Wall clock time and date at job start Tue Mar 31 2020 12:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99766 * 2 1 4 4 C 1.50700 * 109.47383 * 179.97438 * 3 2 1 5 5 C 1.38384 * 119.92822 * 270.02885 * 4 3 2 6 6 C 1.38333 * 120.29147 * 180.02562 * 5 4 3 7 7 C 1.37980 * 120.14933 * 359.69247 * 6 5 4 8 8 C 1.39565 * 119.84602 * 0.53308 * 7 6 5 9 9 C 1.47841 * 120.14181 * 179.76945 * 8 7 6 10 10 O 1.21553 * 120.00255 * 155.41315 * 9 8 7 11 11 N 1.34778 * 120.00022 * 335.41265 * 9 8 7 12 12 C 1.46499 * 120.00156 * 19.31836 * 11 9 8 13 13 C 1.50705 * 109.47229 * 294.58193 * 12 11 9 14 14 H 1.07997 * 119.99461 * 125.53254 * 13 12 11 15 15 C 1.37872 * 120.00066 * 305.53120 * 13 12 11 16 16 N 1.31517 * 119.99832 * 4.43999 * 15 13 12 17 17 Si 1.86797 * 119.99993 * 184.44415 * 15 13 12 18 18 H 1.48490 * 109.47549 * 59.99860 * 17 15 13 19 19 H 1.48498 * 109.47094 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46785 * 299.99677 * 17 15 13 21 21 C 1.46508 * 120.00045 * 199.32087 * 11 9 8 22 22 C 1.52993 * 109.46893 * 265.67449 * 21 11 9 23 23 C 1.53005 * 109.46950 * 180.02562 * 22 21 11 24 24 C 1.52997 * 109.47005 * 65.00056 * 23 22 21 25 25 C 1.53002 * 109.47093 * 185.00212 * 23 22 21 26 26 C 1.37935 * 119.92821 * 89.99666 * 4 3 2 27 27 H 1.09002 * 109.47208 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47478 * 299.99829 * 1 2 3 29 29 H 1.09000 * 109.47531 * 60.00116 * 1 2 3 30 30 H 1.08999 * 109.47183 * 60.00037 * 3 2 1 31 31 H 1.09003 * 109.47315 * 300.00342 * 3 2 1 32 32 H 1.08001 * 119.85184 * 359.97438 * 5 4 3 33 33 H 1.07999 * 119.92595 * 179.97438 * 6 5 4 34 34 H 1.07997 * 120.07847 * 180.27724 * 7 6 5 35 35 H 1.08998 * 109.47415 * 174.58191 * 12 11 9 36 36 H 1.09004 * 109.47045 * 54.57986 * 12 11 9 37 37 H 0.96997 * 119.99812 * 179.97438 * 16 15 13 38 38 H 1.09002 * 109.46774 * 25.67823 * 21 11 9 39 39 H 1.08996 * 109.46704 * 145.67633 * 21 11 9 40 40 H 1.08997 * 109.47458 * 300.00172 * 22 21 11 41 41 H 1.08997 * 109.47371 * 60.00005 * 22 21 11 42 42 H 1.09001 * 109.46842 * 305.00274 * 23 22 21 43 43 H 1.09001 * 109.47142 * 60.00402 * 24 23 22 44 44 H 1.09001 * 109.46889 * 179.97438 * 24 23 22 45 45 H 1.08998 * 109.47237 * 300.00103 * 24 23 22 46 46 H 1.09001 * 109.47318 * 60.00090 * 25 23 22 47 47 H 1.08995 * 109.47126 * 179.97438 * 25 23 22 48 48 H 1.08995 * 109.47101 * 300.00161 * 25 23 22 49 49 H 1.08003 * 120.07124 * 0.02752 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.2002 1.1318 1.2002 6 6 5.5792 1.0232 1.2096 7 6 6.2777 0.9625 0.0212 8 6 5.5905 1.0221 -1.1921 9 6 6.3328 0.9627 -2.4693 10 8 5.7776 0.5714 -3.4774 11 7 7.6251 1.3425 -2.5160 12 6 8.4149 1.4061 -1.2838 13 6 7.8594 2.4817 -0.3861 14 1 7.5783 2.2453 0.6296 15 6 7.7101 3.7672 -0.8613 16 7 7.9696 4.0364 -2.1223 17 14 7.1393 5.1267 0.2856 18 1 8.1048 5.2679 1.4049 19 1 7.0594 6.4059 -0.4642 20 1 5.7993 4.7867 0.8277 21 6 8.2401 1.6917 -3.7991 22 6 8.9444 0.4631 -4.3781 23 6 9.5872 0.8280 -5.7178 24 6 10.6945 1.8586 -5.4882 25 6 10.1839 -0.4281 -6.3561 26 6 4.1990 1.1321 -1.1945 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6884 1.8465 -0.8900 32 1 3.6579 1.1748 2.1332 33 1 6.1100 0.9813 2.1492 34 1 7.3539 0.8732 0.0298 35 1 9.4518 1.6367 -1.5282 36 1 8.3673 0.4451 -0.7717 37 1 7.8642 4.9408 -2.4567 38 1 7.4690 2.0287 -4.4918 39 1 8.9670 2.4897 -3.6482 40 1 9.7154 0.1261 -3.6854 41 1 8.2175 -0.3350 -4.5289 42 1 8.8313 1.2485 -6.3809 43 1 11.4505 1.4380 -4.8251 44 1 11.1527 2.1181 -6.4426 45 1 10.2694 2.7533 -5.0335 46 1 9.3950 -1.1623 -6.5196 47 1 10.6414 -0.1683 -7.3106 48 1 10.9397 -0.8486 -5.6929 49 1 3.6610 1.1749 -2.1300 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264130949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:50:59 Heat of formation + Delta-G solvation = -32.385233 kcal Electronic energy + Delta-G solvation = -28055.703186 eV Core-core repulsion = 24370.067659 eV Total energy + Delta-G solvation = -3685.635528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.36242 -39.56019 -38.32960 -37.74735 -36.74525 -34.08926 -33.19116 -31.87248 -30.60043 -29.09394 -27.96434 -27.90447 -26.08824 -25.24349 -24.87538 -23.10230 -22.43657 -20.81371 -20.70401 -18.45021 -17.70502 -17.28193 -17.26490 -17.19369 -16.62140 -16.37287 -16.08815 -15.90312 -15.61643 -15.12348 -15.02769 -14.61820 -14.43986 -14.39375 -14.23300 -13.91774 -13.52300 -13.31841 -13.12216 -13.03956 -12.80991 -12.78136 -12.71576 -12.61938 -12.27396 -12.16203 -12.09425 -11.96497 -11.68250 -11.55319 -11.53574 -11.36876 -11.12312 -10.75162 -10.63982 -10.40264 -9.67160 -9.37361 -8.93381 -8.18956 -6.21306 0.29815 0.64029 1.41997 1.45591 1.48003 2.04760 2.38701 2.61025 2.88431 3.18718 3.49249 3.94446 3.98752 4.00167 4.08772 4.12992 4.16217 4.29256 4.40660 4.42531 4.47917 4.55812 4.56583 4.68208 4.72983 4.77806 4.80434 4.83794 4.84398 4.87885 4.89627 5.02258 5.07730 5.12347 5.18986 5.21571 5.27262 5.28797 5.42585 5.53536 5.54924 5.65806 5.70714 5.74703 5.79930 5.90532 6.15717 6.23210 6.28885 6.56631 7.02221 7.36398 7.57756 8.80833 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011824 B = 0.004549 C = 0.003606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2367.484355 B = 6153.803557 C = 7762.718495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.413 6.413 3 C 0.116 3.884 4 C -0.155 4.155 5 C -0.070 4.070 6 C -0.179 4.179 7 C -0.035 4.035 8 C -0.168 4.168 9 C 0.553 3.447 10 O -0.618 6.618 11 N -0.566 5.566 12 C 0.218 3.782 13 C -0.547 4.547 14 H 0.098 0.902 15 C 0.045 3.955 16 N -0.876 5.876 17 Si 0.933 3.067 18 H -0.259 1.259 19 H -0.296 1.296 20 H -0.276 1.276 21 C 0.148 3.852 22 C -0.119 4.119 23 C -0.092 4.092 24 C -0.141 4.141 25 C -0.138 4.138 26 C -0.060 4.060 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.045 0.955 30 H 0.077 0.923 31 H 0.051 0.949 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.188 0.812 35 H 0.041 0.959 36 H 0.054 0.946 37 H 0.260 0.740 38 H 0.025 0.975 39 H 0.087 0.913 40 H 0.064 0.936 41 H 0.039 0.961 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.043 0.957 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -4.237 3.289 5.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.040 3.960 4 C -0.155 4.155 5 C -0.089 4.089 6 C -0.197 4.197 7 C -0.053 4.053 8 C -0.171 4.171 9 C 0.344 3.656 10 O -0.504 6.504 11 N -0.292 5.292 12 C 0.099 3.901 13 C -0.584 4.584 14 H 0.115 0.885 15 C -0.160 4.160 16 N -0.511 5.511 17 Si 0.760 3.240 18 H -0.184 1.184 19 H -0.223 1.223 20 H -0.201 1.201 21 C 0.025 3.975 22 C -0.158 4.158 23 C -0.111 4.111 24 C -0.199 4.199 25 C -0.195 4.195 26 C -0.080 4.080 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.166 0.834 34 H 0.204 0.796 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.044 0.956 39 H 0.105 0.895 40 H 0.083 0.917 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.066 0.934 47 H 0.087 0.913 48 H 0.079 0.921 49 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.357 -4.420 2.636 5.660 hybrid contribution -0.792 1.544 -0.007 1.735 sum -3.149 -2.876 2.629 5.010 Atomic orbital electron populations 1.22950 0.79541 1.03827 1.00917 1.87958 1.21433 1.28323 1.95552 1.21236 0.88781 0.84711 1.01286 1.19454 0.94880 1.08209 0.92983 1.21367 0.94708 0.95479 0.97312 1.21308 0.94267 1.05604 0.98533 1.23269 1.03359 0.87772 0.90882 1.19762 0.93715 1.09708 0.93944 1.18619 0.82373 0.76475 0.88146 1.90568 1.70544 1.50514 1.38743 1.47948 1.09416 1.62721 1.09143 1.19805 0.92452 0.95175 0.82703 1.21998 1.43053 0.93357 0.99961 0.88492 1.25509 0.94502 1.00353 0.95677 1.70049 1.45978 1.20637 1.14439 0.85957 0.79376 0.78800 0.79905 1.18383 1.22259 1.20131 1.21182 0.96215 0.96473 0.83641 1.21976 0.98881 0.97661 0.97258 1.21027 0.97552 0.97161 0.95342 1.21818 0.97896 0.98261 1.01875 1.21771 1.00577 0.96345 1.00837 1.20922 0.92983 0.96477 0.97573 0.88503 0.92459 0.93658 0.90480 0.93031 0.83799 0.83408 0.79558 0.94056 0.92852 0.93057 0.95643 0.89484 0.91721 0.94226 0.92540 0.92268 0.91435 0.93826 0.93363 0.91281 0.92118 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 11.01 113.37 1.25 1.73 16 2 O -0.41 -12.58 10.69 -148.98 -1.59 -14.18 16 3 C 0.12 3.46 6.06 71.24 0.43 3.90 16 4 C -0.15 -5.70 5.50 -19.90 -0.11 -5.81 16 5 C -0.07 -2.33 9.69 22.33 0.22 -2.11 16 6 C -0.18 -6.12 9.56 22.23 0.21 -5.91 16 7 C -0.04 -1.42 5.79 22.53 0.13 -1.29 16 8 C -0.17 -7.77 5.43 -20.09 -0.11 -7.88 16 9 C 0.55 28.01 7.30 86.79 0.63 28.64 16 10 O -0.62 -34.43 16.43 -3.88 -0.06 -34.49 16 11 N -0.57 -26.36 1.84 -838.65 -1.54 -27.90 16 12 C 0.22 9.37 5.25 85.63 0.45 9.82 16 13 C -0.55 -24.64 5.70 25.60 0.15 -24.50 16 14 H 0.10 4.09 5.22 -2.91 -0.02 4.07 16 15 C 0.05 2.18 5.39 84.65 0.46 2.64 16 16 N -0.88 -44.73 10.60 21.45 0.23 -44.50 16 17 Si 0.93 39.67 29.54 68.60 2.03 41.70 16 18 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 19 H -0.30 -13.00 7.11 99.48 0.71 -12.30 16 20 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 21 C 0.15 6.51 4.12 86.38 0.36 6.87 16 22 C -0.12 -4.33 5.01 30.59 0.15 -4.18 16 23 C -0.09 -2.73 2.92 -10.79 -0.03 -2.76 16 24 C -0.14 -3.86 8.95 71.98 0.64 -3.22 16 25 C -0.14 -3.33 9.19 71.98 0.66 -2.67 16 26 C -0.06 -2.65 9.24 22.52 0.21 -2.44 16 27 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.08 1.87 8.08 -2.39 -0.02 1.86 16 31 H 0.05 1.51 8.08 -2.39 -0.02 1.49 16 32 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 34 H 0.19 7.34 2.25 -17.11 -0.04 7.30 16 35 H 0.04 1.78 7.90 -2.39 -0.02 1.76 16 36 H 0.05 2.07 6.31 -2.38 -0.02 2.05 16 37 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 38 H 0.02 1.24 7.63 -2.39 -0.02 1.22 16 39 H 0.09 3.93 5.42 -2.39 -0.01 3.91 16 40 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.04 1.37 6.56 -2.39 -0.02 1.35 16 46 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 49 H 0.10 4.52 7.84 -2.91 -0.02 4.50 16 Total: -1.00 -61.92 385.80 5.65 -56.27 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: 0.89 Total: 32.27 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.70 Total: -9.16 kcal Atomic # 7 Polarization: -71.09 SS G_CDS: -1.31 Total: -72.40 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -1.66 Total: -48.67 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -61.92 5.65 -56.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264130949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.880 kcal (2) G-P(sol) polarization free energy of solvation -61.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds