Wall clock time and date at job start Tue Mar 31 2020 12:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47557 * 2 1 4 4 C 1.53000 * 109.46975 * 120.00408 * 2 1 3 5 5 C 1.52999 * 109.47160 * 174.45531 * 4 2 1 6 6 H 1.08997 * 109.54334 * 58.01328 * 5 4 2 7 7 C 1.53099 * 109.50470 * 297.90855 * 5 4 2 8 8 O 1.43018 * 109.25875 * 183.21486 * 7 5 4 9 9 C 1.43016 * 113.73586 * 58.66990 * 8 7 5 10 10 C 1.53099 * 109.26105 * 301.33147 * 9 8 7 11 11 N 1.47010 * 109.50811 * 178.12636 * 5 4 2 12 12 C 1.46898 * 111.00196 * 302.32675 * 11 5 4 13 13 C 1.50697 * 109.47016 * 300.35622 * 12 11 5 14 14 C 1.38307 * 119.93430 * 95.71723 * 13 12 11 15 15 C 1.38096 * 120.06766 * 180.02562 * 14 13 12 16 16 C 1.38879 * 119.93147 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06758 * 180.02562 * 16 15 14 18 18 C 1.34832 * 117.00129 * 5.57473 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.91721 * 18 17 16 20 20 C 1.38658 * 120.00237 * 174.64920 * 18 17 16 21 21 N 1.31560 * 119.99522 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00134 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47147 * 59.99870 * 22 20 18 24 24 H 1.48499 * 109.47191 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47186 * 299.99824 * 22 20 18 26 26 C 1.38877 * 119.86429 * 0.27305 * 16 15 14 27 27 C 1.38101 * 119.92783 * 359.49552 * 26 16 15 28 28 H 1.08998 * 109.46977 * 300.00232 * 1 2 3 29 29 H 1.09003 * 109.46980 * 59.99318 * 1 2 3 30 30 H 1.09000 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47034 * 240.00015 * 2 1 3 32 32 H 1.09000 * 109.47117 * 305.01763 * 3 2 1 33 33 H 1.09003 * 109.46875 * 65.01186 * 3 2 1 34 34 H 1.09000 * 109.47569 * 185.01389 * 3 2 1 35 35 H 1.09008 * 109.47124 * 54.45226 * 4 2 1 36 36 H 1.09000 * 109.46806 * 294.45517 * 4 2 1 37 37 H 1.08997 * 109.51009 * 63.28023 * 7 5 4 38 38 H 1.08999 * 109.54251 * 303.17172 * 7 5 4 39 39 H 1.09004 * 109.50807 * 181.39461 * 9 8 7 40 40 H 1.08999 * 109.54174 * 61.28838 * 9 8 7 41 41 H 1.08995 * 109.50605 * 296.91498 * 10 9 8 42 42 H 1.09000 * 109.50862 * 176.78546 * 10 9 8 43 43 H 1.09000 * 109.47400 * 180.34944 * 12 11 5 44 44 H 1.09003 * 109.46840 * 60.34826 * 12 11 5 45 45 H 1.07994 * 119.96126 * 359.97438 * 14 13 12 46 46 H 1.07997 * 120.03349 * 179.97438 * 15 14 13 47 47 H 0.97004 * 119.99620 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.03536 * 179.72272 * 26 16 15 49 49 H 1.08000 * 119.96099 * 180.22899 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5636 -0.8432 1.1815 6 1 4.0053 0.1495 1.0950 7 6 3.9555 -1.6849 -0.0358 8 8 5.3750 -1.8583 -0.0522 9 6 5.8912 -2.4919 1.1215 10 6 5.5188 -1.6584 2.3506 11 7 4.0586 -1.4961 2.4021 12 6 3.6541 -0.7485 3.6002 13 6 4.2114 0.6500 3.5316 14 6 3.4296 1.6814 3.0440 15 6 3.9377 2.9638 2.9795 16 6 5.2351 3.2174 3.4053 17 8 5.7372 4.4771 3.3436 18 6 4.8896 5.4563 2.9685 19 1 3.8858 5.2106 2.6545 20 6 5.3047 6.7791 2.9911 21 7 6.5256 7.0787 3.3792 22 14 4.1306 8.1355 2.4708 23 1 2.9347 8.1197 3.3510 24 1 4.8114 9.4503 2.5851 25 1 3.7122 7.9150 1.0631 26 6 6.0194 2.1786 3.8896 27 6 5.5039 0.8992 3.9561 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6053 1.9816 -0.8416 33 1 1.7520 1.9297 0.9315 34 1 3.1264 1.4437 -0.0898 35 1 1.5978 -1.7164 1.3002 36 1 1.7600 -0.1534 2.1364 37 1 3.6405 -1.1761 -0.9468 38 1 3.4705 -2.6592 0.0232 39 1 6.9761 -2.5668 1.0475 40 1 5.4631 -3.4899 1.2152 41 1 5.9917 -0.6788 2.2828 42 1 5.8607 -2.1667 3.2522 43 1 4.0385 -1.2498 4.4884 44 1 2.5661 -0.7039 3.6504 45 1 2.4210 1.4834 2.7127 46 1 3.3269 3.7687 2.5983 47 1 6.8159 8.0041 3.3954 48 1 7.0302 2.3719 4.2173 49 1 6.1121 0.0917 4.3361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265030883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:23 Heat of formation + Delta-G solvation = -52.358926 kcal Electronic energy + Delta-G solvation = -28437.519390 eV Core-core repulsion = 24751.017738 eV Total energy + Delta-G solvation = -3686.501652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.33321 -38.85315 -37.11215 -36.51491 -34.98542 -32.33023 -31.45851 -30.38099 -30.04614 -27.59936 -27.10277 -26.49308 -25.34941 -23.86741 -23.00964 -21.86819 -20.85931 -20.35056 -19.18733 -18.01792 -17.05336 -16.38205 -16.28683 -15.62286 -15.19800 -14.91106 -14.77020 -14.55616 -14.46515 -14.18514 -13.74245 -13.55362 -13.46991 -13.37802 -13.10612 -12.85542 -12.54013 -12.25687 -12.15689 -11.96334 -11.77413 -11.63494 -11.42214 -11.29204 -11.09131 -11.06280 -10.88106 -10.78069 -10.65719 -10.54043 -10.47712 -10.40365 -10.24103 -9.53219 -9.34248 -8.85707 -8.24076 -8.18235 -7.22171 -6.48417 -4.07431 2.16334 2.23896 3.10564 3.11346 3.14415 3.84027 3.93225 3.94833 4.52241 4.72696 4.82964 4.90006 4.96067 5.05432 5.10188 5.12586 5.22818 5.26500 5.33120 5.40597 5.46027 5.49600 5.55904 5.59014 5.65626 5.66279 5.72174 5.79361 5.83995 5.87316 5.93968 5.97725 6.00266 6.05279 6.14813 6.15609 6.22847 6.33029 6.40981 6.49206 6.65150 6.85361 6.97521 7.04187 7.09796 7.17253 7.22419 7.35396 7.40412 7.77772 7.96230 8.97000 9.66620 10.69380 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.004002 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.833627 B = 6994.967233 C = 8139.693095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.153 4.153 4 C -0.108 4.108 5 C 0.045 3.955 6 H 0.069 0.931 7 C 0.068 3.932 8 O -0.386 6.386 9 C 0.065 3.935 10 C 0.011 3.989 11 N -0.525 5.525 12 C 0.106 3.894 13 C -0.223 4.223 14 C -0.059 4.059 15 C -0.233 4.233 16 C 0.157 3.843 17 O -0.177 6.177 18 C -0.392 4.392 19 H 0.091 0.909 20 C 0.040 3.960 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.194 4.194 27 C -0.064 4.064 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.108 0.892 46 H 0.125 0.875 47 H 0.271 0.729 48 H 0.115 0.885 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.220 -16.832 -4.351 19.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.210 4.210 4 C -0.145 4.145 5 C -0.064 4.064 6 H 0.087 0.913 7 C -0.009 4.009 8 O -0.304 6.304 9 C -0.013 4.013 10 C -0.118 4.118 11 N -0.248 5.248 12 C -0.021 4.021 13 C -0.225 4.225 14 C -0.078 4.078 15 C -0.253 4.253 16 C 0.102 3.898 17 O -0.080 6.080 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.164 4.164 21 N -0.496 5.496 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.202 1.202 25 H -0.195 1.195 26 C -0.214 4.214 27 C -0.083 4.083 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.143 0.857 47 H 0.081 0.919 48 H 0.133 0.867 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.934 -16.944 -4.406 19.221 hybrid contribution -0.367 1.541 0.017 1.585 sum -8.301 -15.403 -4.389 18.039 Atomic orbital electron populations 1.21828 0.95293 1.01384 1.01789 1.21168 0.95568 0.96787 0.98100 1.21973 1.01613 0.95398 1.01990 1.21729 0.93727 1.00752 0.98338 1.22325 0.95845 0.97922 0.90287 0.91347 1.22770 0.81289 0.98945 0.97855 1.87988 1.21728 1.80815 1.39874 1.22649 0.98983 0.95191 0.84430 1.22855 0.89204 1.00783 0.98908 1.62709 1.11095 1.48654 1.02384 1.20983 0.99965 0.89062 0.92116 1.19887 0.96170 0.96007 1.10461 1.20725 0.98065 0.92107 0.96896 1.21126 0.97079 0.97377 1.09692 1.19397 0.91614 0.86607 0.92145 1.83980 1.37592 1.11578 1.74823 1.21267 0.95640 0.84657 1.45274 0.89166 1.25287 0.97052 0.97360 0.96729 1.70031 1.16526 1.19687 1.43387 0.85797 0.79269 0.79200 0.79286 1.19486 1.20217 1.19464 1.20197 1.00602 0.91704 1.08857 1.20492 0.94544 0.95117 0.98110 0.92676 0.92798 0.92913 0.91309 0.92955 0.92201 0.92195 0.91507 0.90950 0.88771 0.92862 0.88855 0.92825 0.92373 0.90120 0.90898 0.90460 0.87405 0.85735 0.91930 0.86699 0.87434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 2 C -0.10 -0.99 2.75 -90.62 -0.25 -1.24 16 3 C -0.15 -1.84 8.60 37.16 0.32 -1.52 16 4 C -0.11 -1.17 3.67 -26.73 -0.10 -1.27 16 5 C 0.04 0.57 1.32 -67.60 -0.09 0.48 16 6 H 0.07 1.08 4.95 -51.93 -0.26 0.82 16 7 C 0.07 0.82 5.90 37.21 0.22 1.04 16 8 O -0.39 -5.37 10.83 -35.23 -0.38 -5.75 16 9 C 0.06 0.75 7.01 37.21 0.26 1.01 16 10 C 0.01 0.13 4.78 -3.71 -0.02 0.12 16 11 N -0.52 -6.63 4.75 -227.78 -1.08 -7.71 16 12 C 0.11 1.39 5.18 -4.98 -0.03 1.36 16 13 C -0.22 -3.61 4.00 -104.57 -0.42 -4.03 16 14 C -0.06 -1.03 7.81 -39.61 -0.31 -1.34 16 15 C -0.23 -4.93 9.17 -39.40 -0.36 -5.30 16 16 C 0.16 3.74 6.65 -39.11 -0.26 3.48 16 17 O -0.18 -5.03 9.76 0.04 0.00 -5.02 16 18 C -0.39 -10.89 9.49 30.89 0.29 -10.60 16 19 H 0.09 2.31 5.20 -52.49 -0.27 2.04 16 20 C 0.04 1.10 5.49 -17.51 -0.10 1.01 16 21 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 22 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 26 C -0.19 -4.07 9.99 -39.40 -0.39 -4.47 16 27 C -0.06 -1.11 7.74 -39.61 -0.31 -1.41 16 28 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.66 6.29 -51.92 -0.33 0.34 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.77 6.40 -51.93 -0.33 0.43 16 34 H 0.06 0.83 6.79 -51.93 -0.35 0.47 16 35 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.07 0.84 4.29 -51.93 -0.22 0.62 16 37 H 0.09 1.05 6.54 -51.93 -0.34 0.71 16 38 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.87 5.96 -51.93 -0.31 0.56 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.89 8.11 -51.93 -0.42 0.47 16 44 H 0.08 0.96 6.15 -51.93 -0.32 0.64 16 45 H 0.11 1.64 4.45 -52.49 -0.23 1.40 16 46 H 0.12 2.67 5.64 -52.49 -0.30 2.37 16 47 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 49 H 0.11 1.59 7.60 -52.49 -0.40 1.19 16 LS Contribution 366.65 15.07 5.53 5.53 Total: -1.00 -30.08 366.65 -8.84 -38.92 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.45 Total: 6.72 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -1.19 Total: -23.64 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: -0.32 Total: -32.16 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.38 Total: -10.77 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.08 -8.84 -38.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265030883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.442 kcal (2) G-P(sol) polarization free energy of solvation -30.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds