Wall clock time and date at job start Tue Mar 31 2020 12:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46942 * 2 1 4 4 C 1.53001 * 109.47377 * 305.79422 * 3 2 1 5 5 C 1.53004 * 109.47293 * 294.29242 * 4 3 2 6 6 C 1.53002 * 109.47080 * 65.79395 * 3 2 1 7 7 N 1.46899 * 109.46682 * 63.39186 * 6 3 2 8 8 C 1.46901 * 110.99818 * 199.18705 * 7 6 3 9 9 C 1.50703 * 109.47381 * 63.24911 * 8 7 6 10 10 H 1.08001 * 119.99418 * 5.30791 * 9 8 7 11 11 C 1.37870 * 120.00395 * 185.31103 * 9 8 7 12 12 N 1.31521 * 119.99599 * 354.91934 * 11 9 8 13 13 Si 1.86801 * 120.00274 * 174.92153 * 11 9 8 14 14 H 1.48496 * 109.47011 * 94.99670 * 13 11 9 15 15 H 1.48501 * 109.47030 * 214.99553 * 13 11 9 16 16 H 1.48498 * 109.46668 * 334.99551 * 13 11 9 17 17 C 1.46905 * 111.00280 * 75.23323 * 7 6 3 18 18 C 1.50700 * 109.46922 * 189.99788 * 17 7 6 19 19 C 1.38396 * 119.92077 * 270.24797 * 18 17 7 20 20 C 1.38351 * 120.29538 * 180.29955 * 19 18 17 21 21 C 1.37963 * 120.15143 * 359.45358 * 20 19 18 22 22 C 1.39610 * 119.84708 * 0.27119 * 21 20 19 23 23 C 1.47731 * 120.14735 * 179.97438 * 22 21 20 24 24 O 1.21470 * 119.99839 * 180.02562 * 23 22 21 25 25 O 1.34715 * 119.99913 * 0.02562 * 23 22 21 26 26 C 1.37919 * 119.92301 * 90.00200 * 18 17 7 27 27 H 1.08994 * 109.47683 * 305.44119 * 1 2 3 28 28 H 1.09004 * 109.47194 * 65.44483 * 1 2 3 29 29 H 1.09005 * 109.47005 * 185.43865 * 1 2 3 30 30 H 1.09000 * 109.47131 * 240.00629 * 2 1 3 31 31 H 1.08997 * 109.47364 * 120.00051 * 2 1 3 32 32 H 1.09004 * 109.47245 * 185.79596 * 3 2 1 33 33 H 1.09003 * 109.46804 * 54.28500 * 4 3 2 34 34 H 1.08996 * 109.47426 * 174.28887 * 4 3 2 35 35 H 1.08998 * 109.47169 * 185.31982 * 5 4 3 36 36 H 1.09004 * 109.46973 * 305.31651 * 5 4 3 37 37 H 1.08997 * 109.47033 * 65.31554 * 5 4 3 38 38 H 1.08995 * 109.46922 * 303.39022 * 6 3 2 39 39 H 1.08999 * 109.46835 * 183.38818 * 6 3 2 40 40 H 1.09001 * 109.47314 * 183.25639 * 8 7 6 41 41 H 1.09011 * 109.46973 * 303.25203 * 8 7 6 42 42 H 0.97003 * 119.99327 * 180.02562 * 12 11 9 43 43 H 1.09004 * 109.46989 * 69.99732 * 17 7 6 44 44 H 1.08998 * 109.46605 * 309.99709 * 17 7 6 45 45 H 1.07995 * 119.85417 * 0.03077 * 19 18 17 46 46 H 1.07997 * 119.91912 * 179.72152 * 20 19 18 47 47 H 1.08004 * 120.07373 * 180.24870 * 21 20 19 48 48 H 0.96697 * 116.99642 * 179.97438 * 25 23 22 49 49 H 1.07994 * 120.08157 * 359.97438 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4145 2.2046 -1.1700 5 6 1.9159 1.6143 -2.4895 6 6 1.6523 2.1205 1.3157 7 7 2.3182 1.4378 2.4330 8 6 1.6491 1.7362 3.7063 9 6 0.2405 1.2016 3.6709 10 1 -0.0942 0.6173 2.8265 11 6 -0.6209 1.4585 4.7163 12 7 -0.1856 2.0836 5.7885 13 14 -2.4060 0.9188 4.6100 14 1 -2.5640 -0.4020 5.2701 15 1 -3.2669 1.9188 5.2913 16 1 -2.8062 0.8106 3.1840 17 6 3.7430 1.7908 2.4917 18 6 4.4418 0.8958 3.4824 19 6 4.5263 1.2710 4.8119 20 6 5.1715 0.4581 5.7268 21 6 5.7255 -0.7384 5.3210 22 6 5.6389 -1.1257 3.9825 23 6 6.2303 -2.4053 3.5406 24 8 6.1538 -2.7393 2.3752 25 8 6.8544 -3.2016 4.4300 26 6 4.9913 -0.2978 3.0631 27 1 -0.3634 0.5959 0.8372 28 1 -0.3634 0.4271 -0.9348 29 1 -0.3633 -1.0231 0.0974 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.1250 1.4443 -0.1038 33 1 0.3291 2.1169 -1.1220 34 1 1.6970 3.2557 -1.1116 35 1 1.5460 2.2152 -3.3203 36 1 3.0059 1.6157 -2.4972 37 1 1.5531 0.5915 -2.5911 38 1 0.5718 2.0654 1.4482 39 1 1.9625 3.1651 1.2913 40 1 2.1960 1.2655 4.5232 41 1 1.6244 2.8152 3.8596 42 1 -0.7916 2.2640 6.5242 43 1 3.8473 2.8299 2.8041 44 1 4.1903 1.6610 1.5062 45 1 4.0904 2.2045 5.1357 46 1 5.2377 0.7590 6.7619 47 1 6.2253 -1.3739 6.0371 48 1 7.2253 -4.0290 4.0939 49 1 4.9208 -0.5914 2.0263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263489413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:31 Heat of formation + Delta-G solvation = -100.220099 kcal Electronic energy + Delta-G solvation = -27759.933919 eV Core-core repulsion = 24071.356851 eV Total energy + Delta-G solvation = -3688.577068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.43329 -40.20751 -39.06648 -37.07324 -36.73716 -34.66586 -32.75192 -32.19567 -31.81741 -29.84848 -28.53244 -26.23046 -25.78794 -24.95594 -24.20971 -22.97101 -22.08280 -21.46443 -19.67569 -18.92437 -18.49490 -18.23887 -16.95805 -16.84854 -16.64364 -16.47034 -16.24374 -16.05029 -15.75422 -15.55796 -14.96461 -14.58876 -14.31515 -14.15307 -13.83425 -13.72205 -13.60490 -13.54850 -13.27362 -13.12007 -12.77712 -12.70526 -12.63109 -12.60756 -12.56956 -12.43064 -12.08732 -11.98985 -11.89929 -11.69813 -11.60163 -11.28397 -11.16023 -11.01918 -10.93521 -10.52128 -9.96874 -9.77284 -8.88270 -8.15571 -6.20293 -0.27781 0.40529 1.39414 1.40750 1.51177 1.54322 2.06813 2.41957 2.76814 3.18348 3.46375 3.77928 3.93273 4.03738 4.05560 4.12904 4.20989 4.21372 4.31669 4.38329 4.48075 4.57809 4.65463 4.67672 4.73208 4.80366 4.88710 4.90320 4.98847 5.00779 5.04449 5.09350 5.16689 5.22832 5.26863 5.29446 5.40063 5.41308 5.45308 5.49123 5.53524 5.56338 5.62737 5.68006 5.75113 5.84125 5.89891 6.16500 6.43610 6.72116 6.96942 6.98609 7.47351 8.95529 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008360 B = 0.004995 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3348.572398 B = 5604.347197 C = 7586.212589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 C -0.072 4.072 4 C -0.120 4.120 5 C -0.144 4.144 6 C 0.066 3.934 7 N -0.528 5.528 8 C 0.206 3.794 9 C -0.512 4.512 10 H 0.066 0.934 11 C 0.007 3.993 12 N -0.930 5.930 13 Si 0.950 3.050 14 H -0.279 1.279 15 H -0.284 1.284 16 H -0.264 1.264 17 C 0.092 3.908 18 C -0.087 4.087 19 C -0.076 4.076 20 C -0.134 4.134 21 C -0.057 4.057 22 C -0.151 4.151 23 C 0.538 3.462 24 O -0.548 6.548 25 O -0.501 6.501 26 C -0.043 4.043 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.067 0.933 39 H 0.016 0.984 40 H 0.020 0.980 41 H -0.043 1.043 42 H 0.261 0.739 43 H 0.031 0.969 44 H 0.093 0.907 45 H 0.117 0.883 46 H 0.153 0.847 47 H 0.161 0.839 48 H 0.433 0.567 49 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.962 -4.039 -7.058 14.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.138 4.138 3 C -0.091 4.091 4 C -0.158 4.158 5 C -0.201 4.201 6 C -0.061 4.061 7 N -0.252 5.252 8 C 0.080 3.920 9 C -0.551 4.551 10 H 0.084 0.916 11 C -0.191 4.191 12 N -0.572 5.572 13 Si 0.776 3.224 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.188 1.188 17 C -0.036 4.036 18 C -0.088 4.088 19 C -0.095 4.095 20 C -0.152 4.152 21 C -0.075 4.075 22 C -0.152 4.152 23 C 0.384 3.616 24 O -0.441 6.441 25 O -0.315 6.315 26 C -0.062 4.062 27 H 0.059 0.941 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.034 0.966 40 H 0.038 0.962 41 H -0.025 1.025 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.111 0.889 45 H 0.135 0.865 46 H 0.170 0.830 47 H 0.179 0.821 48 H 0.295 0.705 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 11.686 -4.209 -7.140 14.327 hybrid contribution -0.922 0.364 0.464 1.095 sum 10.764 -3.846 -6.675 13.237 Atomic orbital electron populations 1.21845 0.96768 1.00784 1.01351 1.21286 0.95427 0.96159 1.00963 1.21130 0.99666 0.95358 0.92928 1.21584 1.00720 0.99061 0.94419 1.21730 1.01129 1.01055 0.96194 1.22121 0.99649 0.93728 0.90641 1.62046 1.00393 1.58039 1.04726 1.19463 0.93498 0.91861 0.87200 1.21525 0.96963 1.32126 1.04462 0.91632 1.25708 1.02570 0.95752 0.95035 1.70075 1.36623 1.43684 1.06770 0.85653 0.80393 0.77806 0.78554 1.20533 1.20980 1.18834 1.21087 0.89521 0.94889 0.98089 1.19744 0.98233 0.95916 0.94901 1.21537 0.94918 0.99977 0.93019 1.21386 0.98441 0.94591 1.00776 1.21629 0.95942 0.95794 0.94149 1.19126 1.06256 0.93953 0.95837 1.20816 0.74183 0.83954 0.82651 1.90864 1.58058 1.74548 1.20601 1.84510 1.67696 1.36224 1.43021 1.21029 0.93414 0.91961 0.99747 0.94073 0.91669 0.93759 0.91668 0.93199 0.91435 0.91982 0.92322 0.92040 0.92614 0.92561 0.91460 0.96609 0.96165 1.02484 0.93044 0.95087 0.88929 0.86508 0.82959 0.82142 0.70498 0.85209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.10 71.98 0.65 -4.12 16 2 C -0.10 -3.12 5.29 30.59 0.16 -2.96 16 3 C -0.07 -2.13 2.20 -10.79 -0.02 -2.15 16 4 C -0.12 -2.97 5.07 30.60 0.16 -2.81 16 5 C -0.14 -2.90 9.55 71.98 0.69 -2.21 16 6 C 0.07 2.48 4.08 86.30 0.35 2.83 16 7 N -0.53 -21.66 3.73 -905.33 -3.38 -25.03 16 8 C 0.21 10.45 4.45 85.56 0.38 10.83 16 9 C -0.51 -28.13 8.08 25.60 0.21 -27.92 16 10 H 0.07 3.56 5.93 -2.91 -0.02 3.55 16 11 C 0.01 0.41 5.45 84.65 0.46 0.87 16 12 N -0.93 -54.78 13.29 21.45 0.29 -54.50 16 13 Si 0.95 44.16 29.54 68.60 2.03 46.18 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 17 C 0.09 3.17 4.94 85.56 0.42 3.60 16 18 C -0.09 -2.97 4.90 -19.90 -0.10 -3.06 16 19 C -0.08 -2.50 7.86 22.33 0.18 -2.33 16 20 C -0.13 -3.67 10.03 22.23 0.22 -3.45 16 21 C -0.06 -1.45 9.62 22.54 0.22 -1.23 16 22 C -0.15 -4.38 5.87 -20.10 -0.12 -4.50 16 23 C 0.54 14.48 8.27 70.33 0.58 15.06 16 24 O -0.55 -17.88 17.13 19.93 0.34 -17.54 16 25 O -0.50 -9.14 12.68 -56.25 -0.71 -9.85 16 26 C -0.04 -1.38 9.24 22.53 0.21 -1.17 16 27 H 0.04 1.55 4.88 -2.39 -0.01 1.54 16 28 H 0.06 1.76 6.54 -2.38 -0.02 1.74 16 29 H 0.04 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.06 1.74 7.00 -2.39 -0.02 1.73 16 31 H 0.05 1.84 7.54 -2.39 -0.02 1.82 16 32 H 0.07 1.90 6.67 -2.39 -0.02 1.88 16 33 H 0.06 1.60 6.13 -2.39 -0.01 1.59 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.06 1.13 6.99 -2.39 -0.02 1.11 16 38 H 0.07 2.87 4.73 -2.39 -0.01 2.86 16 39 H 0.02 0.58 8.01 -2.39 -0.02 0.56 16 40 H 0.02 1.09 5.64 -2.39 -0.01 1.08 16 41 H -0.04 -2.38 8.14 -2.38 -0.02 -2.40 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.03 1.08 8.07 -2.38 -0.02 1.07 16 44 H 0.09 2.79 6.49 -2.39 -0.02 2.78 16 45 H 0.12 4.07 7.90 -2.91 -0.02 4.05 16 46 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 47 H 0.16 3.11 7.61 -2.91 -0.02 3.09 16 48 H 0.43 3.66 9.11 -74.06 -0.67 2.98 16 49 H 0.13 4.22 7.65 -2.91 -0.02 4.19 16 Total: -1.00 -67.24 385.67 3.49 -63.75 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 0.28 Total: 21.72 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.65 Total: -24.73 kcal Atomic # 7 Polarization: -76.44 SS G_CDS: -3.09 Total: -79.53 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.37 Total: -27.39 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -67.24 3.49 -63.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263489413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.471 kcal (2) G-P(sol) polarization free energy of solvation -67.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds