Wall clock time and date at job start Tue Mar 31 2020 12:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47557 * 2 1 4 4 C 1.53000 * 109.46975 * 120.00408 * 2 1 3 5 5 C 1.52999 * 109.47160 * 174.45531 * 4 2 1 6 6 H 1.08997 * 109.54334 * 58.01328 * 5 4 2 7 7 C 1.53099 * 109.50470 * 297.90855 * 5 4 2 8 8 O 1.43018 * 109.25875 * 183.21486 * 7 5 4 9 9 C 1.43016 * 113.73586 * 58.66990 * 8 7 5 10 10 C 1.53099 * 109.26105 * 301.33147 * 9 8 7 11 11 N 1.47010 * 109.50811 * 178.12636 * 5 4 2 12 12 C 1.46898 * 111.00196 * 302.32675 * 11 5 4 13 13 C 1.50697 * 109.47016 * 300.35622 * 12 11 5 14 14 C 1.38307 * 119.93430 * 95.71723 * 13 12 11 15 15 C 1.38096 * 120.06766 * 180.02562 * 14 13 12 16 16 C 1.38879 * 119.93147 * 359.97438 * 15 14 13 17 17 O 1.35752 * 120.06758 * 180.02562 * 16 15 14 18 18 C 1.34832 * 117.00129 * 5.57473 * 17 16 15 19 19 H 1.08001 * 119.99783 * 354.91721 * 18 17 16 20 20 C 1.38658 * 120.00237 * 174.64920 * 18 17 16 21 21 N 1.31560 * 119.99522 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00134 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47147 * 59.99870 * 22 20 18 24 24 H 1.48499 * 109.47191 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47186 * 299.99824 * 22 20 18 26 26 C 1.38877 * 119.86429 * 0.27305 * 16 15 14 27 27 C 1.38101 * 119.92783 * 359.49552 * 26 16 15 28 28 H 1.08998 * 109.46977 * 300.00232 * 1 2 3 29 29 H 1.09003 * 109.46980 * 59.99318 * 1 2 3 30 30 H 1.09000 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47034 * 240.00015 * 2 1 3 32 32 H 1.09000 * 109.47117 * 305.01763 * 3 2 1 33 33 H 1.09003 * 109.46875 * 65.01186 * 3 2 1 34 34 H 1.09000 * 109.47569 * 185.01389 * 3 2 1 35 35 H 1.09008 * 109.47124 * 54.45226 * 4 2 1 36 36 H 1.09000 * 109.46806 * 294.45517 * 4 2 1 37 37 H 1.08997 * 109.51009 * 63.28023 * 7 5 4 38 38 H 1.08999 * 109.54251 * 303.17172 * 7 5 4 39 39 H 1.09004 * 109.50807 * 181.39461 * 9 8 7 40 40 H 1.08999 * 109.54174 * 61.28838 * 9 8 7 41 41 H 1.08995 * 109.50605 * 296.91498 * 10 9 8 42 42 H 1.09000 * 109.50862 * 176.78546 * 10 9 8 43 43 H 1.09000 * 109.47400 * 180.34944 * 12 11 5 44 44 H 1.09003 * 109.46840 * 60.34826 * 12 11 5 45 45 H 1.07994 * 119.96126 * 359.97438 * 14 13 12 46 46 H 1.07997 * 120.03349 * 179.97438 * 15 14 13 47 47 H 0.97004 * 119.99620 * 180.02562 * 21 20 18 48 48 H 1.07999 * 120.03536 * 179.72272 * 26 16 15 49 49 H 1.08000 * 119.96099 * 180.22899 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5636 -0.8432 1.1815 6 1 4.0053 0.1495 1.0950 7 6 3.9555 -1.6849 -0.0358 8 8 5.3750 -1.8583 -0.0522 9 6 5.8912 -2.4919 1.1215 10 6 5.5188 -1.6584 2.3506 11 7 4.0586 -1.4961 2.4021 12 6 3.6541 -0.7485 3.6002 13 6 4.2114 0.6500 3.5316 14 6 3.4296 1.6814 3.0440 15 6 3.9377 2.9638 2.9795 16 6 5.2351 3.2174 3.4053 17 8 5.7372 4.4771 3.3436 18 6 4.8896 5.4563 2.9685 19 1 3.8858 5.2106 2.6545 20 6 5.3047 6.7791 2.9911 21 7 6.5256 7.0787 3.3792 22 14 4.1306 8.1355 2.4708 23 1 2.9347 8.1197 3.3510 24 1 4.8114 9.4503 2.5851 25 1 3.7122 7.9150 1.0631 26 6 6.0194 2.1786 3.8896 27 6 5.5039 0.8992 3.9561 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.6053 1.9816 -0.8416 33 1 1.7520 1.9297 0.9315 34 1 3.1264 1.4437 -0.0898 35 1 1.5978 -1.7164 1.3002 36 1 1.7600 -0.1534 2.1364 37 1 3.6405 -1.1761 -0.9468 38 1 3.4705 -2.6592 0.0232 39 1 6.9761 -2.5668 1.0475 40 1 5.4631 -3.4899 1.2152 41 1 5.9917 -0.6788 2.2828 42 1 5.8607 -2.1667 3.2522 43 1 4.0385 -1.2498 4.4884 44 1 2.5661 -0.7039 3.6504 45 1 2.4210 1.4834 2.7127 46 1 3.3269 3.7687 2.5983 47 1 6.8159 8.0041 3.3954 48 1 7.0302 2.3719 4.2173 49 1 6.1121 0.0917 4.3361 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265030883.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:37:22 Heat of formation + Delta-G solvation = -71.510687 kcal Electronic energy + Delta-G solvation = -28438.349873 eV Core-core repulsion = 24751.017738 eV Total energy + Delta-G solvation = -3687.332135 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51372 -40.43548 -38.54478 -37.54862 -36.20567 -34.30359 -32.42585 -31.88867 -31.47555 -28.80536 -28.00990 -27.66847 -27.06527 -25.06841 -24.11311 -23.35734 -22.33042 -21.30144 -20.24691 -19.84476 -18.85688 -17.42645 -17.31395 -16.66210 -16.52747 -16.27692 -16.16302 -15.95711 -15.72345 -15.54771 -15.17620 -15.09442 -14.60291 -14.46772 -14.31970 -14.14710 -13.95051 -13.63412 -13.28389 -13.06542 -12.99910 -12.91313 -12.65364 -12.54264 -12.41405 -12.36554 -12.25982 -12.16849 -11.93670 -11.68815 -11.48737 -11.35917 -11.30764 -11.07640 -10.80167 -10.48374 -9.79042 -9.33990 -8.93240 -8.49855 -6.18250 0.55703 0.63893 1.31901 1.42517 1.48240 2.15024 2.72431 2.91415 2.99796 3.16460 3.48535 3.76768 3.91948 3.95531 4.05374 4.07852 4.10076 4.13549 4.22767 4.25786 4.33547 4.41739 4.53086 4.54493 4.55445 4.66404 4.76001 4.79115 4.82719 4.84697 4.86064 4.99476 5.00677 5.01555 5.06465 5.10051 5.12614 5.14737 5.21660 5.25845 5.38589 5.49210 5.52373 5.54920 5.69049 5.71558 5.99505 6.04172 6.08487 6.18815 6.24928 6.94624 7.75231 8.73123 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.004002 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.833627 B = 6994.967233 C = 8139.693095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.101 4.101 5 C 0.046 3.954 6 H 0.033 0.967 7 C 0.068 3.932 8 O -0.411 6.411 9 C 0.062 3.938 10 C 0.008 3.992 11 N -0.514 5.514 12 C 0.106 3.894 13 C -0.194 4.194 14 C -0.052 4.052 15 C -0.240 4.240 16 C 0.115 3.885 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.022 4.022 21 N -0.920 5.920 22 Si 1.016 2.984 23 H -0.257 1.257 24 H -0.270 1.270 25 H -0.258 1.258 26 C -0.209 4.209 27 C -0.055 4.055 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.035 0.965 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.029 0.971 42 H 0.104 0.896 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.136 0.864 46 H 0.114 0.886 47 H 0.273 0.727 48 H 0.108 0.892 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.851 -20.108 -4.603 23.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.208 4.208 4 C -0.139 4.139 5 C -0.062 4.062 6 H 0.051 0.949 7 C -0.009 4.009 8 O -0.330 6.330 9 C -0.014 4.014 10 C -0.120 4.120 11 N -0.237 5.237 12 C -0.021 4.021 13 C -0.197 4.197 14 C -0.070 4.070 15 C -0.259 4.259 16 C 0.064 3.936 17 O -0.139 6.139 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.219 4.219 21 N -0.558 5.558 22 Si 0.835 3.165 23 H -0.181 1.181 24 H -0.195 1.195 25 H -0.182 1.182 26 C -0.228 4.228 27 C -0.074 4.074 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.116 0.884 38 H 0.088 0.912 39 H 0.123 0.877 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.122 0.878 43 H 0.113 0.887 44 H 0.112 0.888 45 H 0.153 0.847 46 H 0.132 0.868 47 H 0.082 0.918 48 H 0.126 0.874 49 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -10.587 -20.290 -4.658 23.355 hybrid contribution 0.431 2.163 0.090 2.207 sum -10.156 -18.127 -4.568 21.275 Atomic orbital electron populations 1.21801 0.93917 1.02385 1.01894 1.21137 0.96596 0.95114 0.98262 1.21952 1.00061 0.97166 1.01660 1.21691 0.92270 1.01624 0.98286 1.22310 0.96925 0.96222 0.90771 0.94871 1.22856 0.80701 0.99651 0.97700 1.87963 1.22769 1.81256 1.41055 1.22798 0.99901 0.95499 0.83225 1.22941 0.88741 0.99737 1.00572 1.62769 1.11265 1.47655 1.02041 1.21158 1.01040 0.86553 0.93332 1.20445 0.95197 0.97693 1.06319 1.21006 0.99385 0.90763 0.95883 1.21188 0.96097 0.98869 1.09774 1.19940 0.93443 0.86023 0.94161 1.83942 1.39031 1.13211 1.77759 1.21747 0.96201 0.85371 1.45638 0.88304 1.26578 0.98984 0.99772 0.96582 1.70181 1.19028 1.20282 1.46341 0.84685 0.76950 0.75430 0.79405 1.18081 1.19492 1.18205 1.20439 1.00443 0.92733 1.09192 1.20873 0.95322 0.94287 0.96886 0.92924 0.92446 0.91437 0.90497 0.92417 0.93234 0.94617 0.89779 0.91484 0.88380 0.91172 0.87700 0.91103 0.95267 0.87807 0.88701 0.88763 0.84689 0.86777 0.91820 0.87361 0.83971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.19 71.98 0.66 -1.44 16 2 C -0.09 -1.64 2.75 -10.79 -0.03 -1.67 16 3 C -0.15 -3.53 8.60 71.98 0.62 -2.91 16 4 C -0.10 -1.86 3.67 30.59 0.11 -1.75 16 5 C 0.05 1.06 1.32 44.93 0.06 1.12 16 6 H 0.03 1.01 4.95 -2.39 -0.01 1.00 16 7 C 0.07 1.46 5.90 72.02 0.43 1.88 16 8 O -0.41 -10.66 10.83 -148.98 -1.61 -12.27 16 9 C 0.06 1.26 7.01 72.02 0.50 1.77 16 10 C 0.01 0.18 4.78 86.31 0.41 0.59 16 11 N -0.51 -11.07 4.75 -874.57 -4.15 -15.22 16 12 C 0.11 2.33 5.18 85.56 0.44 2.78 16 13 C -0.19 -5.85 4.00 -19.83 -0.08 -5.93 16 14 C -0.05 -1.76 7.81 22.25 0.17 -1.58 16 15 C -0.24 -10.49 9.17 22.39 0.21 -10.29 16 16 C 0.11 5.81 6.65 22.58 0.15 5.96 16 17 O -0.23 -14.28 9.76 -22.78 -0.22 -14.50 16 18 C -0.41 -24.42 9.49 67.92 0.64 -23.77 16 19 H 0.10 5.37 5.20 -2.91 -0.02 5.35 16 20 C -0.02 -1.24 5.49 84.83 0.47 -0.78 16 21 N -0.92 -57.14 13.67 21.61 0.30 -56.84 16 22 Si 1.02 43.26 29.55 68.60 2.03 45.29 16 23 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 26 C -0.21 -9.06 9.99 22.39 0.22 -8.83 16 27 C -0.06 -1.84 7.74 22.25 0.17 -1.67 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.08 1.27 6.29 -2.38 -0.01 1.26 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.23 6.40 -2.39 -0.02 1.21 16 34 H 0.03 0.99 6.79 -2.39 -0.02 0.97 16 35 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.07 1.31 4.29 -2.39 -0.01 1.30 16 37 H 0.10 1.99 6.54 -2.39 -0.02 1.97 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.03 0.81 5.96 -2.39 -0.01 0.80 16 42 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.80 8.11 -2.39 -0.02 1.78 16 44 H 0.09 1.86 6.15 -2.39 -0.01 1.84 16 45 H 0.14 3.83 4.45 -2.91 -0.01 3.82 16 46 H 0.11 5.14 5.64 -2.91 -0.02 5.12 16 47 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 49 H 0.14 3.76 7.60 -2.91 -0.02 3.74 16 Total: -1.00 -71.40 366.65 2.45 -68.95 By element: Atomic # 1 Polarization: 30.17 SS G_CDS: 0.95 Total: 31.12 kcal Atomic # 6 Polarization: -51.69 SS G_CDS: 5.16 Total: -46.53 kcal Atomic # 7 Polarization: -68.20 SS G_CDS: -3.85 Total: -72.06 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -1.84 Total: -26.77 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -71.40 2.45 -68.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265030883.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.563 kcal (2) G-P(sol) polarization free energy of solvation -71.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds