Wall clock time and date at job start Tue Mar 31 2020 12:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46918 * 2 1 4 4 C 1.53000 * 109.46918 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.46918 * 180.02562 * 4 3 2 6 6 C 1.53004 * 109.47026 * 59.99950 * 3 2 1 7 7 C 1.52995 * 109.47102 * 60.00087 * 6 3 2 8 8 O 1.42901 * 109.47224 * 179.97438 * 7 6 3 9 9 C 1.53006 * 109.47220 * 299.99747 * 3 2 1 10 10 N 1.46496 * 109.47119 * 300.00166 * 9 3 2 11 11 C 1.34777 * 120.00061 * 179.97438 * 10 9 3 12 12 O 1.21546 * 119.99729 * 0.02562 * 11 10 9 13 13 C 1.47881 * 120.00167 * 179.97438 * 11 10 9 14 14 C 1.39924 * 120.02537 * 359.73022 * 13 11 10 15 15 C 1.38331 * 120.35880 * 179.73915 * 14 13 11 16 16 C 1.37756 * 120.40917 * 0.55784 * 15 14 13 17 17 C 1.40748 * 120.03940 * 359.70017 * 16 15 14 18 18 C 1.41443 * 120.17618 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99396 * 24.43795 * 18 17 16 20 20 C 1.39929 * 120.00242 * 204.43097 * 18 17 16 21 21 N 1.30831 * 119.99625 * 17.89746 * 20 18 17 22 22 Si 1.86797 * 120.00296 * 197.89270 * 20 18 17 23 23 H 1.48498 * 109.47171 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47242 * 120.00091 * 22 20 18 25 25 H 1.48500 * 109.47099 * 240.00107 * 22 20 18 26 26 C 1.38989 * 120.02751 * 180.02562 * 13 11 10 27 27 H 1.08998 * 109.47251 * 300.00069 * 1 2 3 28 28 H 1.09010 * 109.46816 * 60.00346 * 1 2 3 29 29 H 1.08994 * 109.46754 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47291 * 240.00558 * 2 1 3 31 31 H 1.08999 * 109.47231 * 119.99716 * 2 1 3 32 32 H 1.08999 * 109.47231 * 299.99716 * 4 3 2 33 33 H 1.08998 * 109.47251 * 59.99931 * 4 3 2 34 34 H 1.08994 * 109.46559 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.46938 * 299.99896 * 5 4 3 36 36 H 1.09005 * 109.46866 * 59.99680 * 5 4 3 37 37 H 1.09001 * 109.46799 * 180.02562 * 6 3 2 38 38 H 1.08995 * 109.46814 * 299.99633 * 6 3 2 39 39 H 1.09007 * 109.46769 * 299.99902 * 7 6 3 40 40 H 1.09002 * 109.47421 * 59.99439 * 7 6 3 41 41 H 0.96691 * 113.99876 * 179.97438 * 8 7 6 42 42 H 1.08998 * 109.46644 * 59.99976 * 9 3 2 43 43 H 1.08994 * 109.47011 * 179.97438 * 9 3 2 44 44 H 0.97003 * 120.00114 * 359.97438 * 10 9 3 45 45 H 1.07997 * 119.81628 * 359.97438 * 14 13 11 46 46 H 1.07991 * 119.79376 * 180.28090 * 15 14 13 47 47 H 1.08000 * 119.97530 * 179.71778 * 16 15 14 48 48 H 0.97004 * 119.99702 * 180.02562 * 21 20 18 49 49 H 1.07997 * 120.20229 * 359.95694 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8852 0.0000 6 6 1.5299 2.1638 1.2493 7 6 2.0399 1.4426 2.4985 8 8 1.5641 2.1165 3.6653 9 6 1.5300 2.1638 -1.2493 10 7 2.0184 1.4732 -2.4454 11 6 1.6924 1.9334 -3.6696 12 8 0.9936 2.9216 -3.7811 13 6 2.1858 1.2366 -4.8770 14 6 2.9958 0.1028 -4.7492 15 6 3.4568 -0.5574 -5.8740 16 6 3.1334 -0.1001 -7.1325 17 6 2.3242 1.0419 -7.2809 18 6 1.9899 1.5137 -8.5717 19 1 1.9960 0.8359 -9.4126 20 6 1.6513 2.8583 -8.7593 21 7 1.9713 3.7460 -7.8529 22 14 0.7427 3.3861 -10.3036 23 1 0.4993 2.2007 -11.1643 24 1 -0.5565 3.9998 -9.9283 25 1 1.5623 4.3774 -11.0458 26 6 1.8504 1.7110 -6.1396 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3632 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8900 32 1 3.9337 0.9287 0.8891 33 1 3.9330 0.9289 -0.8908 34 1 5.1699 2.8851 0.0000 35 1 3.7162 3.3995 -0.8895 36 1 3.7169 3.3985 0.8905 37 1 1.8929 3.1916 1.2490 38 1 0.4400 2.1638 1.2492 39 1 1.6766 0.4149 2.4984 40 1 3.1300 1.4426 2.4985 41 1 1.8491 1.7128 4.4963 42 1 0.4400 2.1638 -1.2493 43 1 1.8929 3.1916 -1.2491 44 1 2.5763 0.6848 -2.3564 45 1 3.2594 -0.2609 -3.7671 46 1 4.0777 -1.4342 -5.7648 47 1 3.5009 -0.6184 -8.0059 48 1 1.7362 4.6781 -7.9828 49 1 1.2288 2.5881 -6.2431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268570662.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:11:40 Heat of formation + Delta-G solvation = -113.425870 kcal Electronic energy + Delta-G solvation = -27415.092646 eV Core-core repulsion = 23725.942932 eV Total energy + Delta-G solvation = -3689.149713 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.34968 -40.00917 -38.70720 -37.34007 -35.65222 -34.81887 -33.19656 -32.05417 -31.27474 -30.58824 -28.65021 -27.17425 -26.41924 -24.65017 -23.23241 -22.86958 -22.73812 -21.21056 -19.70447 -19.13772 -18.40616 -17.72498 -17.11652 -17.07094 -16.69384 -16.59159 -16.39896 -15.68416 -15.43073 -15.18125 -15.00821 -14.67376 -14.55667 -14.37220 -14.24846 -13.88357 -13.58157 -13.51144 -13.19334 -13.14429 -12.94058 -12.79621 -12.65650 -12.54178 -12.42137 -12.30674 -12.18142 -11.89815 -11.80072 -11.50992 -11.38791 -11.34429 -11.10254 -11.08541 -10.77369 -10.66146 -10.08385 -9.46267 -9.38025 -8.67314 -6.38479 0.38976 1.00337 1.35472 1.45947 1.51828 2.11265 2.18593 2.25715 2.78692 3.33111 3.61502 3.69467 3.73474 3.86214 4.05153 4.14905 4.32215 4.40501 4.42773 4.44379 4.51284 4.58064 4.58326 4.61728 4.62088 4.65134 4.78560 4.89511 4.90898 5.01782 5.08287 5.09402 5.11723 5.18060 5.19785 5.23278 5.31460 5.31890 5.38698 5.40508 5.48419 5.52699 5.59265 5.86879 5.92802 6.05631 6.28812 6.51866 6.69996 6.87686 6.94799 6.96777 7.33512 8.29462 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021620 B = 0.002842 C = 0.002730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1294.795644 B = 9849.075388 C =10253.405716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.115 4.115 3 C -0.051 4.051 4 C -0.116 4.116 5 C -0.158 4.158 6 C -0.110 4.110 7 C 0.077 3.923 8 O -0.599 6.599 9 C 0.128 3.872 10 N -0.703 5.703 11 C 0.558 3.442 12 O -0.593 6.593 13 C -0.138 4.138 14 C -0.196 4.196 15 C -0.095 4.095 16 C -0.217 4.217 17 C 0.067 3.933 18 C -0.496 4.496 19 H 0.084 0.916 20 C 0.028 3.972 21 N -0.825 5.825 22 Si 0.982 3.018 23 H -0.250 1.250 24 H -0.271 1.271 25 H -0.264 1.264 26 C -0.132 4.132 27 H 0.062 0.938 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.033 0.967 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.397 0.603 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.411 0.589 45 H 0.135 0.865 46 H 0.140 0.860 47 H 0.108 0.892 48 H 0.286 0.714 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.139 -8.063 20.174 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.153 4.153 3 C -0.052 4.052 4 C -0.153 4.153 5 C -0.215 4.215 6 C -0.148 4.148 7 C 0.000 4.000 8 O -0.407 6.407 9 C 0.004 3.996 10 N -0.357 5.357 11 C 0.348 3.652 12 O -0.475 6.475 13 C -0.141 4.141 14 C -0.216 4.216 15 C -0.113 4.113 16 C -0.237 4.237 17 C 0.064 3.936 18 C -0.526 4.526 19 H 0.102 0.898 20 C -0.187 4.187 21 N -0.451 5.451 22 Si 0.803 3.197 23 H -0.174 1.174 24 H -0.197 1.197 25 H -0.188 1.188 26 C -0.153 4.153 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.247 0.753 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.250 0.750 45 H 0.153 0.847 46 H 0.158 0.842 47 H 0.127 0.873 48 H 0.096 0.904 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.389 -6.742 19.739 20.995 hybrid contribution -0.094 0.260 -0.649 0.705 sum 2.295 -6.482 19.091 20.291 Atomic orbital electron populations 1.21882 0.96225 1.02009 1.01395 1.21676 0.95873 0.94362 1.03360 1.20673 0.96343 0.95967 0.92196 1.21676 0.92813 0.97458 1.03338 1.21884 1.01279 0.97034 1.01352 1.21477 1.01325 0.99735 0.92278 1.22295 0.98230 0.95282 0.84171 1.86425 1.78248 1.58567 1.17488 1.21461 0.98518 0.95884 0.83723 1.45688 1.53596 1.32272 1.04115 1.18755 0.78929 0.82997 0.84528 1.90671 1.40569 1.28508 1.87722 1.19784 1.03352 0.98764 0.92196 1.20817 1.04582 0.97377 0.98783 1.20924 0.99196 0.99343 0.91794 1.21409 1.03724 1.01129 0.97443 1.17955 0.90076 0.92137 0.93403 1.19885 1.42720 0.95069 0.94904 0.89786 1.26864 0.93983 0.96308 1.01496 1.69905 1.35375 1.03630 1.36168 0.85159 0.78164 0.79148 0.77274 1.17354 1.19653 1.18824 1.21438 1.01565 1.00869 0.91415 0.91882 0.94613 0.91853 0.91698 0.88915 0.88879 0.91761 0.91950 0.94748 0.91835 0.91736 0.91612 0.91880 0.91981 0.75345 0.92723 0.92982 0.75014 0.84720 0.84247 0.87349 0.90379 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.21 71.98 0.66 -2.17 16 2 C -0.12 -1.76 4.46 30.60 0.14 -1.63 16 3 C -0.05 -0.92 0.11 -52.18 -0.01 -0.92 16 4 C -0.12 -1.82 4.46 30.60 0.14 -1.68 16 5 C -0.16 -2.99 9.21 71.98 0.66 -2.32 16 6 C -0.11 -1.92 3.93 30.59 0.12 -1.80 16 7 C 0.08 0.98 6.34 71.98 0.46 1.44 16 8 O -0.60 -8.92 13.66 -148.98 -2.04 -10.96 16 9 C 0.13 3.51 3.86 86.38 0.33 3.85 16 10 N -0.70 -22.19 4.91 -465.95 -2.29 -24.48 16 11 C 0.56 24.91 7.77 86.80 0.67 25.59 16 12 O -0.59 -31.72 16.33 -3.86 -0.06 -31.78 16 13 C -0.14 -6.56 5.87 -20.14 -0.12 -6.68 16 14 C -0.20 -7.62 9.55 22.70 0.22 -7.40 16 15 C -0.09 -3.71 10.01 22.18 0.22 -3.49 16 16 C -0.22 -10.15 9.78 22.77 0.22 -9.93 16 17 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 18 C -0.50 -27.33 9.05 23.47 0.21 -27.11 16 19 H 0.08 4.36 7.91 -2.91 -0.02 4.34 16 20 C 0.03 1.50 5.14 85.25 0.44 1.94 16 21 N -0.83 -46.81 10.95 21.82 0.24 -46.57 16 22 Si 0.98 40.25 29.60 68.60 2.03 42.28 16 23 H -0.25 -9.74 7.11 99.48 0.71 -9.03 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 26 C -0.13 -7.45 8.24 23.01 0.19 -7.26 16 27 H 0.06 1.05 6.43 -2.39 -0.02 1.03 16 28 H 0.03 0.83 6.43 -2.38 -0.02 0.81 16 29 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.04 6.86 -2.38 -0.02 1.02 16 31 H 0.09 0.96 6.43 -2.39 -0.02 0.95 16 32 H 0.09 1.00 6.43 -2.39 -0.02 0.99 16 33 H 0.06 1.07 6.86 -2.39 -0.02 1.05 16 34 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.03 0.84 6.43 -2.39 -0.02 0.82 16 36 H 0.06 1.10 6.43 -2.38 -0.02 1.09 16 37 H 0.06 1.27 6.43 -2.39 -0.02 1.26 16 38 H 0.07 1.28 6.43 -2.39 -0.02 1.26 16 39 H 0.06 0.62 6.43 -2.38 -0.02 0.61 16 40 H 0.06 0.62 6.43 -2.39 -0.02 0.61 16 41 H 0.40 2.14 9.12 -74.06 -0.68 1.46 16 42 H 0.05 1.66 6.43 -2.39 -0.02 1.65 16 43 H 0.05 1.62 6.43 -2.39 -0.02 1.60 16 44 H 0.41 10.50 4.18 -92.71 -0.39 10.12 16 45 H 0.14 3.92 6.38 -2.91 -0.02 3.90 16 46 H 0.14 4.19 8.06 -2.92 -0.02 4.17 16 47 H 0.11 4.67 8.06 -2.91 -0.02 4.64 16 48 H 0.29 14.93 8.30 -92.71 -0.77 14.16 16 49 H 0.10 6.11 5.74 -2.91 -0.02 6.10 16 Total: -1.00 -73.04 374.22 2.25 -70.79 By element: Atomic # 1 Polarization: 36.84 SS G_CDS: -0.07 Total: 36.77 kcal Atomic # 6 Polarization: -40.50 SS G_CDS: 4.44 Total: -36.06 kcal Atomic # 7 Polarization: -69.00 SS G_CDS: -2.05 Total: -71.05 kcal Atomic # 8 Polarization: -40.64 SS G_CDS: -2.10 Total: -42.74 kcal Atomic # 14 Polarization: 40.25 SS G_CDS: 2.03 Total: 42.28 kcal Total: -73.04 2.25 -70.79 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268570662.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -73.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds