Wall clock time and date at job start Tue Mar 31 2020 12:52:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47061 * 2 1 4 4 C 1.52999 * 109.47027 * 240.00159 * 2 1 3 5 5 C 1.53006 * 109.46952 * 120.00008 * 2 1 3 6 6 N 1.46494 * 109.46898 * 54.26607 * 5 2 1 7 7 C 1.46500 * 119.99723 * 275.80453 * 6 5 2 8 8 C 1.50697 * 109.47563 * 270.00307 * 7 6 5 9 9 H 1.08000 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.37881 * 120.00317 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99700 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 119.99901 * 180.02562 * 10 8 7 13 13 H 1.48498 * 109.47434 * 59.99939 * 12 10 8 14 14 H 1.48505 * 109.46926 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.46838 * 299.99514 * 12 10 8 16 16 C 1.34776 * 120.00424 * 95.81087 * 6 5 2 17 17 O 1.21275 * 119.99999 * 185.43678 * 16 6 5 18 18 C 1.50707 * 119.99570 * 5.43953 * 16 6 5 19 19 C 1.52998 * 109.46821 * 174.42006 * 18 16 6 20 20 O 1.42896 * 109.47124 * 179.97438 * 19 18 16 21 21 C 1.35901 * 117.00214 * 180.02562 * 20 19 18 22 22 C 1.38732 * 120.05611 * 179.97438 * 21 20 19 23 23 C 1.38149 * 119.94247 * 179.97438 * 22 21 20 24 24 C 1.38258 * 120.05737 * 0.02803 * 23 22 21 25 25 C 1.38269 * 120.11036 * 359.95355 * 24 23 22 26 26 C 1.38137 * 120.05914 * 0.04395 * 25 24 23 27 27 H 1.09004 * 109.46769 * 299.99934 * 1 2 3 28 28 H 1.09001 * 109.47164 * 59.99930 * 1 2 3 29 29 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47325 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47188 * 300.00055 * 3 2 1 32 32 H 1.09004 * 109.47275 * 60.00376 * 3 2 1 33 33 H 1.09004 * 109.47127 * 304.12871 * 4 2 1 34 34 H 1.08998 * 109.47004 * 64.13101 * 4 2 1 35 35 H 1.08999 * 109.47127 * 184.13151 * 4 2 1 36 36 H 1.08996 * 109.47118 * 294.26209 * 5 2 1 37 37 H 1.09003 * 109.46867 * 174.26312 * 5 2 1 38 38 H 1.09001 * 109.46956 * 30.00985 * 7 6 5 39 39 H 1.09007 * 109.47120 * 150.00237 * 7 6 5 40 40 H 0.96999 * 119.99458 * 180.02562 * 11 10 8 41 41 H 1.08996 * 109.46949 * 54.42380 * 18 16 6 42 42 H 1.08998 * 109.46910 * 294.41958 * 18 16 6 43 43 H 1.09004 * 109.47219 * 59.99800 * 19 18 16 44 44 H 1.08998 * 109.47639 * 300.00601 * 19 18 16 45 45 H 1.08004 * 120.02876 * 359.70776 * 22 21 20 46 46 H 1.07999 * 119.97034 * 180.02562 * 23 22 21 47 47 H 1.07999 * 119.94782 * 179.97438 * 24 23 22 48 48 H 1.08003 * 119.96876 * 180.02562 * 25 24 23 49 49 H 1.07998 * 120.03264 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2493 6 7 1.4422 -2.0568 1.3202 7 6 0.1135 -2.2341 1.9111 8 6 0.2513 -2.4928 3.3893 9 1 1.2308 -2.5218 3.8433 10 6 -0.8729 -2.6924 4.1621 11 7 -2.0657 -2.6576 3.6091 12 14 -0.7019 -3.0124 5.9946 13 1 -0.0249 -1.8577 6.6377 14 1 -2.0488 -3.1934 6.5932 15 1 0.1039 -4.2411 6.2094 16 6 2.1147 -3.1225 0.8420 17 8 1.5818 -4.2114 0.8102 18 6 3.5289 -2.9608 0.3469 19 6 4.1051 -4.3331 -0.0077 20 8 5.4458 -4.1798 -0.4777 21 6 6.1065 -5.3114 -0.8380 22 6 7.4111 -5.2359 -1.3037 23 6 8.0807 -6.3877 -1.6688 24 6 7.4516 -7.6150 -1.5709 25 6 6.1515 -7.6930 -1.1067 26 6 5.4776 -6.5442 -0.7402 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6175 -1.7253 -1.2871 34 1 1.7384 -0.1664 -2.1377 35 1 3.1275 -0.7858 -1.2130 36 1 1.7630 -0.1516 2.1363 37 1 3.1252 -0.8111 1.1994 38 1 -0.4775 -1.3318 1.7536 39 1 -0.3841 -3.0813 1.4389 40 1 -2.8566 -2.7977 4.1529 41 1 4.1366 -2.5021 1.1269 42 1 3.5334 -2.3250 -0.5384 43 1 3.4972 -4.7919 -0.7875 44 1 4.1004 -4.9690 0.8776 45 1 7.9013 -4.2769 -1.3849 46 1 9.0964 -6.3295 -2.0311 47 1 7.9766 -8.5143 -1.8572 48 1 5.6624 -8.6529 -1.0307 49 1 4.4620 -6.6055 -0.3781 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264181854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:52:26 Heat of formation + Delta-G solvation = -77.120237 kcal Electronic energy + Delta-G solvation = -27326.299424 eV Core-core repulsion = 23638.724041 eV Total energy + Delta-G solvation = -3687.575383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39709 -40.82430 -38.60602 -38.24926 -35.70588 -34.36651 -33.30694 -31.88447 -30.66079 -29.63427 -28.20114 -28.09002 -27.00479 -25.98715 -24.27252 -23.36694 -22.50254 -20.67246 -19.57774 -19.05491 -18.68084 -17.86968 -17.49060 -17.13088 -16.79841 -16.63786 -16.40232 -16.09512 -15.34560 -15.15055 -15.03686 -14.79681 -14.45633 -14.41332 -14.30593 -14.15243 -13.87304 -13.58796 -13.28122 -13.02664 -12.93257 -12.88613 -12.67018 -12.52528 -12.48908 -12.46822 -12.38435 -12.15816 -11.95878 -11.77899 -11.73870 -11.69323 -11.50676 -11.36516 -10.68522 -10.60779 -9.95296 -9.37922 -9.18792 -8.21777 -6.36194 0.39151 0.48810 1.35235 1.39022 1.46072 1.72869 1.87230 2.35533 2.62381 2.84950 3.07652 3.58473 3.80818 3.84917 3.89029 3.90972 3.93857 4.01799 4.14111 4.24954 4.33103 4.43145 4.50313 4.52247 4.59931 4.64940 4.67905 4.79549 4.80011 4.82659 4.95166 4.96531 5.08283 5.09463 5.11223 5.13391 5.22211 5.26611 5.37566 5.38636 5.46510 5.49533 5.54563 5.60237 5.60465 5.85849 5.87097 6.09344 6.38028 6.69579 6.77899 7.26766 7.43449 8.84529 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011419 B = 0.003390 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2451.451747 B = 8258.004046 C =10056.636441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.110 3.890 6 N -0.590 5.590 7 C 0.258 3.742 8 C -0.547 4.547 9 H 0.053 0.947 10 C 0.010 3.990 11 N -0.927 5.927 12 Si 0.963 3.037 13 H -0.260 1.260 14 H -0.279 1.279 15 H -0.279 1.279 16 C 0.506 3.494 17 O -0.600 6.600 18 C -0.134 4.134 19 C 0.086 3.914 20 O -0.320 6.320 21 C 0.106 3.894 22 C -0.162 4.162 23 C -0.081 4.081 24 C -0.161 4.161 25 C -0.090 4.090 26 C -0.229 4.229 27 H 0.044 0.956 28 H 0.064 0.936 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.044 0.956 39 H -0.009 1.009 40 H 0.266 0.734 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.060 0.940 44 H 0.054 0.946 45 H 0.144 0.856 46 H 0.160 0.840 47 H 0.150 0.850 48 H 0.139 0.861 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.492 2.074 -11.821 22.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.082 4.082 3 C -0.188 4.188 4 C -0.199 4.199 5 C -0.012 4.012 6 N -0.319 5.319 7 C 0.137 3.863 8 C -0.585 4.585 9 H 0.071 0.929 10 C -0.189 4.189 11 N -0.567 5.567 12 Si 0.788 3.212 13 H -0.184 1.184 14 H -0.204 1.204 15 H -0.205 1.205 16 C 0.295 3.705 17 O -0.482 6.482 18 C -0.173 4.173 19 C 0.010 3.990 20 O -0.234 6.234 21 C 0.061 3.939 22 C -0.181 4.181 23 C -0.098 4.098 24 C -0.179 4.179 25 C -0.108 4.108 26 C -0.248 4.248 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.089 0.911 37 H 0.121 0.879 38 H 0.061 0.939 39 H 0.009 0.991 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.162 0.838 46 H 0.178 0.822 47 H 0.168 0.832 48 H 0.156 0.844 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 19.059 1.737 -11.782 22.474 hybrid contribution -1.222 -0.683 1.269 1.889 sum 17.837 1.054 -10.513 20.731 Atomic orbital electron populations 1.21994 0.95943 1.00671 1.01233 1.20966 0.95150 0.97110 0.94998 1.21756 1.01942 0.92706 1.02407 1.22016 1.01501 0.99178 0.97180 1.21939 0.98770 0.82066 0.98452 1.48052 1.18978 1.07513 1.57361 1.18956 0.79748 0.96230 0.91378 1.21766 0.92863 1.49390 0.94515 0.92922 1.25806 0.94740 0.94786 1.03609 1.70046 0.98359 1.50442 1.37838 0.85535 0.77431 0.78942 0.79319 1.18445 1.20442 1.20454 1.20756 0.88519 0.83784 0.77463 1.90645 1.71300 1.27825 1.58463 1.21695 0.91778 0.98339 1.05488 1.22232 0.80247 0.97555 0.98933 1.85921 1.27377 1.30614 1.79453 1.19376 0.93078 0.85229 0.96193 1.20757 0.91868 1.01125 1.04313 1.21373 1.00738 0.91056 0.96665 1.21449 0.95002 0.99149 1.02321 1.21266 0.95338 0.97877 0.96358 1.21495 1.01641 0.93341 1.08303 0.93657 0.91695 0.94938 0.90590 0.91400 0.92705 0.95331 0.91097 0.90254 0.91081 0.87870 0.93854 0.99080 0.92483 0.86298 0.85077 0.92125 0.92813 0.83841 0.82201 0.83212 0.84360 0.86499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.48 6.98 71.98 0.50 -3.98 16 2 C -0.08 -2.08 0.85 -52.18 -0.04 -2.12 16 3 C -0.13 -2.43 8.47 71.98 0.61 -1.82 16 4 C -0.14 -3.27 6.84 71.98 0.49 -2.78 16 5 C 0.11 3.35 4.58 86.38 0.40 3.75 16 6 N -0.59 -24.51 2.00 -826.15 -1.65 -26.16 16 7 C 0.26 13.74 3.93 85.63 0.34 14.08 16 8 C -0.55 -31.47 9.39 25.60 0.24 -31.23 16 9 H 0.05 2.99 7.81 -2.91 -0.02 2.96 16 10 C 0.01 0.56 5.46 84.65 0.46 1.02 16 11 N -0.93 -56.25 13.29 21.45 0.28 -55.96 16 12 Si 0.96 45.07 29.54 68.60 2.03 47.10 16 13 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 15 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 16 C 0.51 20.88 6.40 87.66 0.56 21.44 16 17 O -0.60 -30.95 15.54 -3.01 -0.05 -31.00 16 18 C -0.13 -3.88 4.43 29.85 0.13 -3.75 16 19 C 0.09 2.61 4.05 71.98 0.29 2.90 16 20 O -0.32 -8.85 10.14 -92.43 -0.94 -9.78 16 21 C 0.11 2.77 6.69 22.51 0.15 2.92 16 22 C -0.16 -3.33 9.99 22.37 0.22 -3.11 16 23 C -0.08 -1.30 10.04 22.25 0.22 -1.07 16 24 C -0.16 -2.69 10.04 22.28 0.22 -2.46 16 25 C -0.09 -1.88 10.04 22.25 0.22 -1.66 16 26 C -0.23 -5.96 9.04 22.36 0.20 -5.76 16 27 H 0.04 1.53 7.72 -2.38 -0.02 1.51 16 28 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.03 1.27 5.76 -2.39 -0.01 1.25 16 30 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.03 0.82 6.74 -2.39 -0.02 0.80 16 34 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.45 6.49 -2.39 -0.02 1.43 16 36 H 0.07 2.32 8.11 -2.39 -0.02 2.30 16 37 H 0.10 2.42 6.11 -2.39 -0.01 2.41 16 38 H 0.04 2.32 5.32 -2.39 -0.01 2.30 16 39 H -0.01 -0.56 7.35 -2.38 -0.02 -0.58 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.12 2.96 7.34 -2.39 -0.02 2.94 16 42 H 0.13 3.12 4.67 -2.39 -0.01 3.11 16 43 H 0.06 1.94 7.56 -2.38 -0.02 1.92 16 44 H 0.05 1.78 7.66 -2.39 -0.02 1.76 16 45 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 46 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 48 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 49 H 0.12 3.29 6.30 -2.91 -0.02 3.27 16 Total: -1.00 -74.35 385.23 5.83 -68.52 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.93 Total: 20.90 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 5.23 Total: -13.62 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -1.37 Total: -82.12 kcal Atomic # 8 Polarization: -39.80 SS G_CDS: -0.98 Total: -40.78 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -74.35 5.83 -68.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264181854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.598 kcal (2) G-P(sol) polarization free energy of solvation -74.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds