Wall clock time and date at job start Tue Mar 31 2020 12:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 C 1.53004 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47523 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47031 * 305.00127 * 5 4 3 7 7 C 1.53002 * 109.47471 * 64.99721 * 5 4 3 8 8 C 1.53002 * 109.46631 * 63.39118 * 7 5 4 9 9 C 1.52994 * 109.47259 * 185.00008 * 5 4 3 10 10 N 1.46501 * 109.47189 * 176.56678 * 9 5 4 11 11 C 1.34775 * 120.00156 * 174.85222 * 10 9 5 12 12 O 1.21594 * 119.99998 * 0.02562 * 11 10 9 13 13 C 1.47538 * 120.00386 * 179.97438 * 11 10 9 14 14 C 1.39666 * 120.19175 * 0.02562 * 13 11 10 15 15 C 1.37831 * 119.91903 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.32285 * 359.97438 * 15 14 13 17 17 C 1.38033 * 120.40089 * 0.02562 * 16 15 14 18 18 C 1.38833 * 120.06887 * 0.02562 * 17 16 15 19 19 O 1.35524 * 120.15957 * 179.97438 * 18 17 16 20 20 C 1.34814 * 116.99866 * 6.04540 * 19 18 17 21 21 H 1.08000 * 120.00385 * 4.68417 * 20 19 18 22 22 C 1.38697 * 120.00035 * 184.68776 * 20 19 18 23 23 N 1.31522 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47601 * 89.99782 * 24 22 20 26 26 H 1.48506 * 109.47164 * 209.99787 * 24 22 20 27 27 H 1.48507 * 109.47014 * 329.99418 * 24 22 20 28 28 H 1.09001 * 109.47310 * 59.99888 * 1 2 3 29 29 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46968 * 300.00296 * 1 2 3 31 31 H 1.09004 * 109.46968 * 239.99704 * 2 1 3 32 32 H 1.09001 * 109.47310 * 120.00112 * 2 1 3 33 33 H 1.08996 * 109.47462 * 59.99633 * 3 2 1 34 34 H 1.08999 * 109.47336 * 299.99938 * 3 2 1 35 35 H 1.09004 * 109.46905 * 59.99680 * 4 3 2 36 36 H 1.08999 * 109.46776 * 300.00295 * 4 3 2 37 37 H 1.08990 * 109.47285 * 183.39657 * 7 5 4 38 38 H 1.09005 * 109.47191 * 303.39705 * 7 5 4 39 39 H 1.08997 * 109.47511 * 296.00957 * 8 7 5 40 40 H 1.08998 * 109.46960 * 56.01852 * 8 7 5 41 41 H 1.09000 * 109.46711 * 176.01469 * 8 7 5 42 42 H 1.08999 * 109.47575 * 56.56688 * 9 5 4 43 43 H 1.08996 * 109.47014 * 296.56303 * 9 5 4 44 44 H 0.96999 * 120.00110 * 354.85201 * 10 9 5 45 45 H 1.07996 * 120.04588 * 359.97438 * 14 13 11 46 46 H 1.07994 * 119.83994 * 180.02562 * 15 14 13 47 47 H 1.07994 * 119.80201 * 179.74581 * 16 15 14 48 48 H 1.07998 * 119.96198 * 180.02562 * 17 16 15 49 49 H 0.96993 * 119.99975 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0013 6 1 3.6458 3.4242 -0.8406 7 6 3.6748 3.5686 1.3086 8 6 4.3525 2.8626 2.4847 9 6 5.6049 2.8867 -0.1238 10 7 6.0865 4.2678 -0.2056 11 6 7.4104 4.5203 -0.2168 12 8 8.2050 3.6018 -0.1594 13 6 7.8955 5.9112 -0.2998 14 6 6.9863 6.9694 -0.3665 15 6 7.4457 8.2665 -0.4444 16 6 8.8066 8.5272 -0.4565 17 6 9.7169 7.4916 -0.3912 18 6 9.2723 6.1787 -0.3133 19 8 10.1643 5.1604 -0.2497 20 6 11.4661 5.4932 -0.1395 21 1 11.7513 6.5290 -0.0296 22 6 12.4392 4.5052 -0.1674 23 7 12.0920 3.2437 -0.3008 24 14 14.2429 4.9662 -0.0141 25 1 14.6345 4.9640 1.4184 26 1 15.0705 3.9805 -0.7549 27 1 14.4578 6.3207 -0.5839 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9329 0.9287 0.8908 37 1 3.9853 4.6131 1.2839 38 1 2.5925 3.5141 1.4269 39 1 3.9880 1.8377 2.5523 40 1 5.4316 2.8552 2.3311 41 1 4.1208 3.3923 3.4088 42 1 5.8963 2.3463 -1.0245 43 1 6.0416 2.4008 0.7487 44 1 5.4526 5.0006 -0.2518 45 1 5.9247 6.7715 -0.3578 46 1 6.7416 9.0838 -0.4954 47 1 9.1573 9.5466 -0.5219 48 1 10.7759 7.7029 -0.4007 49 1 12.7724 2.5528 -0.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194117856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:20 Heat of formation + Delta-G solvation = -67.465965 kcal Electronic energy + Delta-G solvation = -26755.395593 eV Core-core repulsion = 23068.238850 eV Total energy + Delta-G solvation = -3687.156742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.64994 -38.61163 -37.40601 -36.30000 -34.93794 -32.98903 -32.31476 -30.56451 -30.22822 -28.90181 -27.71020 -25.39381 -24.63061 -23.79031 -22.66994 -21.46085 -21.07860 -19.80377 -19.20281 -18.01059 -17.44331 -16.23220 -16.09906 -15.53633 -15.32980 -14.68921 -14.58187 -14.30359 -14.18267 -14.02756 -13.90730 -13.71459 -13.34393 -13.14027 -12.83432 -12.65082 -12.55093 -12.39884 -12.32379 -11.93223 -11.69679 -11.57336 -11.37496 -11.28819 -11.11756 -11.08229 -10.88419 -10.85007 -10.75106 -10.54314 -10.49396 -10.44616 -10.28167 -9.56934 -8.87038 -8.79147 -8.45759 -8.23410 -7.28730 -6.42871 -4.02380 1.74763 2.33997 3.12864 3.13839 3.18396 3.75900 3.80384 3.94917 4.53999 4.64601 4.67433 4.74331 4.86116 4.97071 4.98875 5.12949 5.15672 5.23740 5.34846 5.38845 5.46743 5.52360 5.54893 5.57986 5.61531 5.68654 5.71869 5.75193 5.77791 5.81051 5.95549 5.98088 6.02959 6.05956 6.12835 6.15024 6.18200 6.23811 6.28045 6.48367 6.58552 6.72071 6.94059 7.04286 7.08453 7.26436 7.30451 7.71836 7.94189 8.19570 8.96946 9.16619 9.70058 10.71174 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002802 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.229750 B = 9992.186873 C =11326.929877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.119 4.119 4 C -0.115 4.115 5 C -0.099 4.099 6 H 0.073 0.927 7 C -0.118 4.118 8 C -0.159 4.159 9 C 0.125 3.875 10 N -0.742 5.742 11 C 0.553 3.447 12 O -0.503 6.503 13 C -0.226 4.226 14 C -0.039 4.039 15 C -0.231 4.231 16 C -0.052 4.052 17 C -0.238 4.238 18 C 0.189 3.811 19 O -0.123 6.123 20 C -0.403 4.403 21 H 0.093 0.907 22 C 0.044 3.956 23 N -0.833 5.833 24 Si 0.941 3.059 25 H -0.272 1.272 26 H -0.276 1.276 27 H -0.266 1.266 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.064 0.936 41 H 0.050 0.950 42 H 0.058 0.942 43 H 0.071 0.929 44 H 0.390 0.610 45 H 0.111 0.889 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.131 0.869 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.980 0.430 1.306 19.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.156 4.156 4 C -0.153 4.153 5 C -0.118 4.118 6 H 0.092 0.908 7 C -0.156 4.156 8 C -0.216 4.216 9 C 0.001 3.999 10 N -0.398 5.398 11 C 0.342 3.658 12 O -0.377 6.377 13 C -0.231 4.231 14 C -0.057 4.057 15 C -0.250 4.250 16 C -0.070 4.070 17 C -0.257 4.257 18 C 0.129 3.871 19 O -0.022 6.022 20 C -0.479 4.479 21 H 0.111 0.889 22 C -0.164 4.164 23 N -0.465 5.465 24 Si 0.765 3.235 25 H -0.197 1.197 26 H -0.201 1.201 27 H -0.191 1.191 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.225 0.775 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.149 0.851 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.243 -0.811 1.330 18.309 hybrid contribution 0.561 0.771 -0.005 0.954 sum -17.682 -0.039 1.325 17.731 Atomic orbital electron populations 1.21777 0.96119 1.01415 1.01688 1.21543 0.95615 0.97189 1.02043 1.21649 0.95392 0.96530 1.02069 1.21606 0.95256 0.95781 1.02682 1.21414 0.94976 0.96997 0.98366 0.90819 1.21553 1.00110 0.99553 0.94367 1.21901 1.01824 1.00267 0.97597 1.21319 0.92451 0.84004 1.02084 1.45876 1.07208 1.07916 1.78752 1.18223 0.81521 0.89149 0.76873 1.90943 1.54055 1.45647 1.47096 1.18879 0.91268 0.92665 1.20306 1.20749 0.97130 0.92216 0.95652 1.20456 0.95273 0.95796 1.13517 1.20892 0.93099 0.97811 0.95228 1.21165 1.00590 0.92115 1.11848 1.19297 0.89168 0.88038 0.90613 1.84195 1.15810 1.28480 1.73674 1.21488 0.79174 0.94930 1.52285 0.88928 1.25383 1.00124 0.94607 0.96247 1.70127 1.34410 0.99510 1.42424 0.85731 0.80352 0.78659 0.78775 1.19748 1.20147 1.19081 0.92846 0.92965 0.92858 0.92078 0.92080 0.91739 0.92142 0.91714 0.91272 0.92025 0.91858 0.92669 0.91722 0.93104 0.92343 0.91125 0.77509 0.87140 0.87329 0.87227 0.85106 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.15 0.37 -0.64 16 2 C -0.13 -0.93 5.93 -26.74 -0.16 -1.09 16 3 C -0.12 -0.92 4.97 -26.73 -0.13 -1.05 16 4 C -0.12 -1.05 4.53 -26.73 -0.12 -1.17 16 5 C -0.10 -1.00 2.21 -90.62 -0.20 -1.20 16 6 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 7 C -0.12 -1.14 5.36 -26.73 -0.14 -1.28 16 8 C -0.16 -1.69 9.22 37.16 0.34 -1.35 16 9 C 0.13 1.81 4.76 -4.04 -0.02 1.79 16 10 N -0.74 -12.03 5.18 -61.35 -0.32 -12.35 16 11 C 0.55 12.30 7.76 -12.47 -0.10 12.21 16 12 O -0.50 -13.97 15.16 -16.57 -0.25 -14.23 16 13 C -0.23 -4.98 5.89 -104.81 -0.62 -5.59 16 14 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 15 C -0.23 -3.83 10.03 -39.61 -0.40 -4.23 16 16 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 17 C -0.24 -5.18 9.13 -39.44 -0.36 -5.54 16 18 C 0.19 4.74 6.66 -38.60 -0.26 4.49 16 19 O -0.12 -3.69 7.84 -21.07 -0.17 -3.85 16 20 C -0.40 -11.52 9.45 30.90 0.29 -11.22 16 21 H 0.09 2.40 5.29 -52.49 -0.28 2.12 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.83 -25.36 13.67 55.48 0.76 -24.60 16 24 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.49 6.49 -51.93 -0.34 0.15 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 37 H 0.06 0.61 7.28 -51.93 -0.38 0.23 16 38 H 0.06 0.52 6.41 -51.93 -0.33 0.19 16 39 H 0.05 0.53 6.61 -51.93 -0.34 0.19 16 40 H 0.06 0.85 6.07 -51.93 -0.32 0.53 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.13 6.08 -51.93 -0.32 0.82 16 44 H 0.39 5.11 5.77 -40.82 -0.24 4.88 16 45 H 0.11 1.47 6.40 -52.49 -0.34 1.14 16 46 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 47 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 48 H 0.13 2.81 5.71 -52.49 -0.30 2.51 16 49 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 387.92 15.07 5.85 5.85 Total: -1.00 -34.18 387.92 -9.23 -43.41 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -7.71 Total: 7.20 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.37 Total: -17.11 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.44 Total: -36.94 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.42 Total: -18.08 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.18 -9.23 -43.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194117856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.054 kcal (2) G-P(sol) polarization free energy of solvation -34.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds