Wall clock time and date at job start Tue Mar 31 2020 12:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99990 * 0.02562 * 12 10 9 14 14 C 1.50693 * 109.47499 * 89.99706 * 13 12 10 15 15 H 1.08002 * 120.00173 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00325 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99845 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47316 * 59.99569 * 18 16 14 20 20 H 1.48498 * 109.47277 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47024 * 299.99626 * 18 16 14 22 22 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 23 23 C 1.53004 * 109.47092 * 90.00101 * 22 12 10 24 24 C 1.52998 * 109.47271 * 179.97438 * 23 22 12 25 25 C 1.53003 * 109.46934 * 175.00292 * 24 23 22 26 26 C 1.52995 * 109.47267 * 295.00194 * 24 23 22 27 27 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 1.09000 * 109.47344 * 210.00455 * 13 12 10 37 37 H 1.09007 * 109.46922 * 329.99873 * 13 12 10 38 38 H 0.96994 * 119.99979 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46957 * 209.99808 * 22 12 10 40 40 H 1.09001 * 109.47783 * 330.00075 * 22 12 10 41 41 H 1.08995 * 109.47233 * 300.00422 * 23 22 12 42 42 H 1.09004 * 109.46576 * 59.99847 * 23 22 12 43 43 H 1.09000 * 109.46634 * 55.00484 * 24 23 22 44 44 H 1.08997 * 109.47577 * 60.00146 * 25 24 23 45 45 H 1.09001 * 109.46746 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46782 * 300.00139 * 25 24 23 47 47 H 1.09003 * 109.46960 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.47530 * 299.99742 * 26 24 23 49 49 H 1.09000 * 109.47607 * 60.00276 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.7308 -2.3329 -0.5508 14 6 4.7514 -3.3609 -0.0460 15 1 3.7784 -3.4515 -0.5059 16 6 5.0974 -4.1861 1.0031 17 7 6.2824 -4.0762 1.5629 18 14 3.8836 -5.4609 1.6283 19 1 3.5430 -6.4006 0.5301 20 1 4.4932 -6.2150 2.7531 21 1 2.6500 -4.7810 2.0985 22 6 5.2943 -2.0649 -3.0359 23 6 6.5552 -1.4456 -3.6422 24 6 6.7277 -1.9432 -5.0787 25 6 7.9163 -1.2297 -5.7263 26 6 6.9822 -3.4518 -5.0689 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 6.6360 -2.8322 -0.8964 37 1 5.9816 -1.6434 0.2554 38 1 6.5257 -4.6564 2.3011 39 1 5.3868 -3.1510 -3.0360 40 1 4.4262 -1.7741 -3.6276 41 1 6.4628 -0.3596 -3.6421 42 1 7.4233 -1.7365 -3.0506 43 1 5.8226 -1.7310 -5.6478 44 1 8.8214 -1.4418 -5.1572 45 1 8.0389 -1.5839 -6.7498 46 1 7.7349 -0.1549 -5.7333 47 1 7.1055 -3.8061 -6.0923 48 1 7.8873 -3.6639 -4.4998 49 1 6.1355 -3.9602 -4.6076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264012806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:51 Heat of formation + Delta-G solvation = -71.518408 kcal Electronic energy + Delta-G solvation = -27687.078886 eV Core-core repulsion = 23999.746417 eV Total energy + Delta-G solvation = -3687.332469 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.10731 -38.83944 -37.12666 -36.44152 -34.59371 -32.61851 -32.39504 -29.90456 -29.40402 -27.54002 -27.03660 -26.90141 -26.41384 -23.16537 -22.84075 -21.88698 -21.20615 -19.68290 -18.31847 -17.61869 -16.55202 -16.22450 -16.03239 -15.64004 -15.39683 -15.05867 -14.88756 -14.34071 -14.24648 -14.17233 -13.73232 -13.47859 -13.27365 -12.80403 -12.58717 -12.39891 -12.30785 -12.08282 -12.02134 -11.78656 -11.69395 -11.51858 -11.38226 -11.09310 -10.95459 -10.89440 -10.80525 -10.75967 -10.55242 -10.53088 -10.39992 -10.18055 -10.00333 -9.66238 -9.02262 -8.57940 -8.47108 -7.83765 -7.59342 -6.13522 -4.20195 1.56760 1.71619 3.27280 3.31761 3.34615 3.55803 3.58331 3.89354 4.20516 4.39529 4.95210 5.02844 5.11655 5.17177 5.19676 5.20044 5.22557 5.25115 5.29008 5.52733 5.58435 5.60502 5.63478 5.77176 5.79213 5.86444 5.91558 5.95081 6.00356 6.06584 6.07898 6.13367 6.18391 6.31471 6.42193 6.45150 6.50279 6.55250 6.68110 6.70467 6.75865 6.82303 6.87576 7.04465 7.24050 7.63852 7.68884 7.82529 8.12133 8.45628 8.86265 9.16818 9.47682 10.93063 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.005313 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.553302 B = 5268.425770 C = 7801.007575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.143 3.857 4 C -0.212 4.212 5 C -0.090 4.090 6 C -0.160 4.160 7 C -0.074 4.074 8 C -0.081 4.081 9 C -0.092 4.092 10 C 0.525 3.475 11 O -0.570 6.570 12 N -0.597 5.597 13 C 0.238 3.762 14 C -0.534 4.534 15 H 0.060 0.940 16 C 0.065 3.935 17 N -0.893 5.893 18 Si 0.895 3.105 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.121 3.879 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.144 4.144 26 C -0.149 4.149 27 H 0.051 0.949 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.123 0.877 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.125 0.875 34 H 0.095 0.905 35 H 0.116 0.884 36 H 0.035 0.965 37 H 0.037 0.963 38 H 0.265 0.735 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.048 0.952 48 H 0.055 0.945 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.104 9.602 -5.201 11.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.098 3.902 4 C -0.231 4.231 5 C -0.109 4.109 6 C -0.179 4.179 7 C -0.092 4.092 8 C -0.083 4.083 9 C -0.132 4.132 10 C 0.313 3.687 11 O -0.451 6.451 12 N -0.327 5.327 13 C 0.118 3.882 14 C -0.573 4.573 15 H 0.079 0.921 16 C -0.137 4.137 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.201 1.201 22 C -0.002 4.002 23 C -0.165 4.165 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.206 4.206 27 H 0.070 0.930 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.143 0.857 34 H 0.113 0.887 35 H 0.134 0.866 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.146 9.605 -5.513 11.825 hybrid contribution -0.827 -0.741 0.522 1.227 sum -4.973 8.864 -4.991 11.323 Atomic orbital electron populations 1.23007 0.79072 1.03784 1.00715 1.86193 1.20722 1.26587 1.88158 1.18825 0.91829 0.84213 0.95361 1.21122 0.99601 0.92450 1.09940 1.20800 0.94645 0.96587 0.98829 1.20920 0.93870 0.98020 1.05041 1.20849 0.99747 0.91071 0.97534 1.18911 0.90444 0.95213 1.03687 1.20495 1.00744 0.95558 0.96358 1.20246 0.77618 0.80446 0.90390 1.90582 1.50171 1.57799 1.46551 1.48195 1.51785 1.24804 1.07965 1.19405 0.93820 0.91378 0.83597 1.21475 1.01294 1.17897 1.16616 0.92137 1.24924 0.95315 0.97277 0.96222 1.69912 1.19679 1.39281 1.24257 0.86602 0.81332 0.81425 0.78400 1.20206 1.21217 1.20057 1.21306 0.96983 0.98852 0.83069 1.21988 0.99024 1.00643 0.94876 1.21044 0.98406 0.95461 0.96339 1.21821 0.98263 1.00147 0.99934 1.21899 1.02238 0.95514 1.00987 0.92992 0.88411 0.93025 0.85916 0.86373 0.86307 0.85681 0.88652 0.86639 0.94728 0.94496 0.92554 0.90502 0.91418 0.92126 0.91865 0.91427 0.92802 0.93129 0.92954 0.93320 0.92621 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 9.81 101.05 0.99 1.37 16 2 O -0.30 -5.49 9.63 -19.42 -0.19 -5.68 16 3 C 0.14 2.52 6.66 -39.22 -0.26 2.26 16 4 C -0.21 -3.10 9.04 -39.43 -0.36 -3.45 16 5 C -0.09 -1.20 10.04 -39.60 -0.40 -1.59 16 6 C -0.16 -2.18 10.04 -39.56 -0.40 -2.58 16 7 C -0.07 -1.16 9.68 -39.61 -0.38 -1.54 16 8 C -0.08 -1.48 4.39 -104.48 -0.46 -1.94 16 9 C -0.09 -1.82 4.10 -29.04 -0.12 -1.94 16 10 C 0.52 11.45 7.67 -10.98 -0.08 11.37 16 11 O -0.57 -13.47 15.61 5.56 0.09 -13.38 16 12 N -0.60 -12.93 2.46 -175.06 -0.43 -13.36 16 13 C 0.24 5.68 4.96 -5.20 -0.03 5.66 16 14 C -0.53 -14.00 9.28 -34.44 -0.32 -14.32 16 15 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -24.62 13.29 55.43 0.74 -23.88 16 18 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.12 2.33 5.16 -4.04 -0.02 2.30 16 23 C -0.13 -2.09 5.01 -26.73 -0.13 -2.22 16 24 C -0.09 -1.28 2.92 -90.62 -0.26 -1.54 16 25 C -0.14 -1.72 9.19 37.16 0.34 -1.38 16 26 C -0.15 -1.94 8.95 37.16 0.33 -1.61 16 27 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 28 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.12 1.47 6.30 -52.49 -0.33 1.14 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.10 1.74 7.31 -51.93 -0.38 1.36 16 35 H 0.12 2.49 7.55 -51.93 -0.39 2.09 16 36 H 0.03 0.86 8.07 -51.93 -0.42 0.45 16 37 H 0.04 0.90 6.44 -51.92 -0.33 0.57 16 38 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 39 H 0.08 1.47 6.49 -51.93 -0.34 1.13 16 40 H 0.07 1.34 7.42 -51.93 -0.39 0.95 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.06 0.84 6.56 -51.93 -0.34 0.50 16 LS Contribution 399.27 15.07 6.02 6.02 Total: -1.00 -30.61 399.27 -8.79 -39.40 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -8.33 Total: 4.67 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -1.65 Total: -9.51 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.31 Total: -37.24 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.10 Total: -19.06 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.61 -8.79 -39.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.119 kcal (2) G-P(sol) polarization free energy of solvation -30.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds