Wall clock time and date at job start Tue Mar 31 2020 13:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47139 * 2 1 4 4 C 1.53000 * 109.46841 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46931 * 179.97438 * 4 3 2 6 6 O 1.42906 * 109.46865 * 180.02562 * 5 4 3 7 7 C 1.42903 * 113.99835 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.46769 * 179.97438 * 7 6 5 9 9 O 1.21286 * 120.00350 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99602 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00240 * 4.74832 * 10 8 7 12 12 C 1.50697 * 109.46906 * 269.99669 * 11 10 8 13 13 H 1.08004 * 120.00315 * 359.97438 * 12 11 10 14 14 C 1.37878 * 120.00353 * 179.97438 * 12 11 10 15 15 N 1.31514 * 119.99420 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00378 * 179.97438 * 14 12 11 17 17 H 1.48493 * 109.47149 * 89.99896 * 16 14 12 18 18 H 1.48503 * 109.46757 * 210.00522 * 16 14 12 19 19 H 1.48503 * 109.46892 * 329.99854 * 16 14 12 20 20 C 1.39921 * 120.00051 * 184.73635 * 10 8 7 21 21 C 1.38880 * 120.06637 * 67.90141 * 20 10 8 22 22 C 1.38112 * 119.92591 * 180.29734 * 21 20 10 23 23 C 1.38279 * 120.07227 * 359.46855 * 22 21 20 24 24 C 1.50699 * 119.93129 * 180.27773 * 23 22 21 25 25 C 1.38280 * 120.14278 * 0.50982 * 23 22 21 26 26 C 1.38114 * 120.06964 * 359.76678 * 25 23 22 27 27 H 1.09002 * 109.47014 * 59.99578 * 1 2 3 28 28 H 1.08995 * 109.47154 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46937 * 300.00409 * 1 2 3 30 30 H 1.09002 * 109.46937 * 239.99591 * 2 1 3 31 31 H 1.09005 * 109.46529 * 119.99850 * 2 1 3 32 32 H 1.09002 * 109.47540 * 59.99961 * 3 2 1 33 33 H 1.08997 * 109.47472 * 299.99639 * 3 2 1 34 34 H 1.09000 * 109.47074 * 60.00315 * 4 3 2 35 35 H 1.08994 * 109.47494 * 299.99884 * 4 3 2 36 36 H 1.08986 * 109.47050 * 60.00430 * 5 4 3 37 37 H 1.09002 * 109.46774 * 299.99985 * 5 4 3 38 38 H 1.09006 * 109.46886 * 60.00128 * 7 6 5 39 39 H 1.08999 * 109.47290 * 299.99831 * 7 6 5 40 40 H 1.08998 * 109.47136 * 29.98982 * 11 10 8 41 41 H 1.08997 * 109.47384 * 149.99417 * 11 10 8 42 42 H 0.97011 * 119.99942 * 179.97438 * 15 14 12 43 43 H 1.07999 * 120.03317 * 0.02829 * 21 20 10 44 44 H 1.08000 * 119.95987 * 179.70093 * 22 21 20 45 45 H 1.08997 * 109.47146 * 270.23432 * 24 23 22 46 46 H 1.09000 * 109.47057 * 30.22851 * 24 23 22 47 47 H 1.08997 * 109.47241 * 150.23012 * 24 23 22 48 48 H 1.08000 * 119.96877 * 179.74213 * 25 23 22 49 49 H 1.08001 * 120.03903 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0801 2.8849 0.0000 6 8 5.5091 2.8848 0.0000 7 6 6.0904 4.1903 -0.0012 8 6 7.5927 4.0712 -0.0004 9 8 8.1143 2.9762 0.0005 10 7 8.3567 5.1815 -0.0018 11 6 7.7303 6.5019 0.1010 12 6 7.4192 7.0191 -1.2799 13 1 7.6641 6.4240 -2.1473 14 6 6.8221 8.2520 -1.4360 15 7 6.5244 8.9768 -0.3798 16 14 6.4372 8.8934 -3.1477 17 1 5.0734 8.4595 -3.5438 18 1 6.5041 10.3770 -3.1469 19 1 7.4283 8.3538 -4.1130 20 6 9.7482 5.0732 -0.1012 21 6 10.3284 4.6194 -1.2786 22 6 11.7019 4.5078 -1.3714 23 6 12.4997 4.8577 -0.2975 24 6 13.9983 4.7405 -0.4044 25 6 11.9251 5.3103 0.8760 26 6 10.5519 5.4188 0.9773 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8901 32 1 1.6767 1.9564 0.8900 33 1 1.6768 1.9563 -0.8900 34 1 3.9337 0.9284 -0.8891 35 1 3.9330 0.9287 0.8908 36 1 3.7165 3.3992 0.8895 37 1 3.7171 3.3982 -0.8905 38 1 5.7688 4.7320 0.8884 39 1 5.7689 4.7304 -0.8916 40 1 6.8074 6.4225 0.6755 41 1 8.4119 7.1895 0.6015 42 1 6.1046 9.8444 -0.4895 43 1 9.7061 4.3500 -2.1191 44 1 12.1535 4.1504 -2.2850 45 1 14.3089 3.7466 -0.0826 46 1 14.3022 4.8988 -1.4391 47 1 14.4677 5.4915 0.2311 48 1 12.5506 5.5788 1.7145 49 1 10.1036 5.7719 1.8942 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263738505.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:12 Heat of formation + Delta-G solvation = -81.382266 kcal Electronic energy + Delta-G solvation = -26409.669076 eV Core-core repulsion = 22721.908878 eV Total energy + Delta-G solvation = -3687.760198 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.91459 -38.40501 -37.37726 -35.68831 -35.13770 -32.89519 -31.66520 -31.29321 -30.53989 -28.08514 -27.46352 -25.95428 -25.04392 -23.19422 -22.12607 -21.90437 -21.33819 -21.03044 -18.93304 -16.99350 -16.78891 -16.30370 -16.03746 -15.79600 -15.38556 -15.00532 -14.96119 -14.57350 -14.20324 -13.95552 -13.72744 -13.58055 -13.44881 -13.07984 -13.03195 -12.84353 -12.46620 -12.20056 -12.10974 -11.85661 -11.72290 -11.51876 -11.35623 -11.27107 -11.16471 -11.07526 -11.01232 -10.86442 -10.72165 -10.70438 -10.62068 -10.25296 -9.88374 -9.34199 -9.13580 -8.64061 -8.49599 -8.46975 -7.61388 -6.26461 -4.34411 1.71799 1.84890 3.17735 3.20794 3.25835 3.31139 3.35670 4.14387 4.23488 4.30909 4.77802 4.84304 4.95591 5.06922 5.11996 5.16297 5.18282 5.25272 5.37139 5.41497 5.47825 5.51402 5.58225 5.63539 5.65692 5.70841 5.72484 5.78036 5.82421 5.88223 5.91069 5.91820 5.94806 6.05284 6.07974 6.14734 6.23671 6.28038 6.44038 6.62073 6.79864 6.92907 6.94538 7.09708 7.23770 7.36771 7.64697 7.72703 7.93681 8.12555 8.69404 8.91373 9.33646 10.80289 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008948 B = 0.003391 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3128.545624 B = 8256.235485 C =10669.321706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.117 4.117 5 C 0.061 3.939 6 O -0.371 6.371 7 C 0.052 3.948 8 C 0.524 3.476 9 O -0.540 6.540 10 N -0.562 5.562 11 C 0.237 3.763 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.067 3.933 15 N -0.890 5.890 16 Si 0.897 3.103 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 C 0.173 3.827 21 C -0.103 4.103 22 C -0.112 4.112 23 C -0.105 4.105 24 C -0.107 4.107 25 C -0.113 4.113 26 C -0.120 4.120 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.041 0.959 41 H 0.042 0.958 42 H 0.266 0.734 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.065 0.935 46 H 0.062 0.938 47 H 0.062 0.938 48 H 0.119 0.881 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.280 -9.779 1.741 10.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.155 4.155 5 C -0.016 4.016 6 O -0.290 6.290 7 C -0.027 4.027 8 C 0.312 3.688 9 O -0.417 6.417 10 N -0.291 5.291 11 C 0.119 3.881 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.528 5.528 16 Si 0.724 3.276 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.082 3.918 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.105 4.105 24 C -0.164 4.164 25 C -0.131 4.131 26 C -0.140 4.140 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.076 0.924 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.083 0.917 46 H 0.081 0.919 47 H 0.081 0.919 48 H 0.137 0.863 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.032 -10.334 1.812 10.542 hybrid contribution -0.570 1.053 -0.942 1.524 sum -1.602 -9.280 0.870 9.458 Atomic orbital electron populations 1.21782 0.95970 1.01451 1.01825 1.21516 0.95678 0.96801 1.02186 1.21539 0.94654 0.97015 1.02335 1.21507 0.94760 0.95820 1.03405 1.22521 0.81244 0.97530 1.00333 1.87912 1.18936 1.26580 1.95573 1.22221 0.91400 0.85320 1.03742 1.20161 0.88711 0.83720 0.76192 1.90654 1.74880 1.26566 1.49588 1.45849 1.03279 1.08836 1.71140 1.19602 0.93690 0.76802 0.98026 1.21449 1.40861 1.03224 0.92384 0.91908 1.24927 0.95124 0.96288 0.97294 1.69919 1.41457 1.12420 1.28965 0.86497 0.78879 0.78135 0.84052 1.20400 1.20949 1.19669 1.17517 0.83367 0.97983 0.92955 1.21222 0.94768 0.99376 0.96849 1.20800 0.92977 1.01005 0.98314 1.19799 0.95677 1.00747 0.94302 1.20711 0.91714 1.01790 1.02201 1.20760 0.94109 1.00968 0.97306 1.21181 0.93579 1.01315 0.97890 0.92755 0.92897 0.92764 0.91935 0.91952 0.91804 0.91759 0.91129 0.91172 0.93383 0.93203 0.90398 0.88759 0.94115 0.94026 0.92386 0.86248 0.86327 0.91675 0.91902 0.91894 0.86254 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.91 37.16 0.37 -0.79 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.12 -1.14 5.21 -26.73 -0.14 -1.28 16 4 C -0.12 -1.41 5.58 -26.73 -0.15 -1.56 16 5 C 0.06 0.86 5.94 37.16 0.22 1.08 16 6 O -0.37 -6.95 9.88 -55.14 -0.54 -7.50 16 7 C 0.05 1.01 5.08 36.01 0.18 1.20 16 8 C 0.52 11.58 7.60 -10.99 -0.08 11.50 16 9 O -0.54 -13.24 16.26 -14.36 -0.23 -13.47 16 10 N -0.56 -12.36 2.51 -114.74 -0.29 -12.65 16 11 C 0.24 5.59 4.88 -5.19 -0.03 5.57 16 12 C -0.54 -13.83 9.16 -34.44 -0.32 -14.15 16 13 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 14 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 15 N -0.89 -23.93 13.29 55.43 0.74 -23.20 16 16 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 17 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 C 0.17 3.61 4.75 -83.69 -0.40 3.22 16 21 C -0.10 -2.02 9.55 -39.39 -0.38 -2.39 16 22 C -0.11 -1.85 9.69 -39.61 -0.38 -2.24 16 23 C -0.11 -1.59 5.88 -104.59 -0.62 -2.21 16 24 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 25 C -0.11 -1.78 9.69 -39.61 -0.38 -2.16 16 26 C -0.12 -2.22 9.69 -39.39 -0.38 -2.60 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.63 8.14 -51.94 -0.42 0.21 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.40 7.26 -51.93 -0.38 1.02 16 39 H 0.09 1.84 7.91 -51.93 -0.41 1.43 16 40 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 41 H 0.04 1.04 7.86 -51.93 -0.41 0.63 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 47 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 48 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 49 H 0.12 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 408.54 15.07 6.16 6.16 Total: -1.00 -30.08 408.54 -10.25 -40.33 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -8.68 Total: 2.36 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: -2.37 Total: -7.24 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.45 Total: -35.84 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.78 Total: -20.97 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.08 -10.25 -40.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263738505.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.049 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds