Wall clock time and date at job start Tue Mar 31 2020 12:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35897 * 116.99817 * 2 1 4 4 C 1.38754 * 120.05719 * 359.95522 * 3 2 1 5 5 C 1.38122 * 119.94946 * 180.02562 * 4 3 2 6 6 C 1.38295 * 120.05026 * 0.02562 * 5 4 3 7 7 C 1.38242 * 120.11401 * 0.02562 * 6 5 4 8 8 C 1.38169 * 120.05494 * 359.94904 * 7 6 5 9 9 C 1.50694 * 120.02852 * 180.02562 * 8 7 6 10 10 C 1.50697 * 109.47497 * 265.00833 * 9 8 7 11 11 O 1.21276 * 119.99988 * 359.97438 * 10 9 8 12 12 N 1.34783 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46497 * 119.99990 * 0.02562 * 12 10 9 14 14 C 1.50693 * 109.47499 * 89.99706 * 13 12 10 15 15 H 1.08002 * 120.00173 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00325 * 180.02562 * 14 13 12 17 17 N 1.31521 * 119.99845 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00337 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47316 * 59.99569 * 18 16 14 20 20 H 1.48498 * 109.47277 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47024 * 299.99626 * 18 16 14 22 22 C 1.46493 * 119.99780 * 179.97438 * 12 10 9 23 23 C 1.53004 * 109.47092 * 90.00101 * 22 12 10 24 24 C 1.52998 * 109.47271 * 179.97438 * 23 22 12 25 25 C 1.53003 * 109.46934 * 175.00292 * 24 23 22 26 26 C 1.52995 * 109.47267 * 295.00194 * 24 23 22 27 27 H 1.09000 * 109.47023 * 60.00240 * 1 2 3 28 28 H 1.09002 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47655 * 300.00222 * 1 2 3 30 30 H 1.08002 * 120.02758 * 0.04150 * 4 3 2 31 31 H 1.07997 * 119.97891 * 180.29657 * 5 4 3 32 32 H 1.07997 * 119.93892 * 179.97438 * 6 5 4 33 33 H 1.07998 * 119.97158 * 179.97438 * 7 6 5 34 34 H 1.09004 * 109.47092 * 25.00582 * 9 8 7 35 35 H 1.09006 * 109.47197 * 145.00350 * 9 8 7 36 36 H 1.09000 * 109.47344 * 210.00455 * 13 12 10 37 37 H 1.09007 * 109.46922 * 329.99873 * 13 12 10 38 38 H 0.96994 * 119.99979 * 179.97438 * 17 16 14 39 39 H 1.09005 * 109.46957 * 209.99808 * 22 12 10 40 40 H 1.09001 * 109.47783 * 330.00075 * 22 12 10 41 41 H 1.08995 * 109.47233 * 300.00422 * 23 22 12 42 42 H 1.09004 * 109.46576 * 59.99847 * 23 22 12 43 43 H 1.09000 * 109.46634 * 55.00484 * 24 23 22 44 44 H 1.08997 * 109.47577 * 60.00146 * 25 24 23 45 45 H 1.09001 * 109.46746 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46782 * 300.00139 * 25 24 23 47 47 H 1.09003 * 109.46960 * 180.02562 * 26 24 23 48 48 H 1.09000 * 109.47530 * 299.99742 * 26 24 23 49 49 H 1.09000 * 109.47607 * 60.00276 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 -0.0009 5 6 1.9207 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0017 8 6 3.4311 1.2849 -0.0007 9 6 4.2537 0.0223 -0.0002 10 6 4.4238 -0.4671 -1.4154 11 8 3.9256 0.1486 -2.3338 12 7 5.1295 -1.5889 -1.6603 13 6 5.7308 -2.3329 -0.5508 14 6 4.7514 -3.3609 -0.0460 15 1 3.7784 -3.4515 -0.5059 16 6 5.0974 -4.1861 1.0031 17 7 6.2824 -4.0762 1.5629 18 14 3.8836 -5.4609 1.6283 19 1 3.5430 -6.4006 0.5301 20 1 4.4932 -6.2150 2.7531 21 1 2.6500 -4.7810 2.0985 22 6 5.2943 -2.0649 -3.0359 23 6 6.5552 -1.4456 -3.6422 24 6 6.7277 -1.9432 -5.0787 25 6 7.9163 -1.2297 -5.7263 26 6 6.9822 -3.4518 -5.0689 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2128 2.3203 -0.0010 31 1 1.3339 4.5114 0.0026 32 1 3.7920 4.6381 -0.0024 33 1 5.1344 2.5754 -0.0023 34 1 5.2326 0.2265 0.4336 35 1 3.7469 -0.7414 0.5899 36 1 6.6360 -2.8322 -0.8964 37 1 5.9816 -1.6434 0.2554 38 1 6.5257 -4.6564 2.3011 39 1 5.3868 -3.1510 -3.0360 40 1 4.4262 -1.7741 -3.6276 41 1 6.4628 -0.3596 -3.6421 42 1 7.4233 -1.7365 -3.0506 43 1 5.8226 -1.7310 -5.6478 44 1 8.8214 -1.4418 -5.1572 45 1 8.0389 -1.5839 -6.7498 46 1 7.7349 -0.1549 -5.7333 47 1 7.1055 -3.8061 -6.0923 48 1 7.8873 -3.6639 -4.4998 49 1 6.1355 -3.9602 -4.6076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264012806.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:51:51 Heat of formation + Delta-G solvation = -86.557315 kcal Electronic energy + Delta-G solvation = -27687.731022 eV Core-core repulsion = 23999.746417 eV Total energy + Delta-G solvation = -3687.984605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.42048 -40.42632 -38.31420 -37.77608 -36.33572 -34.47146 -33.84943 -31.06992 -30.83702 -29.11028 -28.41816 -27.99760 -27.75122 -24.96314 -24.43463 -23.02049 -22.46375 -20.88300 -19.96769 -18.86128 -18.56773 -17.92886 -17.35807 -17.12216 -16.58706 -16.38792 -16.34185 -16.01277 -15.73977 -15.31868 -14.92813 -14.81552 -14.50734 -14.32080 -14.06636 -14.00315 -13.65775 -13.43766 -13.33795 -13.16989 -12.97029 -12.88106 -12.84127 -12.68804 -12.59891 -12.26254 -12.22827 -12.05697 -11.97416 -11.86221 -11.68053 -11.62590 -11.55283 -11.39827 -10.77536 -10.54968 -9.74778 -9.41302 -9.03468 -8.19565 -6.33677 0.40559 0.56283 1.41124 1.41883 1.49796 1.81847 2.32257 2.45571 2.46530 2.91245 3.10186 3.79532 3.85597 3.90185 3.95079 4.05035 4.08648 4.13625 4.26935 4.35517 4.36547 4.38117 4.48893 4.58389 4.62419 4.66838 4.66907 4.69270 4.76627 4.83293 4.87607 4.92408 4.95121 5.03506 5.12180 5.13606 5.16326 5.21060 5.32044 5.43080 5.47236 5.51317 5.53488 5.62766 5.67047 5.88955 5.94967 6.07360 6.53221 6.59092 6.82552 7.32760 7.44698 8.85728 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007683 B = 0.005313 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3643.553302 B = 5268.425770 C = 7801.007575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.342 6.342 3 C 0.118 3.882 4 C -0.215 4.215 5 C -0.084 4.084 6 C -0.158 4.158 7 C -0.085 4.085 8 C -0.118 4.118 9 C -0.081 4.081 10 C 0.521 3.479 11 O -0.589 6.589 12 N -0.601 5.601 13 C 0.255 3.745 14 C -0.544 4.544 15 H 0.047 0.953 16 C 0.024 3.976 17 N -0.918 5.918 18 Si 0.953 3.047 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.274 1.274 22 C 0.120 3.880 23 C -0.115 4.115 24 C -0.090 4.090 25 C -0.140 4.140 26 C -0.147 4.147 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.073 0.927 30 H 0.148 0.852 31 H 0.158 0.842 32 H 0.152 0.848 33 H 0.134 0.866 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.022 0.978 37 H 0.029 0.971 38 H 0.268 0.732 39 H 0.074 0.926 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.068 0.932 44 H 0.054 0.946 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.070 0.930 48 H 0.052 0.948 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.926 10.852 -5.675 13.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.256 6.256 3 C 0.072 3.928 4 C -0.233 4.233 5 C -0.102 4.102 6 C -0.176 4.176 7 C -0.103 4.103 8 C -0.119 4.119 9 C -0.121 4.121 10 C 0.311 3.689 11 O -0.471 6.471 12 N -0.331 5.331 13 C 0.134 3.866 14 C -0.583 4.583 15 H 0.065 0.935 16 C -0.176 4.176 17 N -0.558 5.558 18 Si 0.778 3.222 19 H -0.197 1.197 20 H -0.204 1.204 21 H -0.199 1.199 22 C -0.003 4.003 23 C -0.153 4.153 24 C -0.109 4.109 25 C -0.197 4.197 26 C -0.204 4.204 27 H 0.081 0.919 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.166 0.834 31 H 0.175 0.825 32 H 0.170 0.830 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.087 0.913 44 H 0.073 0.927 45 H 0.089 0.911 46 H 0.070 0.930 47 H 0.089 0.911 48 H 0.071 0.929 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.969 10.856 -5.999 13.362 hybrid contribution -0.617 -1.072 0.653 1.399 sum -5.586 9.784 -5.346 12.470 Atomic orbital electron populations 1.23269 0.76871 1.04894 1.02265 1.86128 1.23289 1.27661 1.88559 1.19123 0.92005 0.85083 0.96539 1.21470 1.00867 0.91940 1.09028 1.21315 0.94879 0.97454 0.96532 1.21335 0.94308 0.98518 1.03450 1.21093 1.00619 0.91072 0.97561 1.18994 0.91069 0.95090 1.06708 1.20329 1.01173 0.96170 0.94418 1.20626 0.76992 0.80127 0.91166 1.90544 1.50881 1.58320 1.47343 1.48238 1.51675 1.24720 1.08457 1.19054 0.92919 0.90750 0.83878 1.21599 1.01050 1.18682 1.16967 0.93470 1.25603 0.96835 0.98938 0.96258 1.69995 1.20999 1.40101 1.24657 0.85684 0.79268 0.79163 0.78058 1.19706 1.20360 1.19893 1.21427 0.98051 0.98900 0.81913 1.21870 0.97104 0.99612 0.96732 1.21036 0.99523 0.96135 0.94236 1.21784 0.97176 0.99925 1.00864 1.21878 1.01494 0.94802 1.02242 0.91875 0.87691 0.90879 0.83415 0.82469 0.83016 0.84786 0.88090 0.89210 0.95984 0.95347 0.92283 0.90745 0.92231 0.93308 0.92471 0.91308 0.92667 0.91119 0.92984 0.91064 0.92906 0.93389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 9.81 113.37 1.11 1.65 16 2 O -0.34 -12.72 9.63 -92.39 -0.89 -13.61 16 3 C 0.12 4.17 6.66 22.51 0.15 4.32 16 4 C -0.21 -5.86 9.04 22.37 0.20 -5.66 16 5 C -0.08 -1.95 10.04 22.26 0.22 -1.72 16 6 C -0.16 -3.90 10.04 22.28 0.22 -3.68 16 7 C -0.09 -2.64 9.68 22.25 0.22 -2.42 16 8 C -0.12 -4.38 4.39 -19.77 -0.09 -4.46 16 9 C -0.08 -3.40 4.10 29.10 0.12 -3.28 16 10 C 0.52 23.80 7.67 87.65 0.67 24.47 16 11 O -0.59 -28.73 15.61 -3.02 -0.05 -28.78 16 12 N -0.60 -27.21 2.46 -826.17 -2.03 -29.24 16 13 C 0.25 12.71 4.96 85.63 0.43 13.13 16 14 C -0.54 -29.45 9.28 25.60 0.24 -29.21 16 15 H 0.05 2.64 7.81 -2.91 -0.02 2.61 16 16 C 0.02 1.30 5.46 84.65 0.46 1.76 16 17 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 18 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 19 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 21 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 22 C 0.12 4.77 5.16 86.38 0.45 5.21 16 23 C -0.11 -3.86 5.01 30.59 0.15 -3.70 16 24 C -0.09 -2.41 2.92 -10.79 -0.03 -2.44 16 25 C -0.14 -3.11 9.19 71.98 0.66 -2.45 16 26 C -0.15 -3.70 8.95 71.98 0.64 -3.06 16 27 H 0.06 1.39 7.66 -2.39 -0.02 1.38 16 28 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.07 1.46 7.66 -2.39 -0.02 1.44 16 30 H 0.15 3.14 6.30 -2.91 -0.02 3.12 16 31 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.66 16 33 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 34 H 0.10 3.92 7.31 -2.38 -0.02 3.90 16 35 H 0.09 4.16 7.55 -2.38 -0.02 4.14 16 36 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 37 H 0.03 1.46 6.44 -2.38 -0.02 1.45 16 38 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 39 H 0.07 2.96 6.49 -2.38 -0.02 2.95 16 40 H 0.06 2.45 7.42 -2.39 -0.02 2.43 16 41 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 44 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 47 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 49 H 0.05 1.32 6.56 -2.39 -0.02 1.30 16 Total: -1.00 -67.33 399.27 6.08 -61.24 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.91 Total: 28.11 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 5.83 Total: -11.54 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -1.74 Total: -80.30 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.94 Total: -42.39 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -67.33 6.08 -61.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264012806.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.316 kcal (2) G-P(sol) polarization free energy of solvation -67.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds