Wall clock time and date at job start Tue Mar 31 2020 12:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 C 1.53001 * 109.47377 * 305.79422 * 3 2 1 5 5 C 1.53004 * 109.47293 * 294.29242 * 4 3 2 6 6 C 1.53002 * 109.47080 * 65.79395 * 3 2 1 7 7 N 1.46899 * 109.46682 * 63.39186 * 6 3 2 8 8 C 1.46901 * 110.99818 * 199.18705 * 7 6 3 9 9 C 1.50703 * 109.47381 * 63.24911 * 8 7 6 10 10 H 1.08001 * 119.99418 * 5.30791 * 9 8 7 11 11 C 1.37870 * 120.00395 * 185.31103 * 9 8 7 12 12 N 1.31521 * 119.99599 * 354.91934 * 11 9 8 13 13 Si 1.86801 * 120.00274 * 174.92153 * 11 9 8 14 14 H 1.48496 * 109.47011 * 94.99670 * 13 11 9 15 15 H 1.48501 * 109.47030 * 214.99553 * 13 11 9 16 16 H 1.48498 * 109.46668 * 334.99551 * 13 11 9 17 17 C 1.46905 * 111.00280 * 75.23323 * 7 6 3 18 18 C 1.50700 * 109.46922 * 189.99788 * 17 7 6 19 19 C 1.38396 * 119.92077 * 270.24797 * 18 17 7 20 20 C 1.38351 * 120.29538 * 180.29955 * 19 18 17 21 21 C 1.37963 * 120.15143 * 359.45358 * 20 19 18 22 22 C 1.39610 * 119.84708 * 0.27119 * 21 20 19 23 23 C 1.47731 * 120.14735 * 179.97438 * 22 21 20 24 24 O 1.21470 * 119.99839 * 180.02562 * 23 22 21 25 25 O 1.34715 * 119.99913 * 0.02562 * 23 22 21 26 26 C 1.37919 * 119.92301 * 90.00200 * 18 17 7 27 27 H 1.08994 * 109.47683 * 305.44119 * 1 2 3 28 28 H 1.09004 * 109.47194 * 65.44483 * 1 2 3 29 29 H 1.09005 * 109.47005 * 185.43865 * 1 2 3 30 30 H 1.09000 * 109.47131 * 240.00629 * 2 1 3 31 31 H 1.08997 * 109.47364 * 120.00051 * 2 1 3 32 32 H 1.09004 * 109.47245 * 185.79596 * 3 2 1 33 33 H 1.09003 * 109.46804 * 54.28500 * 4 3 2 34 34 H 1.08996 * 109.47426 * 174.28887 * 4 3 2 35 35 H 1.08998 * 109.47169 * 185.31982 * 5 4 3 36 36 H 1.09004 * 109.46973 * 305.31651 * 5 4 3 37 37 H 1.08997 * 109.47033 * 65.31554 * 5 4 3 38 38 H 1.08995 * 109.46922 * 303.39022 * 6 3 2 39 39 H 1.08999 * 109.46835 * 183.38818 * 6 3 2 40 40 H 1.09001 * 109.47314 * 183.25639 * 8 7 6 41 41 H 1.09011 * 109.46973 * 303.25203 * 8 7 6 42 42 H 0.97003 * 119.99327 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46989 * 69.99732 * 17 7 6 44 44 H 1.08998 * 109.46605 * 309.99709 * 17 7 6 45 45 H 1.07995 * 119.85417 * 0.03077 * 19 18 17 46 46 H 1.07997 * 119.91912 * 179.72152 * 20 19 18 47 47 H 1.08004 * 120.07373 * 180.24870 * 21 20 19 48 48 H 0.96697 * 116.99642 * 179.97438 * 25 23 22 49 49 H 1.07994 * 120.08157 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4145 2.2046 -1.1700 5 6 1.9159 1.6143 -2.4895 6 6 1.6523 2.1205 1.3157 7 7 2.3182 1.4378 2.4330 8 6 1.6491 1.7362 3.7063 9 6 0.2405 1.2016 3.6709 10 1 -0.0942 0.6173 2.8265 11 6 -0.6209 1.4585 4.7163 12 7 -0.1856 2.0836 5.7885 13 14 -2.4060 0.9188 4.6100 14 1 -2.5640 -0.4020 5.2701 15 1 -3.2669 1.9188 5.2913 16 1 -2.8062 0.8106 3.1840 17 6 3.7430 1.7908 2.4917 18 6 4.4418 0.8958 3.4824 19 6 4.5263 1.2710 4.8119 20 6 5.1715 0.4581 5.7268 21 6 5.7255 -0.7384 5.3210 22 6 5.6389 -1.1257 3.9825 23 6 6.2303 -2.4053 3.5406 24 8 6.1538 -2.7393 2.3752 25 8 6.8544 -3.2016 4.4300 26 6 4.9913 -0.2978 3.0631 27 1 -0.3634 0.5959 0.8372 28 1 -0.3634 0.4271 -0.9348 29 1 -0.3633 -1.0231 0.0974 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.1250 1.4443 -0.1038 33 1 0.3291 2.1169 -1.1220 34 1 1.6970 3.2557 -1.1116 35 1 1.5460 2.2152 -3.3203 36 1 3.0059 1.6157 -2.4972 37 1 1.5531 0.5915 -2.5911 38 1 0.5718 2.0654 1.4482 39 1 1.9625 3.1651 1.2913 40 1 2.1960 1.2655 4.5232 41 1 1.6244 2.8152 3.8596 42 1 -0.7916 2.2640 6.5242 43 1 3.8473 2.8299 2.8041 44 1 4.1903 1.6610 1.5062 45 1 4.0904 2.2045 5.1357 46 1 5.2377 0.7590 6.7619 47 1 6.2253 -1.3739 6.0371 48 1 7.2253 -4.0290 4.0939 49 1 4.9208 -0.5914 2.0263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263489413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:32 Heat of formation + Delta-G solvation = -83.437638 kcal Electronic energy + Delta-G solvation = -27759.206177 eV Core-core repulsion = 24071.356851 eV Total energy + Delta-G solvation = -3687.849326 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31204 -38.93424 -37.77316 -36.04844 -35.31706 -32.68861 -31.43867 -30.98873 -30.64266 -28.18833 -27.03040 -24.72651 -24.60569 -23.43607 -22.87208 -21.73027 -20.85365 -20.01984 -18.39216 -17.85105 -17.10094 -16.45185 -15.75830 -15.55845 -15.41214 -15.01879 -14.81937 -14.65182 -14.30340 -14.13426 -13.67554 -13.25208 -13.05545 -12.80246 -12.57481 -12.45492 -12.23686 -11.95196 -11.93533 -11.61185 -11.53614 -11.46331 -11.41833 -11.20718 -10.90328 -10.79562 -10.77239 -10.65598 -10.50192 -10.28708 -10.00752 -9.95617 -9.83291 -9.52554 -9.19583 -8.77157 -8.53837 -8.38662 -7.22836 -6.04559 -4.03299 0.90762 1.60372 2.68929 3.05926 3.30235 3.37339 3.40571 3.97779 4.42433 4.88043 4.98182 5.11881 5.15246 5.23983 5.31828 5.33680 5.38208 5.46068 5.55630 5.59154 5.64304 5.75927 5.81896 5.87714 5.99245 6.08128 6.09439 6.15470 6.19420 6.21198 6.24196 6.30135 6.32300 6.40315 6.50541 6.52358 6.59613 6.62605 6.71604 6.77014 6.86235 7.03374 7.08575 7.09773 7.31806 7.34644 7.84124 7.92326 8.08343 8.19563 8.54608 9.05050 9.60254 11.06564 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004995 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.572398 B = 5604.347197 C = 7586.212589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.106 4.106 3 C -0.082 4.082 4 C -0.123 4.123 5 C -0.148 4.148 6 C 0.064 3.936 7 N -0.527 5.527 8 C 0.188 3.812 9 C -0.505 4.505 10 H 0.068 0.932 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.890 3.110 14 H -0.282 1.282 15 H -0.288 1.288 16 H -0.272 1.272 17 C 0.089 3.911 18 C -0.072 4.072 19 C -0.058 4.058 20 C -0.135 4.135 21 C -0.068 4.068 22 C -0.141 4.141 23 C 0.530 3.470 24 O -0.518 6.518 25 O -0.515 6.515 26 C -0.034 4.034 27 H 0.071 0.929 28 H 0.043 0.957 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.078 0.922 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.054 0.946 35 H 0.045 0.955 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.016 0.984 40 H 0.037 0.963 41 H -0.011 1.011 42 H 0.260 0.740 43 H 0.034 0.966 44 H 0.072 0.928 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.131 0.869 48 H 0.410 0.590 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.254 -2.809 -6.152 13.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.143 4.143 3 C -0.101 4.101 4 C -0.161 4.161 5 C -0.206 4.206 6 C -0.064 4.064 7 N -0.251 5.251 8 C 0.063 3.937 9 C -0.543 4.543 10 H 0.086 0.914 11 C -0.144 4.144 12 N -0.537 5.537 13 Si 0.718 3.282 14 H -0.208 1.208 15 H -0.214 1.214 16 H -0.197 1.197 17 C -0.039 4.039 18 C -0.073 4.073 19 C -0.077 4.077 20 C -0.153 4.153 21 C -0.086 4.086 22 C -0.142 4.142 23 C 0.375 3.625 24 O -0.408 6.408 25 O -0.326 6.326 26 C -0.052 4.052 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.035 0.965 40 H 0.055 0.945 41 H 0.007 0.993 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.091 0.909 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.268 0.732 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.956 -2.957 -6.225 12.943 hybrid contribution -0.795 0.016 0.141 0.807 sum 10.161 -2.941 -6.084 12.203 Atomic orbital electron populations 1.21904 0.96571 1.01168 1.01569 1.21352 0.95669 0.95920 1.01376 1.21204 0.99084 0.95793 0.93999 1.21618 1.01169 0.98962 0.94368 1.21767 1.00766 1.00944 0.97083 1.22124 1.01303 0.93387 0.89565 1.62107 0.98976 1.57691 1.06291 1.19844 0.94111 0.94387 0.85375 1.21212 0.95730 1.32614 1.04778 0.91436 1.24943 0.98653 0.95506 0.95294 1.69961 1.35313 1.42351 1.06089 0.86602 0.85058 0.78273 0.78254 1.20814 1.21357 1.19704 1.21048 0.91325 0.94832 0.96659 1.19765 0.97384 0.95415 0.94723 1.21483 0.93912 0.99732 0.92554 1.21093 0.99451 0.94816 0.99986 1.21327 0.96975 0.96017 0.94289 1.18919 1.06429 0.93479 0.95347 1.21027 0.74507 0.84036 0.82923 1.90872 1.56746 1.73865 1.19298 1.84576 1.68556 1.35321 1.44184 1.21033 0.92816 0.91866 0.99524 0.91031 0.93810 0.93877 0.93829 0.90339 0.92282 0.91480 0.92768 0.93539 0.93170 0.92641 0.88863 0.96535 0.94545 0.99288 0.93067 0.94807 0.90923 0.85231 0.85385 0.85070 0.73206 0.84809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.10 37.16 0.34 -2.16 16 2 C -0.11 -1.67 5.29 -26.73 -0.14 -1.81 16 3 C -0.08 -1.24 2.20 -90.62 -0.20 -1.44 16 4 C -0.12 -1.63 5.07 -26.73 -0.14 -1.76 16 5 C -0.15 -1.70 9.55 37.16 0.36 -1.34 16 6 C 0.06 1.17 4.08 -3.82 -0.02 1.15 16 7 N -0.53 -10.42 3.73 -237.51 -0.89 -11.30 16 8 C 0.19 4.54 4.45 -4.97 -0.02 4.52 16 9 C -0.50 -13.42 8.08 -34.44 -0.28 -13.69 16 10 H 0.07 1.78 5.93 -52.49 -0.31 1.47 16 11 C 0.06 1.57 5.45 -17.82 -0.10 1.47 16 12 N -0.90 -25.74 13.29 55.43 0.74 -25.00 16 13 Si 0.89 21.23 29.54 -169.99 -5.02 16.20 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.09 1.51 4.94 -4.97 -0.02 1.48 16 18 C -0.07 -1.20 4.90 -104.68 -0.51 -1.71 16 19 C -0.06 -0.94 7.86 -39.48 -0.31 -1.25 16 20 C -0.14 -1.92 10.03 -39.64 -0.40 -2.32 16 21 C -0.07 -0.93 9.62 -39.17 -0.38 -1.30 16 22 C -0.14 -2.12 5.87 -104.98 -0.62 -2.74 16 23 C 0.53 7.58 8.27 34.61 0.29 7.86 16 24 O -0.52 -8.71 17.13 -19.24 -0.33 -9.04 16 25 O -0.51 -5.45 12.68 -40.53 -0.51 -5.97 16 26 C -0.03 -0.54 9.24 -39.17 -0.36 -0.90 16 27 H 0.07 1.33 4.88 -51.93 -0.25 1.08 16 28 H 0.04 0.62 6.54 -51.93 -0.34 0.28 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.04 0.62 7.00 -51.93 -0.36 0.26 16 31 H 0.08 1.44 7.54 -51.93 -0.39 1.05 16 32 H 0.06 0.87 6.67 -51.93 -0.35 0.53 16 33 H 0.07 0.91 6.13 -51.93 -0.32 0.59 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.64 6.99 -51.93 -0.36 0.28 16 38 H 0.09 1.91 4.73 -51.93 -0.25 1.67 16 39 H 0.02 0.30 8.01 -51.93 -0.42 -0.12 16 40 H 0.04 0.94 5.64 -51.93 -0.29 0.64 16 41 H -0.01 -0.28 8.14 -51.92 -0.42 -0.70 16 42 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 43 H 0.03 0.57 8.07 -51.93 -0.42 0.15 16 44 H 0.07 1.10 6.49 -51.93 -0.34 0.76 16 45 H 0.13 2.12 7.90 -52.49 -0.41 1.71 16 46 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.13 1.50 7.61 -52.48 -0.40 1.10 16 48 H 0.41 2.38 9.11 45.56 0.42 2.79 16 49 H 0.13 2.15 7.65 -52.49 -0.40 1.75 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -30.53 385.67 -9.58 -40.11 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.87 Total: 5.13 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: -2.51 Total: -15.95 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: -0.15 Total: -36.30 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.84 Total: -15.00 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.53 -9.58 -40.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263489413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.330 kcal (2) G-P(sol) polarization free energy of solvation -30.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds