Wall clock time and date at job start Tue Mar 31 2020 12:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52994 * 109.47419 * 2 1 4 4 C 1.53004 * 109.47523 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47523 * 180.02562 * 4 3 2 6 6 H 1.09004 * 109.47031 * 305.00127 * 5 4 3 7 7 C 1.53002 * 109.47471 * 64.99721 * 5 4 3 8 8 C 1.53002 * 109.46631 * 63.39118 * 7 5 4 9 9 C 1.52994 * 109.47259 * 185.00008 * 5 4 3 10 10 N 1.46501 * 109.47189 * 176.56678 * 9 5 4 11 11 C 1.34775 * 120.00156 * 174.85222 * 10 9 5 12 12 O 1.21594 * 119.99998 * 0.02562 * 11 10 9 13 13 C 1.47538 * 120.00386 * 179.97438 * 11 10 9 14 14 C 1.39666 * 120.19175 * 0.02562 * 13 11 10 15 15 C 1.37831 * 119.91903 * 180.02562 * 14 13 11 16 16 C 1.38575 * 120.32285 * 359.97438 * 15 14 13 17 17 C 1.38033 * 120.40089 * 0.02562 * 16 15 14 18 18 C 1.38833 * 120.06887 * 0.02562 * 17 16 15 19 19 O 1.35524 * 120.15957 * 179.97438 * 18 17 16 20 20 C 1.34814 * 116.99866 * 6.04540 * 19 18 17 21 21 H 1.08000 * 120.00385 * 4.68417 * 20 19 18 22 22 C 1.38697 * 120.00035 * 184.68776 * 20 19 18 23 23 N 1.31522 * 120.00023 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00097 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47601 * 89.99782 * 24 22 20 26 26 H 1.48506 * 109.47164 * 209.99787 * 24 22 20 27 27 H 1.48507 * 109.47014 * 329.99418 * 24 22 20 28 28 H 1.09001 * 109.47310 * 59.99888 * 1 2 3 29 29 H 1.09000 * 109.47166 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46968 * 300.00296 * 1 2 3 31 31 H 1.09004 * 109.46968 * 239.99704 * 2 1 3 32 32 H 1.09001 * 109.47310 * 120.00112 * 2 1 3 33 33 H 1.08996 * 109.47462 * 59.99633 * 3 2 1 34 34 H 1.08999 * 109.47336 * 299.99938 * 3 2 1 35 35 H 1.09004 * 109.46905 * 59.99680 * 4 3 2 36 36 H 1.08999 * 109.46776 * 300.00295 * 4 3 2 37 37 H 1.08990 * 109.47285 * 183.39657 * 7 5 4 38 38 H 1.09005 * 109.47191 * 303.39705 * 7 5 4 39 39 H 1.08997 * 109.47511 * 296.00957 * 8 7 5 40 40 H 1.08998 * 109.46960 * 56.01852 * 8 7 5 41 41 H 1.09000 * 109.46711 * 176.01469 * 8 7 5 42 42 H 1.08999 * 109.47575 * 56.56688 * 9 5 4 43 43 H 1.08996 * 109.47014 * 296.56303 * 9 5 4 44 44 H 0.96999 * 120.00110 * 354.85201 * 10 9 5 45 45 H 1.07996 * 120.04588 * 359.97438 * 14 13 11 46 46 H 1.07994 * 119.83994 * 180.02562 * 15 14 13 47 47 H 1.07994 * 119.80201 * 179.74581 * 16 15 14 48 48 H 1.07998 * 119.96198 * 180.02562 * 17 16 15 49 49 H 0.96993 * 119.99975 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8848 0.0013 6 1 3.6458 3.4242 -0.8406 7 6 3.6748 3.5686 1.3086 8 6 4.3525 2.8626 2.4847 9 6 5.6049 2.8867 -0.1238 10 7 6.0865 4.2678 -0.2056 11 6 7.4104 4.5203 -0.2168 12 8 8.2050 3.6018 -0.1594 13 6 7.8955 5.9112 -0.2998 14 6 6.9863 6.9694 -0.3665 15 6 7.4457 8.2665 -0.4444 16 6 8.8066 8.5272 -0.4565 17 6 9.7169 7.4916 -0.3912 18 6 9.2723 6.1787 -0.3133 19 8 10.1643 5.1604 -0.2497 20 6 11.4661 5.4932 -0.1395 21 1 11.7513 6.5290 -0.0296 22 6 12.4392 4.5052 -0.1674 23 7 12.0920 3.2437 -0.3008 24 14 14.2429 4.9662 -0.0141 25 1 14.6345 4.9640 1.4184 26 1 15.0705 3.9805 -0.7549 27 1 14.4578 6.3207 -0.5839 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8899 34 1 1.6767 1.9563 -0.8900 35 1 3.9337 0.9284 -0.8891 36 1 3.9329 0.9287 0.8908 37 1 3.9853 4.6131 1.2839 38 1 2.5925 3.5141 1.4269 39 1 3.9880 1.8377 2.5523 40 1 5.4316 2.8552 2.3311 41 1 4.1208 3.3923 3.4088 42 1 5.8963 2.3463 -1.0245 43 1 6.0416 2.4008 0.7487 44 1 5.4526 5.0006 -0.2518 45 1 5.9247 6.7715 -0.3578 46 1 6.7416 9.0838 -0.4954 47 1 9.1573 9.5466 -0.5219 48 1 10.7759 7.7029 -0.4007 49 1 12.7724 2.5528 -0.3200 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194117856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:19 Heat of formation + Delta-G solvation = -88.382361 kcal Electronic energy + Delta-G solvation = -26756.302596 eV Core-core repulsion = 23068.238850 eV Total energy + Delta-G solvation = -3688.063745 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31294 -40.06145 -38.70997 -38.00623 -35.88002 -34.38560 -34.22721 -32.08217 -31.00253 -30.56605 -28.76834 -27.35521 -25.72948 -24.74632 -24.00517 -22.99366 -21.86057 -21.41811 -20.20776 -19.83841 -19.06754 -17.82395 -17.13705 -16.91455 -16.47568 -16.32388 -15.92970 -15.80301 -15.68832 -15.33907 -15.23179 -14.99978 -14.66758 -14.35864 -14.18402 -13.88777 -13.56385 -13.54618 -13.46883 -13.17320 -13.05569 -12.95190 -12.70139 -12.51691 -12.32720 -12.28734 -12.12579 -12.02143 -11.79565 -11.55922 -11.46102 -11.36123 -11.30826 -11.08551 -10.83870 -10.58224 -10.06349 -9.75838 -9.03353 -8.45223 -6.15867 0.13202 0.73047 1.31460 1.43371 1.50748 2.11794 2.15444 2.32159 2.87675 3.24036 3.46044 3.70245 3.87619 3.88526 4.02200 4.09347 4.18579 4.23612 4.30188 4.35158 4.44554 4.52785 4.58447 4.63159 4.63291 4.67064 4.75875 4.87122 4.91759 4.94921 4.98999 5.01360 5.07170 5.11955 5.14285 5.16783 5.23242 5.31593 5.33260 5.36754 5.48588 5.48924 5.53356 5.59411 5.61562 5.64504 5.69858 5.95856 6.17653 6.73296 6.94202 7.51643 7.80774 8.75705 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015778 B = 0.002802 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.229750 B = 9992.186873 C =11326.929877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.111 4.111 4 C -0.114 4.114 5 C -0.085 4.085 6 H 0.093 0.907 7 C -0.115 4.115 8 C -0.159 4.159 9 C 0.123 3.877 10 N -0.713 5.713 11 C 0.546 3.454 12 O -0.573 6.573 13 C -0.245 4.245 14 C -0.030 4.030 15 C -0.200 4.200 16 C -0.041 4.041 17 C -0.258 4.258 18 C 0.147 3.853 19 O -0.189 6.189 20 C -0.426 4.426 21 H 0.106 0.894 22 C -0.024 4.024 23 N -0.907 5.907 24 Si 1.023 2.977 25 H -0.263 1.263 26 H -0.272 1.272 27 H -0.247 1.247 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.062 0.938 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.041 0.959 43 H 0.048 0.952 44 H 0.410 0.590 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.154 0.846 48 H 0.122 0.878 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.540 4.334 1.268 22.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.166 4.166 3 C -0.149 4.149 4 C -0.152 4.152 5 C -0.103 4.103 6 H 0.111 0.889 7 C -0.152 4.152 8 C -0.216 4.216 9 C -0.001 4.001 10 N -0.368 5.368 11 C 0.336 3.664 12 O -0.452 6.452 13 C -0.250 4.250 14 C -0.048 4.048 15 C -0.218 4.218 16 C -0.059 4.059 17 C -0.277 4.277 18 C 0.092 3.908 19 O -0.092 6.092 20 C -0.502 4.502 21 H 0.123 0.877 22 C -0.223 4.223 23 N -0.543 5.543 24 Si 0.841 3.159 25 H -0.188 1.188 26 H -0.197 1.197 27 H -0.170 1.170 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.081 0.919 40 H 0.049 0.951 41 H 0.077 0.923 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.249 0.751 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.172 0.828 48 H 0.140 0.860 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.916 3.181 1.290 22.183 hybrid contribution 1.242 -0.185 0.000 1.256 sum -20.674 2.996 1.290 20.930 Atomic orbital electron populations 1.21764 0.95276 1.01764 1.02055 1.21551 0.96347 0.96986 1.01719 1.21593 0.93634 0.96874 1.02778 1.21594 0.96676 0.94854 1.02109 1.21358 0.91056 0.98203 0.99724 0.88878 1.21574 1.01499 0.99197 0.92939 1.21890 0.99732 1.01281 0.98716 1.21451 0.95725 0.82552 1.00325 1.45609 1.05465 1.09480 1.76227 1.18563 0.82833 0.88922 0.76114 1.90923 1.56279 1.47570 1.50463 1.19328 0.91139 0.93973 1.20537 1.21299 0.98726 0.91322 0.93454 1.21183 0.95539 0.96761 1.08344 1.21439 0.93300 0.98661 0.92475 1.21308 1.01337 0.91933 1.13139 1.20119 0.90226 0.88999 0.91465 1.84194 1.16502 1.30689 1.77777 1.22025 0.79747 0.95767 1.52687 0.87654 1.26777 1.05615 0.94240 0.95646 1.70323 1.36087 1.01140 1.46721 0.84557 0.73119 0.79087 0.79157 1.18767 1.19673 1.16980 0.92505 0.92724 0.92416 0.92537 0.92419 0.90888 0.91412 0.92421 0.91972 0.91730 0.89223 0.91887 0.95114 0.92314 0.94063 0.93320 0.75143 0.82248 0.81740 0.82843 0.85988 0.92036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.91 71.98 0.71 -0.97 16 2 C -0.13 -1.69 5.93 30.59 0.18 -1.51 16 3 C -0.11 -1.44 4.97 30.59 0.15 -1.29 16 4 C -0.11 -1.97 4.53 30.59 0.14 -1.83 16 5 C -0.08 -1.58 2.21 -10.80 -0.02 -1.60 16 6 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 7 C -0.11 -1.89 5.36 30.60 0.16 -1.72 16 8 C -0.16 -3.27 9.22 71.98 0.66 -2.60 16 9 C 0.12 3.66 4.76 86.38 0.41 4.07 16 10 N -0.71 -22.91 5.18 -466.28 -2.42 -25.32 16 11 C 0.55 25.35 7.76 86.70 0.67 26.02 16 12 O -0.57 -34.73 15.16 16.88 0.26 -34.47 16 13 C -0.25 -10.82 5.89 -19.99 -0.12 -10.94 16 14 C -0.03 -0.90 9.53 22.52 0.21 -0.68 16 15 C -0.20 -5.34 10.03 22.25 0.22 -5.12 16 16 C -0.04 -1.27 10.03 22.30 0.22 -1.05 16 17 C -0.26 -11.19 9.13 22.36 0.20 -10.98 16 18 C 0.15 7.72 6.66 22.91 0.15 7.87 16 19 O -0.19 -12.25 7.84 0.80 0.01 -12.25 16 20 C -0.43 -26.21 9.45 67.93 0.64 -25.57 16 21 H 0.11 5.81 5.29 -2.91 -0.02 5.79 16 22 C -0.02 -1.44 5.49 84.85 0.47 -0.97 16 23 N -0.91 -60.24 13.67 21.62 0.30 -59.94 16 24 Si 1.02 44.86 29.55 68.60 2.03 46.89 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 27 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 28 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.84 6.49 -2.39 -0.02 0.83 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.16 6.37 -2.39 -0.02 1.14 16 37 H 0.06 1.04 7.28 -2.39 -0.02 1.02 16 38 H 0.09 1.09 6.41 -2.38 -0.02 1.07 16 39 H 0.06 1.17 6.61 -2.39 -0.02 1.16 16 40 H 0.03 0.83 6.07 -2.39 -0.01 0.82 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.69 6.08 -2.39 -0.01 1.68 16 44 H 0.41 9.52 5.77 -92.71 -0.54 8.98 16 45 H 0.16 3.22 6.40 -2.91 -0.02 3.20 16 46 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 47 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 48 H 0.12 5.38 5.71 -2.91 -0.02 5.37 16 49 H 0.27 16.44 8.31 -92.71 -0.77 15.67 16 Total: -1.00 -87.81 387.92 5.66 -82.15 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: 0.41 Total: 31.81 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: 5.08 Total: -28.87 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -2.12 Total: -85.26 kcal Atomic # 8 Polarization: -46.98 SS G_CDS: 0.26 Total: -46.72 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -87.81 5.66 -82.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194117856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.236 kcal (2) G-P(sol) polarization free energy of solvation -87.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds