Wall clock time and date at job start Tue Mar 31 2020 12:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 C 1.52992 * 109.47598 * 120.00422 * 2 1 3 5 5 C 1.53001 * 109.47379 * 174.99957 * 4 2 1 6 6 N 1.46501 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99843 * 269.99741 * 6 5 4 8 8 C 1.50704 * 109.47117 * 270.00636 * 7 6 5 9 9 H 1.07998 * 119.99746 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00085 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00363 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46906 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46871 * 119.99899 * 12 10 8 15 15 H 1.48494 * 109.47357 * 240.00379 * 12 10 8 16 16 C 1.34768 * 120.00379 * 90.00176 * 6 5 4 17 17 O 1.21285 * 120.00294 * 179.97438 * 16 6 5 18 18 C 1.50705 * 119.99883 * 359.97438 * 16 6 5 19 19 O 1.42903 * 109.47122 * 180.02562 * 18 16 6 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 16 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09002 * 109.47107 * 299.99706 * 1 2 3 28 28 H 1.09003 * 109.47753 * 59.99251 * 1 2 3 29 29 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46756 * 240.00939 * 2 1 3 31 31 H 1.09003 * 109.47639 * 300.00458 * 3 2 1 32 32 H 1.09002 * 109.46880 * 60.00155 * 3 2 1 33 33 H 1.08998 * 109.47580 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47024 * 54.99920 * 4 2 1 35 35 H 1.08995 * 109.47246 * 295.00148 * 4 2 1 36 36 H 1.08995 * 109.46926 * 60.00271 * 5 4 2 37 37 H 1.09007 * 109.46881 * 299.99901 * 5 4 2 38 38 H 1.08997 * 109.46902 * 29.99926 * 7 6 5 39 39 H 1.08990 * 109.47369 * 150.00151 * 7 6 5 40 40 H 0.96997 * 120.00729 * 179.97438 * 11 10 8 41 41 H 1.09005 * 109.47119 * 60.00082 * 18 16 6 42 42 H 1.08993 * 109.47044 * 300.00277 * 18 16 6 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 7 4.0532 -1.5223 2.3836 7 6 4.4016 -0.7551 3.5821 8 6 5.8556 -0.3631 3.5225 9 1 6.4597 -0.6565 2.6767 10 6 6.4145 0.3699 4.5477 11 7 5.6787 0.7276 5.5775 12 14 8.2168 0.8553 4.4743 13 1 8.8189 0.3348 3.2206 14 1 8.3323 2.3356 4.5010 15 1 8.9319 0.2818 5.6426 16 6 4.1819 -2.8638 2.3812 17 8 4.5866 -3.4360 3.3710 18 6 3.8230 -3.6530 1.1485 19 8 4.0429 -5.0438 1.3925 20 6 3.7321 -5.8852 0.2802 21 6 4.0003 -7.3222 0.6470 22 6 2.9988 -8.0899 1.2115 23 6 3.2447 -9.4080 1.5474 24 6 4.4917 -9.9587 1.3182 25 6 5.4947 -9.1895 0.7586 26 6 5.2475 -7.8726 0.4184 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.6766 1.9565 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -1.7199 1.2950 35 1 1.7517 -0.1585 2.1368 36 1 3.9994 0.1675 1.1419 37 1 3.8532 -1.3940 0.2999 38 1 3.7851 0.1424 3.6309 39 1 4.2258 -1.3653 4.4679 40 1 6.0719 1.2431 6.2990 41 1 4.4450 -3.3273 0.3146 42 1 2.7735 -3.4887 0.9047 43 1 4.3528 -5.6061 -0.5713 44 1 2.6808 -5.7671 0.0178 45 1 2.0244 -7.6597 1.3902 46 1 2.4625 -10.0077 1.9889 47 1 4.6836 -10.9887 1.5803 48 1 6.4703 -9.6184 0.5836 49 1 6.0296 -7.2731 -0.0234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264110797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:25 Heat of formation + Delta-G solvation = -72.196239 kcal Electronic energy + Delta-G solvation = -26579.527707 eV Core-core repulsion = 22892.165844 eV Total energy + Delta-G solvation = -3687.361862 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.56880 -39.10052 -37.29691 -36.62951 -34.44227 -32.64397 -32.07772 -31.00142 -29.25016 -28.46005 -27.11134 -26.54938 -25.45019 -23.28658 -22.68654 -22.50085 -21.42955 -19.90526 -18.54524 -17.20279 -16.68105 -16.47671 -16.19953 -16.09713 -15.38883 -15.23367 -14.95746 -14.80024 -14.23762 -14.13941 -13.84513 -13.55725 -13.45474 -13.31720 -12.80240 -12.68851 -12.46905 -12.43249 -12.16183 -11.87191 -11.81857 -11.65333 -11.30470 -11.19749 -11.13536 -11.02603 -10.85530 -10.82026 -10.59355 -10.52779 -10.38612 -10.10712 -9.62290 -9.56125 -9.01028 -8.99892 -8.76672 -8.41736 -7.64351 -6.02369 -4.06836 1.15951 1.31190 3.29147 3.31216 3.38525 3.40855 3.45151 3.79754 4.31479 4.47706 4.69997 4.74009 4.88403 4.91019 4.94715 4.98823 5.03224 5.13302 5.17525 5.24462 5.28192 5.32651 5.39896 5.44084 5.48032 5.54802 5.62016 5.68163 5.74345 5.79346 5.85636 5.90163 5.93511 6.00010 6.13469 6.16657 6.25559 6.33263 6.38931 6.47922 6.50178 6.53032 6.87512 6.97563 7.21875 7.46783 7.57122 7.94497 8.25440 8.41370 8.92827 9.11929 9.58249 11.05738 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.003443 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.851917 B = 8131.330304 C =10648.880128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.151 4.151 4 C -0.135 4.135 5 C 0.109 3.891 6 N -0.596 5.596 7 C 0.249 3.751 8 C -0.525 4.525 9 H 0.058 0.942 10 C 0.061 3.939 11 N -0.894 5.894 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.284 1.284 15 H -0.283 1.283 16 C 0.506 3.494 17 O -0.519 6.519 18 C 0.044 3.956 19 O -0.354 6.354 20 C 0.099 3.901 21 C -0.086 4.086 22 C -0.097 4.097 23 C -0.125 4.125 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.097 4.097 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.033 0.967 39 H 0.043 0.957 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.058 0.942 44 H 0.057 0.943 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.123 0.877 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.160 -11.423 -16.035 21.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.174 4.174 5 C -0.015 4.015 6 N -0.329 5.329 7 C 0.130 3.870 8 C -0.564 4.564 9 H 0.076 0.924 10 C -0.141 4.141 11 N -0.534 5.534 12 Si 0.725 3.275 13 H -0.198 1.198 14 H -0.210 1.210 15 H -0.209 1.209 16 C 0.291 3.709 17 O -0.394 6.394 18 C -0.036 4.036 19 O -0.272 6.272 20 C 0.023 3.977 21 C -0.086 4.086 22 C -0.115 4.115 23 C -0.143 4.143 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.115 4.115 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.080 0.920 38 H 0.051 0.949 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.141 0.859 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -8.852 -11.693 -15.125 21.068 hybrid contribution 0.888 0.519 -0.236 1.055 sum -7.964 -11.174 -15.360 20.597 Atomic orbital electron populations 1.21833 0.95485 1.01436 1.01591 1.21057 0.95469 0.96622 0.98076 1.21913 1.01718 0.95704 1.01511 1.22142 0.96366 1.00509 0.98356 1.21567 0.93198 0.99173 0.87587 1.48187 1.63811 1.05142 1.15809 1.19275 0.95530 0.90452 0.81769 1.21475 0.95440 1.33640 1.05848 0.92416 1.24928 0.98147 0.95916 0.95102 1.69940 1.36000 1.38379 1.09042 0.86455 0.84992 0.77900 0.78154 1.19808 1.20996 1.20868 1.19900 0.79575 0.82771 0.88670 1.90706 1.44580 1.69261 1.34878 1.22412 1.00782 0.82663 0.97764 1.88133 1.87857 1.15050 1.36191 1.21348 0.99640 0.87373 0.89383 1.19596 0.94418 0.94241 1.00355 1.21082 0.99209 0.94024 0.97209 1.21135 0.97309 0.95383 1.00492 1.21181 0.93485 0.99864 0.98976 1.21144 0.99235 0.94281 0.99601 1.21100 0.95994 0.95269 0.99104 0.92628 0.92989 0.92957 0.91426 0.93187 0.92447 0.91977 0.92302 0.91022 0.89502 0.92009 0.94863 0.93890 0.92795 0.90965 0.91016 0.92426 0.92458 0.85901 0.85969 0.86121 0.85944 0.85849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 37.15 0.34 -1.03 16 2 C -0.09 -0.98 2.92 -90.63 -0.26 -1.24 16 3 C -0.15 -1.63 8.95 37.16 0.33 -1.30 16 4 C -0.14 -1.78 5.01 -26.73 -0.13 -1.92 16 5 C 0.11 1.71 4.97 -4.04 -0.02 1.69 16 6 N -0.60 -12.63 2.46 -175.06 -0.43 -13.06 16 7 C 0.25 6.53 5.16 -5.19 -0.03 6.50 16 8 C -0.53 -15.00 9.39 -34.44 -0.32 -15.32 16 9 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.75 13.29 55.43 0.74 -26.01 16 12 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 16 C 0.51 11.03 7.75 -10.99 -0.09 10.95 16 17 O -0.52 -14.12 16.08 -14.36 -0.23 -14.35 16 18 C 0.04 0.70 4.97 36.01 0.18 0.87 16 19 O -0.35 -6.10 9.86 -55.14 -0.54 -6.64 16 20 C 0.10 1.22 6.06 36.01 0.22 1.44 16 21 C -0.09 -1.09 5.51 -104.62 -0.58 -1.66 16 22 C -0.10 -1.13 9.70 -39.58 -0.38 -1.52 16 23 C -0.13 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.71 16 26 C -0.10 -1.15 9.70 -39.58 -0.38 -1.53 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.71 6.57 -51.93 -0.34 0.37 16 34 H 0.06 0.75 7.22 -51.92 -0.37 0.37 16 35 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.43 6.50 -51.93 -0.34 1.09 16 37 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 38 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 39 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 40 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 0.98 7.40 -51.93 -0.38 0.59 16 42 H 0.07 0.93 7.18 -51.93 -0.37 0.55 16 43 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 45 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 46 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 47 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 48 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 49 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 403.79 15.07 6.09 6.09 Total: -1.00 -35.19 403.79 -10.23 -45.42 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.41 Total: -1.08 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -2.42 Total: -7.41 kcal Atomic # 7 Polarization: -39.38 SS G_CDS: 0.31 Total: -39.07 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.77 Total: -21.00 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.19 -10.23 -45.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.780 kcal (2) G-P(sol) polarization free energy of solvation -35.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds