Wall clock time and date at job start Tue Mar 31 2020 12:07:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.46876 * 2 1 4 4 C 1.53003 * 109.47033 * 240.00085 * 2 1 3 5 5 C 1.52996 * 109.47209 * 120.00032 * 2 1 3 6 6 C 1.52999 * 109.47282 * 78.21298 * 5 2 1 7 7 C 1.53002 * 109.47127 * 213.35314 * 6 5 2 8 8 C 1.52998 * 109.47172 * 93.35352 * 6 5 2 9 9 N 1.46497 * 109.47040 * 333.35046 * 6 5 2 10 10 C 1.34777 * 120.00316 * 183.88107 * 9 6 5 11 11 O 1.21591 * 119.99690 * 0.02562 * 10 9 6 12 12 C 1.47525 * 120.00264 * 180.02562 * 10 9 6 13 13 C 1.39674 * 120.19951 * 359.97438 * 12 10 9 14 14 C 1.37824 * 119.91820 * 180.02562 * 13 12 10 15 15 C 1.38560 * 120.33012 * 0.02562 * 14 13 12 16 16 C 1.38031 * 120.40078 * 0.02562 * 15 14 13 17 17 C 1.38831 * 120.07236 * 359.95094 * 16 15 14 18 18 O 1.35515 * 120.16618 * 180.02562 * 17 16 15 19 19 C 1.34820 * 116.99634 * 353.05023 * 18 17 16 20 20 H 1.08003 * 120.00134 * 5.17531 * 19 18 17 21 21 C 1.38702 * 119.99791 * 185.17316 * 19 18 17 22 22 N 1.31514 * 120.00332 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99738 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47373 * 60.00140 * 23 21 19 25 25 H 1.48500 * 109.46874 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46955 * 300.00194 * 23 21 19 27 27 H 1.09011 * 109.47137 * 241.66306 * 1 2 3 28 28 H 1.08996 * 109.47541 * 1.66371 * 1 2 3 29 29 H 1.08996 * 109.47436 * 121.66442 * 1 2 3 30 30 H 1.09004 * 109.47305 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.47136 * 300.00051 * 3 2 1 32 32 H 1.09000 * 109.47409 * 60.00225 * 3 2 1 33 33 H 1.08996 * 109.47376 * 296.17240 * 4 2 1 34 34 H 1.08993 * 109.46733 * 56.17870 * 4 2 1 35 35 H 1.09001 * 109.46705 * 176.17600 * 4 2 1 36 36 H 1.09003 * 109.47312 * 318.20629 * 5 2 1 37 37 H 1.09009 * 109.47015 * 198.20992 * 5 2 1 38 38 H 1.09001 * 109.47224 * 175.18747 * 7 6 5 39 39 H 1.08996 * 109.47276 * 295.18827 * 7 6 5 40 40 H 1.08997 * 109.47264 * 55.18920 * 7 6 5 41 41 H 1.08996 * 109.47218 * 275.04239 * 8 6 5 42 42 H 1.09000 * 109.47445 * 35.04377 * 8 6 5 43 43 H 1.09003 * 109.47295 * 155.04553 * 8 6 5 44 44 H 0.97005 * 119.99956 * 3.88847 * 9 6 5 45 45 H 1.08002 * 120.03388 * 0.28565 * 13 12 10 46 46 H 1.08005 * 119.82956 * 180.02562 * 14 13 12 47 47 H 1.08001 * 119.80840 * 179.97438 * 15 14 13 48 48 H 1.07999 * 119.96351 * 179.97438 * 16 15 14 49 49 H 0.96996 * 120.00274 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2492 6 6 1.9322 -2.2337 1.0447 7 6 1.6203 -2.9082 2.3821 8 6 3.2572 -2.7703 0.4995 9 7 0.8588 -2.5221 0.0903 10 6 0.5279 -3.7990 -0.1861 11 8 1.1199 -4.7116 0.3570 12 6 -0.5527 -4.0894 -1.1476 13 6 -1.2359 -3.0443 -1.7735 14 6 -2.2448 -3.3222 -2.6704 15 6 -2.5861 -4.6346 -2.9549 16 6 -1.9205 -5.6778 -2.3433 17 6 -0.9013 -5.4169 -1.4376 18 8 -0.2461 -6.4396 -0.8364 19 6 -0.7247 -7.6820 -1.0490 20 1 -1.5402 -7.8357 -1.7402 21 6 -0.1696 -8.7628 -0.3799 22 7 0.8232 -8.5756 0.4621 23 14 -0.8321 -10.4842 -0.6750 24 1 -0.6798 -10.8341 -2.1101 25 1 -0.0744 -11.4551 0.1548 26 1 -2.2692 -10.5319 -0.3036 27 1 -0.3634 -0.4878 0.9046 28 1 -0.3634 1.0272 -0.0298 29 1 -0.3634 -0.5394 -0.8746 30 1 3.1299 1.4426 -0.0005 31 1 1.6765 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.7337 -1.7668 -1.2157 34 1 1.6217 -0.2484 -2.1378 35 1 3.1278 -0.6622 -1.2842 36 1 1.4387 -0.4271 2.1095 37 1 3.0815 -0.4516 1.4246 38 1 1.4591 -3.9744 2.2224 39 1 2.4578 -2.7657 3.0649 40 1 0.7218 -2.4653 2.8117 41 1 3.2748 -2.6613 -0.5848 42 1 4.0835 -2.2081 0.9346 43 1 3.3574 -3.8239 0.7604 44 1 0.3863 -1.7940 -0.3428 45 1 -0.9710 -2.0197 -1.5580 46 1 -2.7719 -2.5129 -3.1539 47 1 -3.3784 -4.8428 -3.6588 48 1 -2.1927 -6.6981 -2.5700 49 1 1.2111 -9.3314 0.9303 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194148751.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:05 Heat of formation + Delta-G solvation = -7.342190 kcal Electronic energy + Delta-G solvation = -28860.686490 eV Core-core repulsion = 25176.136910 eV Total energy + Delta-G solvation = -3684.549580 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.78548 -39.02857 -37.27159 -36.33992 -34.28260 -32.33775 -32.15363 -29.84944 -28.91129 -28.02260 -27.45826 -26.58170 -26.19516 -25.36065 -23.25298 -21.59548 -20.45667 -19.15627 -19.00221 -17.95639 -17.51119 -16.19291 -15.65275 -14.82977 -14.72357 -14.62128 -14.45668 -14.34908 -13.92928 -13.76774 -13.67626 -13.39574 -13.18390 -13.02143 -12.86367 -12.47367 -12.39986 -11.98954 -11.86238 -11.72794 -11.67383 -11.62754 -11.35767 -11.23722 -11.12361 -11.05429 -10.87911 -10.82595 -10.67331 -10.66140 -10.57285 -10.45007 -10.06195 -9.49600 -8.85447 -8.58893 -8.27885 -8.14693 -7.28452 -6.42149 -4.01978 1.74397 2.33279 3.12879 3.14868 3.17205 3.79379 3.82127 3.95290 4.59997 4.63919 4.66896 4.69747 5.01092 5.12512 5.21565 5.21613 5.34465 5.40041 5.45826 5.53389 5.58677 5.59877 5.66831 5.73505 5.78985 5.82285 5.87222 5.89897 5.95936 6.01645 6.09209 6.12707 6.16417 6.19023 6.26147 6.30819 6.36284 6.50266 6.58849 6.70122 6.73296 6.81622 6.95488 7.07636 7.21402 7.26383 7.31388 7.71321 7.94837 8.27235 8.97563 9.21919 9.70241 10.71445 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.016523 B = 0.004250 C = 0.003543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1694.162631 B = 6587.125899 C = 7902.119180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.194 4.194 5 C -0.112 4.112 6 C 0.179 3.821 7 C -0.168 4.168 8 C -0.160 4.160 9 N -0.740 5.740 10 C 0.547 3.453 11 O -0.495 6.495 12 C -0.226 4.226 13 C -0.046 4.046 14 C -0.230 4.230 15 C -0.052 4.052 16 C -0.238 4.238 17 C 0.189 3.811 18 O -0.122 6.122 19 C -0.404 4.404 20 H 0.092 0.908 21 C 0.046 3.954 22 N -0.832 5.832 23 Si 0.939 3.061 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.106 0.894 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.072 0.928 44 H 0.403 0.597 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.110 0.890 48 H 0.131 0.869 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 16.414 -1.330 16.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.072 4.072 3 C -0.195 4.195 4 C -0.251 4.251 5 C -0.150 4.150 6 C 0.093 3.907 7 C -0.226 4.226 8 C -0.218 4.218 9 N -0.406 5.406 10 C 0.337 3.663 11 O -0.369 6.369 12 C -0.231 4.231 13 C -0.065 4.065 14 C -0.249 4.249 15 C -0.070 4.070 16 C -0.257 4.257 17 C 0.130 3.870 18 O -0.021 6.021 19 C -0.480 4.480 20 H 0.110 0.890 21 C -0.162 4.162 22 N -0.463 5.463 23 Si 0.763 3.237 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.123 0.877 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.091 0.909 44 H 0.249 0.751 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.128 0.872 48 H 0.149 0.851 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.664 15.555 -0.589 15.581 hybrid contribution -0.675 -0.360 -0.480 0.903 sum -0.010 15.196 -1.069 15.233 Atomic orbital electron populations 1.22383 0.95121 1.02397 1.02342 1.20552 0.95112 0.95598 0.95981 1.21929 1.00891 0.95183 1.01470 1.23091 1.01595 1.04586 0.95830 1.22233 1.02043 0.93462 0.97257 1.20108 0.87734 0.93405 0.89443 1.22361 1.00446 1.04638 0.95146 1.22429 0.95173 1.02760 1.01474 1.47356 1.38539 1.08509 1.46191 1.18276 0.83288 0.82558 0.82216 1.90869 1.51816 1.44301 1.49942 1.18938 1.05013 0.91436 1.07696 1.20856 0.94459 0.96441 0.94722 1.20445 1.03050 0.96151 1.05247 1.20882 0.96993 0.92571 0.96601 1.21164 1.01449 1.00030 1.03052 1.19268 0.89350 0.88171 0.90234 1.84172 1.45806 1.13165 1.58909 1.21438 1.18906 0.80802 1.26879 0.89029 1.25353 0.95973 0.99565 0.95307 1.70111 1.21037 1.32021 1.23163 0.85823 0.78960 0.80111 0.78773 1.19406 1.20184 1.19410 0.91427 0.91789 0.91886 0.92739 0.92683 0.92783 0.87657 0.93197 0.92621 0.91313 0.90762 0.88901 0.92614 0.93356 0.92000 0.92842 0.90935 0.75055 0.87337 0.87331 0.87211 0.85126 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 7.87 37.16 0.29 -1.37 16 2 C -0.07 -0.74 0.77 -154.51 -0.12 -0.86 16 3 C -0.14 -1.16 8.08 37.16 0.30 -0.86 16 4 C -0.19 -2.25 6.34 37.16 0.24 -2.02 16 5 C -0.11 -1.26 4.12 -26.73 -0.11 -1.37 16 6 C 0.18 2.64 0.66 -131.82 -0.09 2.55 16 7 C -0.17 -2.70 8.13 37.16 0.30 -2.40 16 8 C -0.16 -2.47 7.77 37.16 0.29 -2.18 16 9 N -0.74 -12.13 2.50 -48.64 -0.12 -12.25 16 10 C 0.55 11.88 7.17 -12.47 -0.09 11.79 16 11 O -0.49 -12.98 11.78 -16.57 -0.20 -13.17 16 12 C -0.23 -4.94 5.89 -104.81 -0.62 -5.56 16 13 C -0.05 -0.81 9.54 -39.20 -0.37 -1.18 16 14 C -0.23 -3.82 10.02 -39.61 -0.40 -4.22 16 15 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 16 C -0.24 -5.13 9.15 -39.44 -0.36 -5.49 16 17 C 0.19 4.71 6.65 -38.60 -0.26 4.45 16 18 O -0.12 -3.59 7.84 -21.06 -0.17 -3.75 16 19 C -0.40 -11.43 9.49 30.90 0.29 -11.14 16 20 H 0.09 2.35 5.22 -52.48 -0.27 2.08 16 21 C 0.05 1.28 5.49 -17.52 -0.10 1.18 16 22 N -0.83 -24.94 13.67 55.48 0.76 -24.18 16 23 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 26 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 27 H 0.07 0.73 7.10 -51.92 -0.37 0.36 16 28 H 0.06 0.54 7.59 -51.93 -0.39 0.14 16 29 H 0.06 0.66 4.49 -51.93 -0.23 0.42 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.11 1.49 3.43 -60.00 -0.21 1.29 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.05 0.63 7.68 -51.93 -0.40 0.23 16 36 H 0.07 0.72 7.34 -51.93 -0.38 0.34 16 37 H 0.07 0.75 7.24 -51.92 -0.38 0.38 16 38 H 0.09 1.91 5.75 -51.93 -0.30 1.61 16 39 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.05 0.72 8.01 -51.93 -0.42 0.30 16 41 H 0.06 0.96 5.85 -51.93 -0.30 0.66 16 42 H 0.05 0.67 7.45 -51.93 -0.39 0.28 16 43 H 0.07 1.35 7.14 -51.93 -0.37 0.98 16 44 H 0.40 5.64 1.06 -40.82 -0.04 5.60 16 45 H 0.11 1.54 4.58 -52.49 -0.24 1.30 16 46 H 0.11 1.46 8.06 -52.48 -0.42 1.03 16 47 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.13 2.78 5.66 -52.49 -0.30 2.48 16 49 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 364.53 15.07 5.49 5.49 Total: -1.00 -32.62 364.53 -7.53 -40.15 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -7.08 Total: 12.18 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.19 Total: -19.98 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: 0.64 Total: -36.44 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.36 Total: -16.92 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.62 -7.53 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194148751.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.805 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds