Wall clock time and date at job start Tue Mar 31 2020 12:17:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47170 * 2 1 4 4 C 1.53009 * 109.46849 * 65.00025 * 3 2 1 5 5 C 1.52998 * 109.47001 * 185.48729 * 4 3 2 6 6 C 1.53001 * 109.47565 * 184.99681 * 3 2 1 7 7 N 1.46503 * 109.46576 * 61.85097 * 6 3 2 8 8 C 1.46503 * 119.99938 * 263.53810 * 7 6 3 9 9 C 1.53001 * 109.46844 * 289.88860 * 8 7 6 10 10 C 1.34776 * 119.99925 * 83.53224 * 7 6 3 11 11 O 1.21583 * 120.00040 * 358.58245 * 10 7 6 12 12 C 1.47539 * 119.99780 * 178.57255 * 10 7 6 13 13 C 1.39668 * 120.19617 * 327.18470 * 12 10 7 14 14 C 1.37830 * 119.91533 * 180.02562 * 13 12 10 15 15 C 1.38578 * 120.32663 * 0.02562 * 14 13 12 16 16 C 1.38026 * 120.39771 * 0.02562 * 15 14 13 17 17 C 1.38829 * 120.07505 * 359.95281 * 16 15 14 18 18 O 1.35520 * 120.16303 * 180.02562 * 17 16 15 19 19 C 1.34810 * 116.99971 * 354.26196 * 18 17 16 20 20 H 1.08002 * 120.00041 * 5.07964 * 19 18 17 21 21 C 1.38696 * 120.00383 * 185.08625 * 19 18 17 22 22 N 1.31522 * 119.99891 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00374 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47059 * 60.00146 * 23 21 19 25 25 H 1.48503 * 109.47206 * 179.97438 * 23 21 19 26 26 H 1.48499 * 109.47028 * 299.99641 * 23 21 19 27 27 H 1.08996 * 109.46851 * 299.99399 * 1 2 3 28 28 H 1.09001 * 109.47330 * 59.99828 * 1 2 3 29 29 H 1.09001 * 109.47047 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46778 * 240.00086 * 2 1 3 31 31 H 1.08999 * 109.46940 * 120.00835 * 2 1 3 32 32 H 1.09002 * 109.47551 * 305.00763 * 3 2 1 33 33 H 1.08992 * 109.47029 * 305.49308 * 4 3 2 34 34 H 1.09000 * 109.46985 * 65.49524 * 4 3 2 35 35 H 1.08993 * 109.47718 * 304.29736 * 5 4 3 36 36 H 1.09001 * 109.46889 * 64.29649 * 5 4 3 37 37 H 1.08998 * 109.47184 * 184.28781 * 5 4 3 38 38 H 1.08997 * 109.47224 * 301.85841 * 6 3 2 39 39 H 1.09000 * 109.47401 * 181.85157 * 6 3 2 40 40 H 1.08993 * 109.47552 * 49.88704 * 8 7 6 41 41 H 1.08999 * 109.46990 * 169.89328 * 8 7 6 42 42 H 1.09003 * 109.47407 * 300.00033 * 9 8 7 43 43 H 1.08999 * 109.47529 * 59.99699 * 9 8 7 44 44 H 1.08998 * 109.47601 * 180.02562 * 9 8 7 45 45 H 1.07996 * 120.04078 * 0.27462 * 13 12 10 46 46 H 1.08004 * 119.83679 * 180.02562 * 14 13 12 47 47 H 1.07993 * 119.79825 * 179.97438 * 15 14 13 48 48 H 1.08001 * 119.96082 * 179.97438 * 16 15 14 49 49 H 0.96996 * 120.00287 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6352 2.1264 1.3075 5 6 2.0244 3.6050 1.2512 6 6 3.5649 1.4443 -0.1256 7 7 3.9507 0.8289 -1.3979 8 6 4.3288 -0.5857 -1.4425 9 6 5.6779 -0.7751 -0.7460 10 6 3.9576 1.5642 -2.5274 11 8 3.6189 2.7315 -2.4950 12 6 4.3764 0.9527 -3.8031 13 6 5.3547 -0.0440 -3.8167 14 6 5.7420 -0.6109 -5.0118 15 6 5.1656 -0.1966 -6.2020 16 6 4.1984 0.7880 -6.2041 17 6 3.7956 1.3701 -5.0098 18 8 2.8457 2.3367 -5.0097 19 6 2.4162 2.7728 -6.2109 20 1 2.7668 2.2972 -7.1150 21 6 1.5243 3.8322 -6.2857 22 7 1.0970 4.4112 -5.1847 23 14 0.9297 4.4370 -7.9501 24 1 0.2348 3.3324 -8.6588 25 1 -0.0107 5.5701 -7.7580 26 1 2.0918 4.8889 -8.7566 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5140 0.8899 32 1 1.6053 1.9816 -0.8417 33 1 0.5575 2.0393 1.4445 34 1 2.1475 1.6475 2.1418 35 1 3.0897 3.6926 1.0381 36 1 1.4547 4.1010 0.4653 37 1 1.8057 4.0750 2.2100 38 1 3.9980 0.8773 0.6983 39 1 3.9309 2.4705 -0.0926 40 1 3.5705 -1.1808 -0.9336 41 1 4.4075 -0.9083 -2.4807 42 1 6.4363 -0.1801 -1.2549 43 1 5.5993 -0.4525 0.2922 44 1 5.9595 -1.8276 -0.7794 45 1 5.8043 -0.3728 -2.8914 46 1 6.4983 -1.3818 -5.0207 47 1 5.4758 -0.6464 -7.1335 48 1 3.7542 1.1058 -7.1358 49 1 0.4735 5.1524 -5.2370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194193567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:22 Heat of formation + Delta-G solvation = -33.057800 kcal Electronic energy + Delta-G solvation = -28464.280481 eV Core-core repulsion = 24778.615789 eV Total energy + Delta-G solvation = -3685.664692 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.07231 -38.55923 -36.83138 -36.39878 -35.01282 -32.32281 -31.63017 -31.00167 -30.19102 -28.90031 -27.68747 -25.40842 -24.46603 -23.46404 -22.58270 -21.87417 -21.50096 -19.89822 -18.81380 -18.09663 -17.04279 -16.30928 -15.96546 -15.09717 -14.91605 -14.52087 -14.37235 -14.24327 -14.21355 -13.88206 -13.75503 -13.50410 -13.26157 -12.95698 -12.69084 -12.53110 -12.43821 -12.15031 -11.99029 -11.74362 -11.69043 -11.53090 -11.37918 -11.19793 -11.05945 -11.04147 -10.98788 -10.78426 -10.57420 -10.42704 -10.38512 -10.18479 -10.09197 -9.53725 -8.86770 -8.81868 -8.17426 -8.08725 -7.29377 -6.43113 -4.03135 1.78153 2.31214 3.12322 3.14707 3.17003 3.50226 3.71376 3.94944 4.56654 4.91030 5.01426 5.02081 5.09492 5.11754 5.18716 5.26030 5.33796 5.41091 5.48806 5.51257 5.56525 5.61558 5.63526 5.75206 5.81251 5.86725 5.90637 5.93207 5.98531 6.02147 6.04766 6.08479 6.15744 6.24219 6.28525 6.33242 6.37571 6.50787 6.55665 6.59118 6.67548 6.73998 6.94896 7.06006 7.12421 7.27176 7.31163 7.70916 7.92884 8.04904 8.97298 9.08401 9.68199 10.71377 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010123 B = 0.005226 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.447099 B = 5357.038511 C = 7268.994715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.108 4.108 4 C -0.113 4.113 5 C -0.155 4.155 6 C 0.128 3.872 7 N -0.617 5.617 8 C 0.077 3.923 9 C -0.173 4.173 10 C 0.564 3.436 11 O -0.505 6.505 12 C -0.222 4.222 13 C -0.059 4.059 14 C -0.231 4.231 15 C -0.053 4.053 16 C -0.238 4.238 17 C 0.190 3.810 18 O -0.136 6.136 19 C -0.401 4.401 20 H 0.093 0.907 21 C 0.045 3.955 22 N -0.838 5.838 23 Si 0.940 3.060 24 H -0.269 1.269 25 H -0.277 1.277 26 H -0.269 1.269 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.058 0.942 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.109 0.891 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.064 0.936 45 H 0.133 0.867 46 H 0.109 0.891 47 H 0.109 0.891 48 H 0.131 0.869 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.419 -10.507 9.567 14.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.128 4.128 4 C -0.151 4.151 5 C -0.212 4.212 6 C 0.005 3.995 7 N -0.352 5.352 8 C -0.046 4.046 9 C -0.232 4.232 10 C 0.354 3.646 11 O -0.379 6.379 12 C -0.227 4.227 13 C -0.077 4.077 14 C -0.250 4.250 15 C -0.071 4.071 16 C -0.257 4.257 17 C 0.131 3.869 18 O -0.035 6.035 19 C -0.477 4.477 20 H 0.110 0.890 21 C -0.162 4.162 22 N -0.469 5.469 23 Si 0.764 3.236 24 H -0.194 1.194 25 H -0.202 1.202 26 H -0.194 1.194 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.097 0.903 40 H 0.085 0.915 41 H 0.126 0.874 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.151 0.849 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.148 0.852 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.909 -9.483 9.838 14.212 hybrid contribution -0.252 0.132 -0.929 0.971 sum 3.657 -9.351 8.909 13.423 Atomic orbital electron populations 1.21816 0.96209 1.00993 1.01985 1.21609 0.95758 0.96659 1.01466 1.21635 0.96152 0.96152 0.98828 1.21526 1.01052 0.95758 0.96785 1.21825 1.02109 0.96114 1.01153 1.21382 0.94199 0.99026 0.84888 1.47788 1.69375 1.10310 1.07718 1.22253 0.95726 0.82671 1.03978 1.22252 0.97983 1.01780 1.01144 1.18244 0.77420 0.85974 0.82972 1.90862 1.45828 1.16028 1.85153 1.18823 1.06377 1.05974 0.91517 1.21368 0.94794 0.93248 0.98329 1.20500 1.05944 1.05948 0.92600 1.20895 0.94255 0.94705 0.97289 1.21138 1.03843 1.02383 0.98357 1.19231 0.87378 0.88391 0.91916 1.84072 1.43766 1.43621 1.32080 1.21379 1.27079 1.16353 0.82911 0.88989 1.25352 0.96268 0.95363 0.99267 1.70093 1.28631 1.20986 1.27228 0.85808 0.78908 0.78694 0.80168 1.19427 1.20183 1.19370 0.92817 0.92499 0.93305 0.91491 0.92733 0.89779 0.91840 0.92589 0.92446 0.92241 0.93402 0.91410 0.90349 0.91457 0.87365 0.91972 0.92389 0.91665 0.84940 0.87285 0.87266 0.85156 0.91863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.67 37.16 0.36 -1.58 16 2 C -0.12 -1.54 4.77 -26.73 -0.13 -1.67 16 3 C -0.11 -1.61 2.03 -90.62 -0.18 -1.80 16 4 C -0.11 -1.42 5.27 -26.73 -0.14 -1.56 16 5 C -0.15 -2.08 9.77 37.16 0.36 -1.71 16 6 C 0.13 1.91 4.50 -4.04 -0.02 1.89 16 7 N -0.62 -10.32 2.18 -174.92 -0.38 -10.70 16 8 C 0.08 0.99 5.05 -4.04 -0.02 0.97 16 9 C -0.17 -1.78 9.22 37.16 0.34 -1.43 16 10 C 0.56 12.51 7.25 -12.47 -0.09 12.42 16 11 O -0.50 -13.67 15.52 -13.14 -0.20 -13.88 16 12 C -0.22 -4.87 5.43 -104.81 -0.57 -5.44 16 13 C -0.06 -1.03 7.36 -39.20 -0.29 -1.32 16 14 C -0.23 -3.78 10.02 -39.61 -0.40 -4.18 16 15 C -0.05 -0.94 10.03 -39.53 -0.40 -1.33 16 16 C -0.24 -5.14 9.16 -39.44 -0.36 -5.50 16 17 C 0.19 4.73 6.63 -38.60 -0.26 4.47 16 18 O -0.14 -4.02 8.33 -17.62 -0.15 -4.17 16 19 C -0.40 -11.41 9.49 30.90 0.29 -11.11 16 20 H 0.09 2.38 5.21 -52.49 -0.27 2.10 16 21 C 0.04 1.25 5.49 -17.51 -0.10 1.16 16 22 N -0.84 -25.28 13.67 55.48 0.76 -24.52 16 23 Si 0.94 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 26 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 27 H 0.05 0.62 6.45 -51.93 -0.34 0.28 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.96 5.63 -51.93 -0.29 0.67 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.66 8.11 -51.93 -0.42 1.23 16 33 H 0.06 0.77 6.32 -51.93 -0.33 0.44 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.06 0.79 6.35 -51.93 -0.33 0.46 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.81 7.05 -51.93 -0.37 0.45 16 39 H 0.08 1.31 5.91 -51.93 -0.31 1.01 16 40 H 0.07 0.78 6.02 -51.93 -0.31 0.47 16 41 H 0.11 1.52 4.04 -51.93 -0.21 1.31 16 42 H 0.06 0.69 6.92 -51.93 -0.36 0.33 16 43 H 0.06 0.56 7.20 -51.93 -0.37 0.18 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.13 1.88 3.49 -52.49 -0.18 1.70 16 46 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 47 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 48 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 49 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -33.50 377.47 -8.22 -41.72 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -7.33 Total: 7.92 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: -1.59 Total: -17.71 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.38 Total: -35.23 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.35 Total: -18.05 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.50 -8.22 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194193567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.665 kcal (2) G-P(sol) polarization free energy of solvation -33.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds