952 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.052 0.948 39 H 0.029 0.971 40 H 0.025 0.975 41 H 0.261 0.739 42 H 0.109 0.891 43 H 0.056 0.944 44 H 0.033 0.967 45 H 0.114 0.886 46 H 0.110 0.890 47 H 0.134 0.866 48 H 0.138 0.862 49 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.407 -3.923 -3.468 6.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.162 4.162 3 C 0.085 3.915 4 C -0.206 4.206 5 C -0.198 4.198 6 N -0.311 5.311 7 C 0.121 3.879 8 C -0.536 4.536 9 H 0.080 0.920 10 C -0.148 4.148 11 N -0.553 5.553 12 Si 0.732 3.268 13 H -0.221 1.221 14 H -0.210 1.210 15 H -0.188 1.188 16 C 0.289 3.711 17 O -0.451 6.451 18 C 0.065 3.935 19 H 0.104 0.896 20 O -0.294 6.294 21 C -0.071 4.071 22 C -0.096 4.096 23 C -0.047 4.047 24 C -0.154 4.154 25 C -0.132 4.132 26 C -0.161 4.161 27 C -0.113 4.113 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.097 0.903 38 H 0.071 0.929 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.070 0.930 42 H 0.127 0.873 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.152 0.848 48 H 0.156 0.844 49 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.538 -4.421 -3.639 6.731 hybrid contribution -0.971 0.514 0.629 1.266 sum 2.567 -3.907 -3.010 5.560 Atomic orbital electron populations 1.21727 0.96131 1.00026 1.01330 1.21860 0.95985 0.95908 1.02492 1.20477 0.92557 0.91843 0.86665 1.22084 0.94372 1.01707 1.02460 1.22044 1.02785 1.00018 0.94989 1.48329 1.52240 1.25302 1.05192 1.19378 0.91051 0.80687 0.96827 1.21564 0.94052 0.93240 1.44743 0.91964 1.25035 0.99478 0.94762 0.95488 1.69957 1.35900 0.98983 1.50420 0.86407 0.84110 0.78510 0.77746 1.22094 1.21049 1.18835 1.20983 0.78937 0.86329 0.84873 1.90516 1.46715 1.22572 1.85284 1.20681 0.92121 0.96593 0.84141 0.89642 1.87934 1.39688 1.64380 1.37373 1.23015 0.84878 0.98468 1.00696 1.19095 0.91661 0.95215 1.03604 1.20763 0.93952 0.97325 0.92672 1.20920 0.94611 0.98405 1.01495 1.21295 1.00324 0.93077 0.98553 1.21134 0.93249 0.99204 1.02494 1.20872 0.95048 0.96748 0.98631 0.93290 0.92778 0.94616 0.91555 0.90379 0.92910 0.89939 0.93336 0.91937 0.90324 0.92910 0.95325 0.95700 0.92956 0.87258 0.92557 0.94786 0.86764 0.87240 0.84839 0.84392 0.87232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 8.29 71.98 0.60 -4.39 16 2 C -0.12 -4.29 4.54 30.59 0.14 -4.15 16 3 C 0.17 5.88 0.73 3.60 0.00 5.88 16 4 C -0.15 -4.58 8.48 71.98 0.61 -3.97 16 5 C -0.14 -4.70 7.22 71.98 0.52 -4.18 16 6 N -0.58 -22.82 1.65 -779.08 -1.28 -24.11 16 7 C 0.24 10.39 4.05 85.63 0.35 10.73 16 8 C -0.50 -22.72 5.04 25.60 0.13 -22.59 16 9 H 0.06 3.00 4.60 -2.91 -0.01 2.99 16 10 C 0.05 2.49 3.90 84.66 0.33 2.82 16 11 N -0.91 -45.27 13.29 21.45 0.28 -44.98 16 12 Si 0.90 39.73 27.29 68.60 1.87 41.60 16 13 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 16 C 0.50 20.44 5.64 87.66 0.49 20.94 16 17 O -0.57 -25.02 12.90 15.63 0.20 -24.81 16 18 C 0.13 4.83 2.00 29.10 0.06 4.88 16 19 H 0.09 3.19 6.23 -2.39 -0.01 3.18 16 20 O -0.38 -13.71 9.51 -130.33 -1.24 -14.95 16 21 C 0.03 0.70 10.81 113.37 1.23 1.93 16 22 C -0.10 -3.74 4.18 -19.86 -0.08 -3.82 16 23 C -0.03 -1.16 5.57 22.27 0.12 -1.03 16 24 C -0.14 -5.16 7.71 22.27 0.17 -4.99 16 25 C -0.11 -3.90 10.05 22.27 0.22 -3.67 16 26 C -0.14 -4.81 10.05 22.27 0.22 -4.58 16 27 C -0.09 -3.58 9.29 22.27 0.21 -3.37 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 2.03 5.93 -2.39 -0.01 2.01 16 30 H 0.03 1.52 5.78 -2.39 -0.01 1.50 16 31 H 0.07 2.57 5.93 -2.39 -0.01 2.55 16 32 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.05 1.66 6.72 -2.39 -0.02 1.65 16 36 H 0.06 2.36 5.21 -2.39 -0.01 2.35 16 37 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 38 H 0.05 1.83 6.54 -2.38 -0.02 1.82 16 39 H 0.03 1.32 5.94 -2.39 -0.01 1.30 16 40 H 0.03 1.13 4.19 -2.38 -0.01 1.12 16 41 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 42 H 0.11 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.06 1.36 8.09 -2.39 -0.02 1.34 16 44 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.11 4.93 6.35 -2.91 -0.02 4.91 16 46 H 0.11 4.10 7.53 -2.91 -0.02 4.08 16 47 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 48 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 49 H 0.11 4.22 7.98 -2.91 -0.02 4.20 16 Total: -1.00 -54.53 361.93 6.10 -48.42 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.95 Total: 32.40 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.32 Total: -13.58 kcal Atomic # 7 Polarization: -68.09 SS G_CDS: -1.00 Total: -69.09 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -1.04 Total: -39.76 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 1.87 Total: 41.60 kcal Total: -54.53 6.10 -48.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189957956.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.916 kcal (2) G-P(sol) polarization free energy of solvation -54.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds