Wall clock time and date at job start Tue Mar 31 2020 12:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 C 1.52992 * 109.47598 * 120.00422 * 2 1 3 5 5 C 1.53001 * 109.47379 * 174.99957 * 4 2 1 6 6 N 1.46501 * 109.46929 * 180.02562 * 5 4 2 7 7 C 1.46506 * 119.99843 * 269.99741 * 6 5 4 8 8 C 1.50704 * 109.47117 * 270.00636 * 7 6 5 9 9 H 1.07998 * 119.99746 * 359.97438 * 8 7 6 10 10 C 1.37869 * 120.00085 * 179.97438 * 8 7 6 11 11 N 1.31518 * 120.00187 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 120.00363 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.46906 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.46871 * 119.99899 * 12 10 8 15 15 H 1.48494 * 109.47357 * 240.00379 * 12 10 8 16 16 C 1.34768 * 120.00379 * 90.00176 * 6 5 4 17 17 O 1.21285 * 120.00294 * 179.97438 * 16 6 5 18 18 C 1.50705 * 119.99883 * 359.97438 * 16 6 5 19 19 O 1.42903 * 109.47122 * 180.02562 * 18 16 6 20 20 C 1.42893 * 113.99793 * 180.02562 * 19 18 16 21 21 C 1.50707 * 109.47070 * 179.97438 * 20 19 18 22 22 C 1.38238 * 119.99792 * 89.99993 * 21 20 19 23 23 C 1.38235 * 119.99712 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00220 * 359.97124 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00179 * 269.97930 * 21 20 19 27 27 H 1.09002 * 109.47107 * 299.99706 * 1 2 3 28 28 H 1.09003 * 109.47753 * 59.99251 * 1 2 3 29 29 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.46756 * 240.00939 * 2 1 3 31 31 H 1.09003 * 109.47639 * 300.00458 * 3 2 1 32 32 H 1.09002 * 109.46880 * 60.00155 * 3 2 1 33 33 H 1.08998 * 109.47580 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.47024 * 54.99920 * 4 2 1 35 35 H 1.08995 * 109.47246 * 295.00148 * 4 2 1 36 36 H 1.08995 * 109.46926 * 60.00271 * 5 4 2 37 37 H 1.09007 * 109.46881 * 299.99901 * 5 4 2 38 38 H 1.08997 * 109.46902 * 29.99926 * 7 6 5 39 39 H 1.08990 * 109.47369 * 150.00151 * 7 6 5 40 40 H 0.96997 * 120.00729 * 179.97438 * 11 10 8 41 41 H 1.09005 * 109.47119 * 60.00082 * 18 16 6 42 42 H 1.08993 * 109.47044 * 300.00277 * 18 16 6 43 43 H 1.09005 * 109.47744 * 60.00256 * 20 19 18 44 44 H 1.09000 * 109.47353 * 299.99456 * 20 19 18 45 45 H 1.08005 * 120.00068 * 359.97438 * 22 21 20 46 46 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 47 47 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 48 48 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 49 49 H 1.07999 * 119.99968 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 6 3.5649 -0.8311 1.1877 6 7 4.0532 -1.5223 2.3836 7 6 4.4016 -0.7551 3.5821 8 6 5.8556 -0.3631 3.5225 9 1 6.4597 -0.6565 2.6767 10 6 6.4145 0.3699 4.5477 11 7 5.6787 0.7276 5.5775 12 14 8.2168 0.8553 4.4743 13 1 8.8189 0.3348 3.2206 14 1 8.3323 2.3356 4.5010 15 1 8.9319 0.2818 5.6426 16 6 4.1819 -2.8638 2.3812 17 8 4.5866 -3.4360 3.3710 18 6 3.8230 -3.6530 1.1485 19 8 4.0429 -5.0438 1.3925 20 6 3.7321 -5.8852 0.2802 21 6 4.0003 -7.3222 0.6470 22 6 2.9988 -8.0899 1.2115 23 6 3.2447 -9.4080 1.5474 24 6 4.4917 -9.9587 1.3182 25 6 5.4947 -9.1895 0.7586 26 6 5.2475 -7.8726 0.4184 27 1 -0.3633 0.5138 0.8900 28 1 -0.3635 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8932 -0.5137 -0.8901 31 1 1.6766 1.9565 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 3.1299 1.4426 -0.0005 34 1 1.6054 -1.7199 1.2950 35 1 1.7517 -0.1585 2.1368 36 1 3.9994 0.1675 1.1419 37 1 3.8532 -1.3940 0.2999 38 1 3.7851 0.1424 3.6309 39 1 4.2258 -1.3653 4.4679 40 1 6.0719 1.2431 6.2990 41 1 4.4450 -3.3273 0.3146 42 1 2.7735 -3.4887 0.9047 43 1 4.3528 -5.6061 -0.5713 44 1 2.6808 -5.7671 0.0178 45 1 2.0244 -7.6597 1.3902 46 1 2.4625 -10.0077 1.9889 47 1 4.6836 -10.9887 1.5803 48 1 6.4703 -9.6184 0.5836 49 1 6.0296 -7.2731 -0.0234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264110797.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:24 Heat of formation + Delta-G solvation = -91.710768 kcal Electronic energy + Delta-G solvation = -26580.373920 eV Core-core repulsion = 22892.165844 eV Total energy + Delta-G solvation = -3688.208076 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.93467 -40.17882 -38.44390 -37.87384 -36.07071 -34.69419 -32.99131 -31.79571 -30.87487 -29.74699 -28.15909 -27.92454 -26.59969 -24.81001 -24.20621 -23.48879 -22.26700 -20.82132 -20.15588 -18.65291 -18.35502 -17.79988 -17.47578 -17.28923 -16.84087 -16.35463 -16.18655 -15.90258 -15.78100 -15.31000 -15.04963 -14.59127 -14.52622 -14.32892 -14.23341 -13.94332 -13.68376 -13.62795 -13.35563 -13.16020 -13.01780 -12.92026 -12.86075 -12.66296 -12.62055 -12.28251 -12.13959 -11.92450 -11.87525 -11.81292 -11.56649 -11.48035 -11.37912 -10.69818 -10.65725 -10.58237 -9.82549 -9.76370 -9.44809 -8.23225 -6.37992 0.31987 0.49619 1.34993 1.38041 1.49518 1.75706 2.00136 2.37938 2.75453 3.06263 3.22853 3.61875 3.90242 3.91537 3.95734 4.02095 4.14338 4.14909 4.17084 4.24485 4.28556 4.34849 4.39096 4.42943 4.55137 4.64628 4.74386 4.76701 4.85504 4.87272 4.98573 5.00139 5.07326 5.10786 5.14890 5.18243 5.18670 5.24295 5.39076 5.52778 5.53741 5.56180 5.59672 5.60809 5.66414 5.81701 6.05046 6.07716 6.12759 6.69392 6.75828 7.27160 7.45426 8.84223 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008757 B = 0.003443 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3196.851917 B = 8131.330304 C =10648.880128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.153 4.153 4 C -0.127 4.127 5 C 0.104 3.896 6 N -0.598 5.598 7 C 0.265 3.735 8 C -0.542 4.542 9 H 0.054 0.946 10 C 0.007 3.993 11 N -0.928 5.928 12 Si 0.968 3.032 13 H -0.266 1.266 14 H -0.267 1.267 15 H -0.283 1.283 16 C 0.492 3.508 17 O -0.589 6.589 18 C 0.059 3.941 19 O -0.394 6.394 20 C 0.097 3.903 21 C -0.111 4.111 22 C -0.114 4.114 23 C -0.133 4.133 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.116 4.116 27 H 0.043 0.957 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.052 0.948 34 H 0.069 0.931 35 H 0.043 0.957 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.025 0.975 39 H -0.007 1.007 40 H 0.267 0.733 41 H 0.105 0.895 42 H 0.110 0.890 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.131 0.869 46 H 0.144 0.856 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.267 -12.076 -19.023 24.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.105 4.105 3 C -0.210 4.210 4 C -0.166 4.166 5 C -0.018 4.018 6 N -0.330 5.330 7 C 0.144 3.856 8 C -0.581 4.581 9 H 0.072 0.928 10 C -0.192 4.192 11 N -0.568 5.568 12 Si 0.792 3.208 13 H -0.190 1.190 14 H -0.192 1.192 15 H -0.209 1.209 16 C 0.281 3.719 17 O -0.469 6.469 18 C -0.020 4.020 19 O -0.314 6.314 20 C 0.021 3.979 21 C -0.111 4.111 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.152 4.152 26 C -0.134 4.134 27 H 0.062 0.938 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.110 0.890 31 H 0.087 0.913 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.095 0.905 37 H 0.119 0.881 38 H 0.043 0.957 39 H 0.011 0.989 40 H 0.076 0.924 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.149 0.851 46 H 0.162 0.838 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.992 -12.327 -18.179 23.734 hybrid contribution 0.877 0.669 0.711 1.312 sum -8.115 -11.658 -17.468 22.514 Atomic orbital electron populations 1.21820 0.94452 1.02102 1.01840 1.21039 0.96245 0.95978 0.97209 1.21932 1.01148 0.96265 1.01698 1.22064 0.94461 1.01137 0.98930 1.21911 0.94722 0.98727 0.86453 1.48183 1.63423 1.05464 1.15890 1.18691 0.94762 0.89534 0.82625 1.21737 0.96440 1.33894 1.05998 0.92798 1.25867 1.03002 0.95743 0.94580 1.70060 1.38118 1.38900 1.09739 0.85367 0.78958 0.78312 0.78172 1.19023 1.19215 1.20891 1.21088 0.78053 0.82819 0.89961 1.90661 1.47770 1.70597 1.37898 1.22323 1.03403 0.81799 0.94497 1.88086 1.88558 1.15706 1.39003 1.21591 1.01508 0.86363 0.88429 1.19840 0.95061 0.94770 1.01442 1.21344 0.99614 0.94776 0.97463 1.21486 0.98226 0.95265 1.00101 1.21560 0.93151 1.01082 0.98119 1.21477 1.00424 0.94018 0.99250 1.21341 0.96134 0.96162 0.99761 0.93798 0.91387 0.92105 0.88963 0.91256 0.94046 0.92872 0.91255 0.93790 0.90546 0.88070 0.95748 0.98921 0.92414 0.87720 0.87260 0.90427 0.90075 0.85081 0.83813 0.83585 0.83988 0.85385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.19 71.98 0.66 -1.68 16 2 C -0.09 -1.57 2.92 -10.80 -0.03 -1.60 16 3 C -0.15 -3.07 8.95 71.98 0.64 -2.43 16 4 C -0.13 -3.20 5.01 30.59 0.15 -3.05 16 5 C 0.10 3.13 4.97 86.38 0.43 3.56 16 6 N -0.60 -25.87 2.46 -826.14 -2.03 -27.90 16 7 C 0.27 14.71 5.16 85.63 0.44 15.15 16 8 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 9 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 10 C 0.01 0.41 5.46 84.65 0.46 0.87 16 11 N -0.93 -57.28 13.29 21.44 0.28 -57.00 16 12 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 13 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 14 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 C 0.49 21.82 7.75 87.66 0.68 22.50 16 17 O -0.59 -33.73 16.08 15.99 0.26 -33.47 16 18 C 0.06 1.74 4.97 71.24 0.35 2.10 16 19 O -0.39 -13.17 9.86 -129.94 -1.28 -14.45 16 20 C 0.10 2.18 6.06 71.24 0.43 2.61 16 21 C -0.11 -2.70 5.51 -19.86 -0.11 -2.81 16 22 C -0.11 -2.55 9.70 22.27 0.22 -2.34 16 23 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 24 C -0.12 -2.22 10.05 22.27 0.22 -1.99 16 25 C -0.13 -2.66 10.05 22.27 0.22 -2.44 16 26 C -0.12 -2.68 9.70 22.27 0.22 -2.46 16 27 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 1.15 6.57 -2.39 -0.02 1.13 16 34 H 0.07 1.60 7.22 -2.38 -0.02 1.58 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 2.48 6.50 -2.39 -0.02 2.47 16 37 H 0.10 2.27 6.44 -2.38 -0.02 2.25 16 38 H 0.02 1.37 8.07 -2.39 -0.02 1.35 16 39 H -0.01 -0.48 7.42 -2.39 -0.02 -0.49 16 40 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 41 H 0.11 2.42 7.40 -2.38 -0.02 2.40 16 42 H 0.11 2.40 7.18 -2.39 -0.02 2.39 16 43 H 0.08 1.40 8.08 -2.38 -0.02 1.38 16 44 H 0.08 1.40 8.09 -2.39 -0.02 1.38 16 45 H 0.13 2.56 8.06 -2.91 -0.02 2.53 16 46 H 0.14 2.03 8.06 -2.91 -0.02 2.00 16 47 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 48 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 49 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -82.15 403.79 5.62 -76.53 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: 0.90 Total: 16.55 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 5.46 Total: -8.10 kcal Atomic # 7 Polarization: -83.15 SS G_CDS: -1.74 Total: -84.90 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -1.02 Total: -47.92 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -82.15 5.62 -76.53 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264110797.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.179 kcal (2) G-P(sol) polarization free energy of solvation -82.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds