Wall clock time and date at job start Tue Mar 31 2020 12:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00159 * 2 1 3 5 5 C 1.53006 * 109.46952 * 120.00008 * 2 1 3 6 6 N 1.46494 * 109.46898 * 54.26607 * 5 2 1 7 7 C 1.46500 * 119.99723 * 275.80453 * 6 5 2 8 8 C 1.50697 * 109.47563 * 270.00307 * 7 6 5 9 9 H 1.08000 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00317 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99700 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47434 * 59.99939 * 12 10 8 14 14 H 1.48505 * 109.46926 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46838 * 299.99514 * 12 10 8 16 16 C 1.34776 * 120.00424 * 95.81087 * 6 5 2 17 17 O 1.21275 * 119.99999 * 185.43678 * 16 6 5 18 18 C 1.50707 * 119.99570 * 5.43953 * 16 6 5 19 19 C 1.52998 * 109.46821 * 174.42006 * 18 16 6 20 20 O 1.42896 * 109.47124 * 179.97438 * 19 18 16 21 21 C 1.35901 * 117.00214 * 180.02562 * 20 19 18 22 22 C 1.38732 * 120.05611 * 179.97438 * 21 20 19 23 23 C 1.38149 * 119.94247 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.05737 * 0.02803 * 23 22 21 25 25 C 1.38269 * 120.11036 * 359.95355 * 24 23 22 26 26 C 1.38137 * 120.05914 * 0.04395 * 25 24 23 27 27 H 1.09004 * 109.46769 * 299.99934 * 1 2 3 28 28 H 1.09001 * 109.47164 * 59.99930 * 1 2 3 29 29 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47325 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47188 * 300.00055 * 3 2 1 32 32 H 1.09004 * 109.47275 * 60.00376 * 3 2 1 33 33 H 1.09004 * 109.47127 * 304.12871 * 4 2 1 34 34 H 1.08998 * 109.47004 * 64.13101 * 4 2 1 35 35 H 1.08999 * 109.47127 * 184.13151 * 4 2 1 36 36 H 1.08996 * 109.47118 * 294.26209 * 5 2 1 37 37 H 1.09003 * 109.46867 * 174.26312 * 5 2 1 38 38 H 1.09001 * 109.46956 * 30.00985 * 7 6 5 39 39 H 1.09007 * 109.47120 * 150.00237 * 7 6 5 40 40 H 0.96999 * 119.99458 * 180.02562 * 11 10 8 41 41 H 1.08996 * 109.46949 * 54.42380 * 18 16 6 42 42 H 1.08998 * 109.46910 * 294.41958 * 18 16 6 43 43 H 1.09004 * 109.47219 * 59.99800 * 19 18 16 44 44 H 1.08998 * 109.47639 * 300.00601 * 19 18 16 45 45 H 1.08004 * 120.02876 * 359.70776 * 22 21 20 46 46 H 1.07999 * 119.97034 * 180.02562 * 23 22 21 47 47 H 1.07999 * 119.94782 * 179.97438 * 24 23 22 48 48 H 1.08003 * 119.96876 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.03264 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.4422 -2.0568 1.3202 7 6 0.1135 -2.2341 1.9111 8 6 0.2513 -2.4928 3.3893 9 1 1.2308 -2.5218 3.8433 10 6 -0.8729 -2.6924 4.1621 11 7 -2.0657 -2.6576 3.6091 12 14 -0.7019 -3.0124 5.9946 13 1 -0.0249 -1.8577 6.6377 14 1 -2.0488 -3.1934 6.5932 15 1 0.1039 -4.2411 6.2094 16 6 2.1147 -3.1225 0.8420 17 8 1.5818 -4.2114 0.8102 18 6 3.5289 -2.9608 0.3469 19 6 4.1051 -4.3331 -0.0077 20 8 5.4458 -4.1798 -0.4777 21 6 6.1065 -5.3114 -0.8380 22 6 7.4111 -5.2359 -1.3037 23 6 8.0807 -6.3877 -1.6688 24 6 7.4516 -7.6150 -1.5709 25 6 6.1515 -7.6930 -1.1067 26 6 5.4776 -6.5442 -0.7402 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6175 -1.7253 -1.2871 34 1 1.7384 -0.1664 -2.1377 35 1 3.1275 -0.7858 -1.2130 36 1 1.7630 -0.1516 2.1363 37 1 3.1252 -0.8111 1.1994 38 1 -0.4775 -1.3318 1.7536 39 1 -0.3841 -3.0813 1.4389 40 1 -2.8566 -2.7977 4.1529 41 1 4.1366 -2.5021 1.1269 42 1 3.5334 -2.3250 -0.5384 43 1 3.4972 -4.7919 -0.7875 44 1 4.1004 -4.9690 0.8776 45 1 7.9013 -4.2769 -1.3849 46 1 9.0964 -6.3295 -2.0311 47 1 7.9766 -8.5143 -1.8572 48 1 5.6624 -8.6529 -1.0307 49 1 4.4620 -6.6055 -0.3781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264181854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:26 Heat of formation + Delta-G solvation = -59.871058 kcal Electronic energy + Delta-G solvation = -27325.551444 eV Core-core repulsion = 23638.724041 eV Total energy + Delta-G solvation = -3686.827403 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.22150 -39.52786 -37.52416 -37.00092 -33.94861 -32.53362 -31.95022 -31.02023 -29.65403 -27.94000 -27.18707 -26.79781 -25.62671 -24.53502 -22.80153 -22.33872 -21.40538 -19.32097 -18.49533 -17.73022 -16.71558 -16.56612 -16.17727 -15.90163 -15.62390 -15.34051 -14.96637 -14.53758 -14.32424 -13.89637 -13.81416 -13.60613 -13.54023 -13.31308 -12.86727 -12.62752 -12.49037 -12.23195 -11.98532 -11.73557 -11.68200 -11.59551 -11.37060 -11.32127 -11.22764 -10.98319 -10.85219 -10.82023 -10.61852 -10.58828 -10.39939 -10.17791 -10.12335 -9.58268 -9.11759 -9.00435 -8.42934 -8.27754 -7.65532 -6.05965 -4.10556 1.22737 1.34951 3.02189 3.30078 3.32249 3.34920 3.39335 3.69150 4.02877 4.43544 4.71218 4.79054 4.93691 4.99143 5.00568 5.02077 5.08175 5.09068 5.25726 5.27522 5.31133 5.34594 5.50687 5.55905 5.64807 5.70812 5.73470 5.83573 5.86452 5.89381 5.96575 5.99057 6.13028 6.17111 6.21713 6.23082 6.30302 6.32307 6.41371 6.41738 6.57069 6.68362 6.76354 7.07426 7.38111 7.42985 7.52596 7.90389 8.22765 8.37450 8.86011 9.02747 9.54267 11.01784 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003390 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.451747 B = 8258.004046 C =10056.636441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.137 4.137 4 C -0.145 4.145 5 C 0.117 3.883 6 N -0.588 5.588 7 C 0.238 3.762 8 C -0.529 4.529 9 H 0.056 0.944 10 C 0.062 3.938 11 N -0.894 5.894 12 Si 0.896 3.104 13 H -0.277 1.277 14 H -0.286 1.286 15 H -0.277 1.277 16 C 0.514 3.486 17 O -0.547 6.547 18 C -0.151 4.151 19 C 0.076 3.924 20 O -0.318 6.318 21 C 0.137 3.863 22 C -0.157 4.157 23 C -0.084 4.084 24 C -0.165 4.165 25 C -0.080 4.080 26 C -0.208 4.208 27 H 0.059 0.941 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.047 0.953 39 H 0.042 0.958 40 H 0.264 0.736 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.129 0.871 46 H 0.126 0.874 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.982 0.946 -11.294 19.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.087 4.087 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.007 4.007 6 N -0.319 5.319 7 C 0.119 3.881 8 C -0.568 4.568 9 H 0.074 0.926 10 C -0.140 4.140 11 N -0.533 5.533 12 Si 0.724 3.276 13 H -0.202 1.202 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.300 3.700 17 O -0.425 6.425 18 C -0.191 4.191 19 C 0.001 3.999 20 O -0.232 6.232 21 C 0.091 3.909 22 C -0.176 4.176 23 C -0.103 4.103 24 C -0.183 4.183 25 C -0.098 4.098 26 C -0.226 4.226 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.123 0.877 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.147 0.853 46 H 0.144 0.856 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 15.512 0.567 -11.242 19.166 hybrid contribution -0.158 -0.266 1.188 1.228 sum 15.353 0.302 -10.054 18.355 Atomic orbital electron populations 1.22056 0.93821 1.03225 1.00977 1.20989 0.96974 0.95142 0.95639 1.21807 1.00569 0.95308 1.01824 1.22038 1.00229 1.00768 0.97125 1.21595 0.97014 0.84522 0.97574 1.48110 1.20526 1.05294 1.57946 1.19527 0.77275 0.98612 0.92636 1.21431 0.92894 1.49334 0.93161 0.92622 1.24911 0.95117 0.95177 0.98767 1.69919 0.97609 1.49703 1.36057 0.86590 0.77173 0.78856 0.84988 1.20248 1.21181 1.20239 1.19894 0.86810 0.84842 0.78456 1.90676 1.69742 1.25730 1.56363 1.21823 0.95559 0.97689 1.04042 1.22504 0.79483 0.98033 0.99890 1.85973 1.28239 1.29990 1.79014 1.19045 0.92016 0.85468 0.94391 1.20445 0.92717 0.99608 1.04809 1.20931 0.99440 0.91841 0.98038 1.21039 0.95642 0.97768 1.03893 1.20985 0.94471 0.97891 0.96460 1.21445 1.01850 0.92324 1.07018 0.92201 0.93733 0.91017 0.92851 0.92756 0.92413 0.92457 0.92834 0.92640 0.90049 0.91324 0.93509 0.93984 0.92672 0.88545 0.87662 0.91015 0.91137 0.85321 0.85595 0.86132 0.85836 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 6.98 37.16 0.26 -1.97 16 2 C -0.09 -1.16 0.85 -154.50 -0.13 -1.29 16 3 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 4 C -0.14 -1.81 6.84 37.16 0.25 -1.56 16 5 C 0.12 1.83 4.58 -4.04 -0.02 1.82 16 6 N -0.59 -11.80 2.00 -175.06 -0.35 -12.15 16 7 C 0.24 5.96 3.93 -5.20 -0.02 5.94 16 8 C -0.53 -14.67 9.39 -34.44 -0.32 -14.99 16 9 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 10 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 11 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 12 Si 0.90 21.65 29.54 -169.99 -5.02 16.63 16 13 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 14 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 15 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 16 C 0.51 10.21 6.40 -10.98 -0.07 10.14 16 17 O -0.55 -13.16 15.54 5.56 0.09 -13.07 16 18 C -0.15 -2.25 4.43 -27.88 -0.12 -2.37 16 19 C 0.08 1.12 4.05 37.16 0.15 1.27 16 20 O -0.32 -4.49 10.14 -19.43 -0.20 -4.68 16 21 C 0.14 1.81 6.69 -39.21 -0.26 1.55 16 22 C -0.16 -1.77 9.99 -39.43 -0.39 -2.17 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.21 16 24 C -0.17 -1.60 10.04 -39.56 -0.40 -2.00 16 25 C -0.08 -0.87 10.04 -39.61 -0.40 -1.26 16 26 C -0.21 -2.64 9.04 -39.43 -0.36 -3.00 16 27 H 0.06 0.97 7.72 -51.93 -0.40 0.57 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 1.32 5.76 -51.93 -0.30 1.02 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.84 6.74 -51.93 -0.35 0.49 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.05 0.61 6.49 -51.93 -0.34 0.27 16 36 H 0.08 1.35 8.11 -51.93 -0.42 0.92 16 37 H 0.07 0.91 6.11 -51.93 -0.32 0.59 16 38 H 0.05 1.16 5.32 -51.93 -0.28 0.89 16 39 H 0.04 1.21 7.35 -51.93 -0.38 0.83 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.10 1.31 7.34 -51.93 -0.38 0.93 16 42 H 0.11 1.37 4.67 -51.93 -0.24 1.12 16 43 H 0.07 1.08 7.56 -51.93 -0.39 0.68 16 44 H 0.07 1.10 7.66 -51.93 -0.40 0.70 16 45 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 46 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 48 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 49 H 0.13 1.71 6.30 -52.49 -0.33 1.38 16 LS Contribution 385.23 15.07 5.81 5.81 Total: -1.00 -31.82 385.23 -8.83 -40.65 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -7.88 Total: 2.86 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.01 Total: -10.64 kcal Atomic # 7 Polarization: -37.93 SS G_CDS: 0.39 Total: -37.54 kcal Atomic # 8 Polarization: -17.64 SS G_CDS: -0.11 Total: -17.75 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.82 -8.83 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264181854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.223 kcal (2) G-P(sol) polarization free energy of solvation -31.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds