Wall clock time and date at job start Tue Mar 31 2020 12:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46918 * 2 1 4 4 C 1.53000 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46918 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47026 * 59.99950 * 3 2 1 7 7 C 1.52995 * 109.47102 * 60.00087 * 6 3 2 8 8 O 1.42901 * 109.47224 * 179.97438 * 7 6 3 9 9 C 1.53006 * 109.47220 * 299.99747 * 3 2 1 10 10 N 1.46496 * 109.47119 * 300.00166 * 9 3 2 11 11 C 1.34777 * 120.00061 * 179.97438 * 10 9 3 12 12 O 1.21546 * 119.99729 * 0.02562 * 11 10 9 13 13 C 1.47881 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.39924 * 120.02537 * 359.73022 * 13 11 10 15 15 C 1.38331 * 120.35880 * 179.73915 * 14 13 11 16 16 C 1.37756 * 120.40917 * 0.55784 * 15 14 13 17 17 C 1.40748 * 120.03940 * 359.70017 * 16 15 14 18 18 C 1.41443 * 120.17618 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99396 * 24.43795 * 18 17 16 20 20 C 1.39929 * 120.00242 * 204.43097 * 18 17 16 21 21 N 1.30831 * 119.99625 * 17.89746 * 20 18 17 22 22 Si 1.86797 * 120.00296 * 197.89270 * 20 18 17 23 23 H 1.48498 * 109.47171 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47242 * 120.00091 * 22 20 18 25 25 H 1.48500 * 109.47099 * 240.00107 * 22 20 18 26 26 C 1.38989 * 120.02751 * 180.02562 * 13 11 10 27 27 H 1.08998 * 109.47251 * 300.00069 * 1 2 3 28 28 H 1.09010 * 109.46816 * 60.00346 * 1 2 3 29 29 H 1.08994 * 109.46754 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47291 * 240.00558 * 2 1 3 31 31 H 1.08999 * 109.47231 * 119.99716 * 2 1 3 32 32 H 1.08999 * 109.47231 * 299.99716 * 4 3 2 33 33 H 1.08998 * 109.47251 * 59.99931 * 4 3 2 34 34 H 1.08994 * 109.46559 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46938 * 299.99896 * 5 4 3 36 36 H 1.09005 * 109.46866 * 59.99680 * 5 4 3 37 37 H 1.09001 * 109.46799 * 180.02562 * 6 3 2 38 38 H 1.08995 * 109.46814 * 299.99633 * 6 3 2 39 39 H 1.09007 * 109.46769 * 299.99902 * 7 6 3 40 40 H 1.09002 * 109.47421 * 59.99439 * 7 6 3 41 41 H 0.96691 * 113.99876 * 179.97438 * 8 7 6 42 42 H 1.08998 * 109.46644 * 59.99976 * 9 3 2 43 43 H 1.08994 * 109.47011 * 179.97438 * 9 3 2 44 44 H 0.97003 * 120.00114 * 359.97438 * 10 9 3 45 45 H 1.07997 * 119.81628 * 359.97438 * 14 13 11 46 46 H 1.07991 * 119.79376 * 180.28090 * 15 14 13 47 47 H 1.08000 * 119.97530 * 179.71778 * 16 15 14 48 48 H 0.97004 * 119.99702 * 180.02562 * 21 20 18 49 49 H 1.07997 * 120.20229 * 359.95694 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8852 0.0000 6 6 1.5299 2.1638 1.2493 7 6 2.0399 1.4426 2.4985 8 8 1.5641 2.1165 3.6653 9 6 1.5300 2.1638 -1.2493 10 7 2.0184 1.4732 -2.4454 11 6 1.6924 1.9334 -3.6696 12 8 0.9936 2.9216 -3.7811 13 6 2.1858 1.2366 -4.8770 14 6 2.9958 0.1028 -4.7492 15 6 3.4568 -0.5574 -5.8740 16 6 3.1334 -0.1001 -7.1325 17 6 2.3242 1.0419 -7.2809 18 6 1.9899 1.5137 -8.5717 19 1 1.9960 0.8359 -9.4126 20 6 1.6513 2.8583 -8.7593 21 7 1.9713 3.7460 -7.8529 22 14 0.7427 3.3861 -10.3036 23 1 0.4993 2.2007 -11.1643 24 1 -0.5565 3.9998 -9.9283 25 1 1.5623 4.3774 -11.0458 26 6 1.8504 1.7110 -6.1396 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.9337 0.9287 0.8891 33 1 3.9330 0.9289 -0.8908 34 1 5.1699 2.8851 0.0000 35 1 3.7162 3.3995 -0.8895 36 1 3.7169 3.3985 0.8905 37 1 1.8929 3.1916 1.2490 38 1 0.4400 2.1638 1.2492 39 1 1.6766 0.4149 2.4984 40 1 3.1300 1.4426 2.4985 41 1 1.8491 1.7128 4.4963 42 1 0.4400 2.1638 -1.2493 43 1 1.8929 3.1916 -1.2491 44 1 2.5763 0.6848 -2.3564 45 1 3.2594 -0.2609 -3.7671 46 1 4.0777 -1.4342 -5.7648 47 1 3.5009 -0.6184 -8.0059 48 1 1.7362 4.6781 -7.9828 49 1 1.2288 2.5881 -6.2431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268570662.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:41 Heat of formation + Delta-G solvation = -93.094096 kcal Electronic energy + Delta-G solvation = -27414.210994 eV Core-core repulsion = 23725.942932 eV Total energy + Delta-G solvation = -3688.268062 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12335 -38.60993 -37.01328 -36.53278 -33.82300 -33.32040 -32.41425 -30.27875 -29.82652 -29.42972 -27.48210 -25.62305 -25.20032 -23.45752 -22.09965 -21.85648 -20.91755 -19.54581 -18.42309 -17.98628 -17.35227 -16.24415 -16.18186 -15.64243 -15.45433 -15.10270 -14.79306 -14.41878 -14.12213 -13.99078 -13.65148 -13.62951 -13.18595 -13.07455 -12.80922 -12.63325 -12.46958 -12.24288 -12.07555 -11.88072 -11.65993 -11.61128 -11.57568 -11.16235 -11.08122 -11.01248 -10.73708 -10.58777 -10.54430 -10.48180 -10.26728 -10.05075 -10.01075 -9.68450 -9.21656 -8.98971 -8.56906 -7.61917 -7.51653 -6.79980 -4.41058 2.23086 2.81109 3.08250 3.13047 3.15226 3.61073 3.89442 3.92915 4.07677 4.45664 4.54326 4.63530 4.65206 4.87332 5.07589 5.10705 5.16094 5.22852 5.35554 5.38119 5.46087 5.54793 5.61183 5.64421 5.72368 5.75537 5.84061 5.87228 5.96322 5.96883 6.01297 6.09906 6.11650 6.20767 6.22342 6.27173 6.41375 6.72552 6.90954 6.99600 7.03048 7.21778 7.33621 7.38845 7.70780 7.77177 7.93469 8.11987 8.20612 8.51427 8.80800 8.84058 8.99727 10.14641 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002842 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.795644 B = 9849.075388 C =10253.405716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.117 4.117 3 C -0.065 4.065 4 C -0.117 4.117 5 C -0.159 4.159 6 C -0.110 4.110 7 C 0.074 3.926 8 O -0.576 6.576 9 C 0.130 3.870 10 N -0.732 5.732 11 C 0.563 3.437 12 O -0.547 6.547 13 C -0.127 4.127 14 C -0.218 4.218 15 C -0.098 4.098 16 C -0.213 4.213 17 C 0.098 3.902 18 C -0.459 4.459 19 H 0.081 0.919 20 C 0.073 3.927 21 N -0.782 5.782 22 Si 0.909 3.091 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.093 4.093 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.048 0.952 40 H 0.048 0.952 41 H 0.377 0.623 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.397 0.603 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.284 0.716 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.654 -5.331 17.992 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.155 4.155 3 C -0.066 4.066 4 C -0.155 4.155 5 C -0.216 4.216 6 C -0.148 4.148 7 C -0.004 4.004 8 O -0.382 6.382 9 C 0.006 3.994 10 N -0.387 5.387 11 C 0.353 3.647 12 O -0.425 6.425 13 C -0.130 4.130 14 C -0.238 4.238 15 C -0.116 4.116 16 C -0.233 4.233 17 C 0.096 3.904 18 C -0.488 4.488 19 H 0.099 0.901 20 C -0.146 4.146 21 N -0.407 5.407 22 Si 0.733 3.267 23 H -0.183 1.183 24 H -0.196 1.196 25 H -0.199 1.199 26 C -0.113 4.113 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.224 0.776 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.234 0.766 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.113 0.887 48 H 0.095 0.905 49 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.866 -3.955 17.504 17.966 hybrid contribution 0.307 -0.490 -0.184 0.606 sum 1.173 -4.444 17.320 17.919 Atomic orbital electron populations 1.21896 0.95519 1.01722 1.02410 1.21643 0.96545 0.95200 1.02072 1.20787 0.95735 0.95757 0.94301 1.21642 0.93811 0.97941 1.02064 1.21898 1.00751 0.96500 1.02425 1.21518 1.01889 1.00024 0.91388 1.22329 0.97564 0.95196 0.85286 1.86477 1.77767 1.57664 1.16255 1.21301 0.99082 0.96039 0.83001 1.45944 1.55007 1.32558 1.05160 1.18827 0.79117 0.83486 0.83265 1.90696 1.38370 1.26482 1.86979 1.19481 1.03163 0.97814 0.92560 1.20309 1.07548 0.99567 0.96392 1.20425 0.99735 0.98360 0.93085 1.21090 1.04609 1.02156 0.95411 1.17610 0.88875 0.90674 0.93256 1.19618 1.40443 0.94214 0.94548 0.90059 1.25968 0.93775 0.96610 0.98274 1.69803 1.33648 1.03321 1.33878 0.86244 0.79793 0.79331 0.81303 1.18344 1.19550 1.19918 1.21639 0.99638 1.00512 0.89494 0.92470 0.91907 0.92825 0.91517 0.91770 0.91783 0.91514 0.92805 0.91861 0.92484 0.90593 0.90615 0.93368 0.93363 0.77649 0.91560 0.91519 0.76618 0.89445 0.88981 0.88667 0.90494 0.84853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.21 37.16 0.34 -1.22 16 2 C -0.12 -1.09 4.46 -26.73 -0.12 -1.21 16 3 C -0.07 -0.65 0.11 -154.50 -0.02 -0.67 16 4 C -0.12 -1.11 4.46 -26.73 -0.12 -1.23 16 5 C -0.16 -1.62 9.21 37.16 0.34 -1.28 16 6 C -0.11 -1.06 3.93 -26.73 -0.11 -1.16 16 7 C 0.07 0.59 6.34 37.15 0.24 0.83 16 8 O -0.58 -5.07 13.66 -35.23 -0.48 -5.55 16 9 C 0.13 1.78 3.86 -4.04 -0.02 1.77 16 10 N -0.73 -11.80 4.91 -61.24 -0.30 -12.10 16 11 C 0.56 12.24 7.77 -12.31 -0.10 12.14 16 12 O -0.55 -13.78 16.33 5.33 0.09 -13.70 16 13 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 14 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 15 C -0.10 -2.07 10.01 -39.72 -0.40 -2.47 16 16 C -0.21 -5.05 9.78 -38.81 -0.38 -5.43 16 17 C 0.10 2.61 5.57 -106.87 -0.60 2.01 16 18 C -0.46 -12.09 9.05 -37.73 -0.34 -12.44 16 19 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 20 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 21 N -0.78 -20.81 10.95 55.55 0.61 -20.20 16 22 Si 0.91 18.85 29.60 -169.99 -5.03 13.82 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 C -0.09 -2.48 8.24 -38.45 -0.32 -2.79 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 28 H 0.06 0.74 6.43 -51.92 -0.33 0.41 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.67 6.86 -51.93 -0.36 0.31 16 31 H 0.06 0.50 6.43 -51.93 -0.33 0.16 16 32 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 33 H 0.07 0.68 6.86 -51.93 -0.36 0.32 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.78 6.43 -51.93 -0.33 0.44 16 36 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 37 H 0.08 0.78 6.43 -51.93 -0.33 0.45 16 38 H 0.08 0.77 6.43 -51.93 -0.33 0.44 16 39 H 0.05 0.35 6.43 -51.93 -0.33 0.01 16 40 H 0.05 0.35 6.43 -51.93 -0.33 0.02 16 41 H 0.38 1.59 9.12 45.56 0.42 2.00 16 42 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 43 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 44 H 0.40 5.62 4.18 -40.82 -0.17 5.45 16 45 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 46 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 48 H 0.28 6.93 8.30 -40.82 -0.34 6.59 16 49 H 0.13 3.87 5.74 -52.49 -0.30 3.57 16 LS Contribution 374.22 15.07 5.64 5.64 Total: -1.00 -30.82 374.22 -8.49 -39.31 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.35 Total: 12.69 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.66 Total: -19.91 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.31 Total: -32.30 kcal Atomic # 8 Polarization: -18.86 SS G_CDS: -0.39 Total: -19.25 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.82 -8.49 -39.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268570662.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.782 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds