Wall clock time and date at job start Tue Mar 31 2020 13:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47165 * 2 1 4 4 C 1.53005 * 109.46867 * 240.00201 * 2 1 3 5 5 H 1.08997 * 109.46925 * 322.03491 * 4 2 1 6 6 O 1.42901 * 109.47306 * 82.04099 * 4 2 1 7 7 C 1.53003 * 109.46670 * 202.03878 * 4 2 1 8 8 C 1.52994 * 109.47322 * 300.13341 * 7 4 2 9 9 C 1.53004 * 109.47358 * 60.13264 * 7 4 2 10 10 C 1.53000 * 109.46930 * 180.13054 * 7 4 2 11 11 N 1.46504 * 109.47214 * 179.97438 * 10 7 4 12 12 C 1.34776 * 120.00434 * 180.02562 * 11 10 7 13 13 O 1.21549 * 119.99537 * 0.02562 * 12 11 10 14 14 C 1.47882 * 120.00294 * 180.02562 * 12 11 10 15 15 C 1.39920 * 120.02320 * 359.72351 * 14 12 11 16 16 C 1.38331 * 120.35556 * 179.73976 * 15 14 12 17 17 C 1.37756 * 120.41286 * 0.56411 * 16 15 14 18 18 C 1.40752 * 120.03597 * 359.69626 * 17 16 15 19 19 C 1.41437 * 120.17432 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00345 * 26.74840 * 19 18 17 21 21 C 1.39937 * 119.99733 * 206.74716 * 19 18 17 22 22 N 1.30827 * 120.00323 * 19.30383 * 21 19 18 23 23 Si 1.86802 * 119.99955 * 199.30200 * 21 19 18 24 24 H 1.48500 * 109.47047 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47117 * 120.00093 * 23 21 19 26 26 H 1.48498 * 109.47133 * 240.00411 * 23 21 19 27 27 C 1.38996 * 120.02384 * 180.02562 * 14 12 11 28 28 H 1.08990 * 109.47242 * 295.78082 * 1 2 3 29 29 H 1.09001 * 109.47257 * 55.77874 * 1 2 3 30 30 H 1.09004 * 109.46893 * 175.77597 * 1 2 3 31 31 H 1.08994 * 109.46921 * 120.00277 * 2 1 3 32 32 H 1.08999 * 109.47266 * 56.89364 * 3 2 1 33 33 H 1.09001 * 109.46985 * 176.89960 * 3 2 1 34 34 H 1.09008 * 109.47170 * 296.89466 * 3 2 1 35 35 H 0.96704 * 114.00100 * 59.99964 * 6 4 2 36 36 H 1.08996 * 109.47444 * 75.45010 * 8 7 4 37 37 H 1.09004 * 109.47297 * 195.45861 * 8 7 4 38 38 H 1.09006 * 109.46944 * 315.45189 * 8 7 4 39 39 H 1.08999 * 109.46940 * 52.92448 * 9 7 4 40 40 H 1.09003 * 109.47259 * 172.91944 * 9 7 4 41 41 H 1.09003 * 109.46852 * 292.92632 * 9 7 4 42 42 H 1.09000 * 109.47345 * 299.99929 * 10 7 4 43 43 H 1.09006 * 109.46780 * 60.00274 * 10 7 4 44 44 H 0.97000 * 119.99759 * 0.02562 * 11 10 7 45 45 H 1.08003 * 119.82337 * 0.02562 * 15 14 12 46 46 H 1.07999 * 119.79454 * 180.27553 * 16 15 14 47 47 H 1.07992 * 119.97988 * 179.71643 * 17 16 15 48 48 H 0.96992 * 119.99985 * 179.97438 * 22 21 19 49 49 H 1.08004 * 120.20431 * 359.95676 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 1 1.3972 -1.5750 -1.4637 6 8 2.0228 0.1787 -2.3593 7 6 3.4706 -1.2076 -1.0091 8 6 4.3722 -0.0096 -0.7047 9 6 3.4885 -2.1737 0.1773 10 6 3.9818 -1.9259 -2.2595 11 7 5.3519 -2.3911 -2.0297 12 6 6.0100 -3.0549 -3.0007 13 8 5.4669 -3.2672 -4.0672 14 6 7.3928 -3.5249 -2.7685 15 6 8.0204 -3.2757 -1.5431 16 6 9.3118 -3.7169 -1.3166 17 6 9.9989 -4.3964 -2.2984 18 6 9.3857 -4.6515 -3.5394 19 6 10.0883 -5.3493 -4.5493 20 1 10.8699 -6.0449 -4.2814 21 6 9.7707 -5.1384 -5.8958 22 7 9.1206 -4.0609 -6.2536 23 14 10.2749 -6.3954 -7.1823 24 1 10.9931 -7.5164 -6.5243 25 1 9.0642 -6.9172 -7.8657 26 1 11.1678 -5.7523 -8.1794 27 6 8.0721 -4.2090 -3.7697 28 1 -0.3633 0.4469 0.9253 29 1 -0.3634 0.5779 -0.8497 30 1 -0.3633 -1.0249 -0.0757 31 1 1.8933 -0.5139 0.8899 32 1 1.6319 1.9722 0.8608 33 1 3.1286 1.4430 0.0556 34 1 1.7228 1.9400 -0.9166 35 1 2.5745 0.9636 -2.2378 36 1 4.1877 0.3349 0.3128 37 1 5.4164 -0.3060 -0.8043 38 1 4.1549 0.7961 -1.4060 39 1 2.7527 -2.9614 0.0154 40 1 4.4802 -2.6164 0.2704 41 1 3.2452 -1.6314 1.0910 42 1 3.3395 -2.7795 -2.4763 43 1 3.9691 -1.2376 -3.1046 44 1 5.7854 -2.2214 -1.1787 45 1 7.4922 -2.7400 -0.7681 46 1 9.7860 -3.5235 -0.3657 47 1 11.0084 -4.7336 -2.1157 48 1 8.9009 -3.9147 -7.1869 49 1 7.5930 -4.3999 -4.7187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270001083.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:28:29 Heat of formation + Delta-G solvation = -102.314643 kcal Electronic energy + Delta-G solvation = -27301.675364 eV Core-core repulsion = 23613.007469 eV Total energy + Delta-G solvation = -3688.667894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41046 -40.40840 -38.80218 -36.73434 -35.60007 -34.85833 -33.72737 -31.89504 -31.30023 -29.37819 -27.90968 -27.25945 -27.00396 -26.63749 -23.99609 -22.81163 -21.33305 -21.21022 -20.14860 -19.54540 -18.12192 -17.57096 -17.24386 -16.80246 -16.60541 -16.42460 -16.31040 -15.93435 -15.58359 -15.04718 -14.87689 -14.63938 -14.32482 -14.26579 -14.11265 -13.73662 -13.50411 -13.26302 -13.19193 -12.99914 -12.91641 -12.83065 -12.79158 -12.57979 -12.54132 -12.37587 -12.18982 -11.92556 -11.88966 -11.67910 -11.50706 -11.45272 -11.20570 -11.07702 -10.88805 -10.48463 -10.13223 -9.46686 -9.39468 -8.69233 -6.38714 0.36985 0.99038 1.35320 1.45315 1.51692 2.09335 2.18518 2.23948 2.77463 3.40735 3.63893 3.66530 3.68235 3.85587 4.00312 4.07684 4.11795 4.19924 4.39030 4.44828 4.56901 4.58090 4.64087 4.75371 4.79420 4.82406 4.87363 4.89665 4.96185 4.99452 5.04872 5.08156 5.08668 5.11533 5.17545 5.24654 5.29027 5.34291 5.40001 5.45942 5.50586 5.51651 5.55397 5.85336 5.91222 6.02890 6.27953 6.50485 6.67767 6.79208 6.87318 6.93575 7.30904 8.29598 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002689 C = 0.002519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.806769 B =10410.694873 C =11112.528167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.177 4.177 4 C 0.123 3.877 5 H 0.090 0.910 6 O -0.576 6.576 7 C -0.093 4.093 8 C -0.156 4.156 9 C -0.146 4.146 10 C 0.135 3.865 11 N -0.706 5.706 12 C 0.556 3.444 13 O -0.593 6.593 14 C -0.137 4.137 15 C -0.195 4.195 16 C -0.094 4.094 17 C -0.215 4.215 18 C 0.069 3.931 19 C -0.500 4.500 20 H 0.085 0.915 21 C 0.030 3.970 22 N -0.826 5.826 23 Si 0.980 3.020 24 H -0.250 1.250 25 H -0.272 1.272 26 H -0.263 1.263 27 C -0.131 4.131 28 H 0.064 0.936 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.380 0.620 36 H 0.096 0.904 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.412 0.588 45 H 0.136 0.864 46 H 0.141 0.859 47 H 0.109 0.891 48 H 0.286 0.714 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 9.829 16.084 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.140 4.140 3 C -0.233 4.233 4 C 0.064 3.936 5 H 0.107 0.893 6 O -0.385 6.385 7 C -0.094 4.094 8 C -0.213 4.213 9 C -0.203 4.203 10 C 0.011 3.989 11 N -0.360 5.360 12 C 0.346 3.654 13 O -0.475 6.475 14 C -0.141 4.141 15 C -0.214 4.214 16 C -0.112 4.112 17 C -0.235 4.235 18 C 0.067 3.933 19 C -0.529 4.529 20 H 0.103 0.897 21 C -0.185 4.185 22 N -0.452 5.452 23 Si 0.801 3.199 24 H -0.173 1.173 25 H -0.197 1.197 26 H -0.188 1.188 27 C -0.151 4.151 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.114 0.886 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.075 0.925 35 H 0.232 0.768 36 H 0.114 0.886 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.251 0.749 45 H 0.154 0.846 46 H 0.159 0.841 47 H 0.128 0.872 48 H 0.096 0.904 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.348 9.401 14.917 22.115 hybrid contribution 0.689 -0.168 -0.787 1.059 sum -12.659 9.234 14.131 21.099 Atomic orbital electron populations 1.21827 0.94914 1.01695 1.01839 1.21801 0.96418 0.97560 0.98206 1.22376 1.03350 0.95166 1.02450 1.22007 0.93280 0.91834 0.86482 0.89254 1.86591 1.72129 1.36972 1.42794 1.21403 0.97012 0.96839 0.94139 1.22312 0.99026 0.96639 1.03298 1.21987 1.02525 0.98744 0.97070 1.21276 0.81541 0.97620 0.98449 1.45778 1.15588 1.57391 1.17220 1.18805 0.86345 0.77012 0.83225 1.90676 1.70080 1.59050 1.27704 1.19767 0.93266 1.04045 0.96980 1.20828 0.96895 1.08006 0.95712 1.20944 0.94327 0.97287 0.98643 1.21434 0.99775 1.06597 0.95662 1.17941 0.91071 0.90820 0.93503 1.19857 1.18679 1.23245 0.91147 0.89730 1.26844 0.93081 0.96486 1.02067 1.69895 1.31088 1.24196 1.19991 0.85188 0.78806 0.78742 0.77184 1.17317 1.19739 1.18768 1.21327 0.94649 1.01472 0.97668 0.91728 0.93448 0.92861 0.88619 0.91739 0.89709 0.92546 0.76829 0.88565 0.92770 0.91814 0.92387 0.92390 0.89298 0.93478 0.93100 0.74872 0.84591 0.84105 0.87246 0.90360 0.89177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.12 71.98 0.66 -1.15 16 2 C -0.12 -1.41 2.47 -10.79 -0.03 -1.44 16 3 C -0.18 -1.73 7.87 71.98 0.57 -1.16 16 4 C 0.12 2.06 2.28 30.60 0.07 2.13 16 5 H 0.09 1.68 7.88 -2.39 -0.02 1.67 16 6 O -0.58 -11.72 12.12 -148.98 -1.81 -13.52 16 7 C -0.09 -1.61 0.39 -52.18 -0.02 -1.63 16 8 C -0.16 -2.19 6.72 71.98 0.48 -1.71 16 9 C -0.15 -2.11 7.91 71.98 0.57 -1.54 16 10 C 0.13 3.79 4.42 86.38 0.38 4.17 16 11 N -0.71 -22.43 4.68 -465.92 -2.18 -24.61 16 12 C 0.56 25.06 7.77 86.80 0.67 25.74 16 13 O -0.59 -32.17 16.33 -3.87 -0.06 -32.23 16 14 C -0.14 -6.55 5.87 -20.13 -0.12 -6.67 16 15 C -0.19 -7.53 9.55 22.70 0.22 -7.32 16 16 C -0.09 -3.66 10.01 22.18 0.22 -3.44 16 17 C -0.21 -10.01 9.78 22.77 0.22 -9.79 16 18 C 0.07 3.78 5.54 -21.32 -0.12 3.66 16 19 C -0.50 -27.55 9.03 23.47 0.21 -27.34 16 20 H 0.08 4.40 7.92 -2.91 -0.02 4.37 16 21 C 0.03 1.61 5.08 85.25 0.43 2.04 16 22 N -0.83 -47.03 11.20 21.82 0.24 -46.78 16 23 Si 0.98 40.40 29.60 68.60 2.03 42.43 16 24 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 27 C -0.13 -7.37 8.23 23.01 0.19 -7.18 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.05 0.67 8.04 -2.38 -0.02 0.65 16 31 H 0.10 0.89 5.75 -2.39 -0.01 0.88 16 32 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 0.69 3.97 -2.39 -0.01 0.68 16 34 H 0.06 0.62 6.63 -2.38 -0.02 0.60 16 35 H 0.38 5.83 5.15 -74.05 -0.38 5.44 16 36 H 0.10 0.88 5.98 -2.39 -0.01 0.86 16 37 H 0.05 0.89 6.57 -2.38 -0.02 0.88 16 38 H 0.06 0.85 5.57 -2.38 -0.01 0.84 16 39 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 0.91 6.69 -2.39 -0.02 0.90 16 41 H 0.09 0.84 6.27 -2.39 -0.01 0.82 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.66 7.68 -2.38 -0.02 1.64 16 44 H 0.41 10.44 4.23 -92.71 -0.39 10.04 16 45 H 0.14 3.90 6.38 -2.91 -0.02 3.88 16 46 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 47 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 48 H 0.29 15.00 8.30 -92.71 -0.77 14.23 16 49 H 0.09 5.71 5.97 -2.91 -0.02 5.69 16 Total: -1.00 -72.38 373.06 3.04 -69.33 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: 0.21 Total: 38.00 kcal Atomic # 6 Polarization: -37.22 SS G_CDS: 4.61 Total: -32.61 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.94 Total: -71.39 kcal Atomic # 8 Polarization: -43.89 SS G_CDS: -1.87 Total: -45.76 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -72.38 3.04 -69.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270001083.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.982 kcal (2) G-P(sol) polarization free energy of solvation -72.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds