Wall clock time and date at job start Tue Mar 31 2020 12:53:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53006 * 109.46840 * 128.86125 * 3 2 1 5 5 C 1.53001 * 109.46953 * 214.16613 * 4 3 2 6 6 N 1.46498 * 109.47299 * 248.86012 * 3 2 1 7 7 C 1.46497 * 119.99875 * 117.35709 * 6 3 2 8 8 C 1.52999 * 109.47386 * 264.23855 * 7 6 3 9 9 O 1.42900 * 109.47144 * 67.01473 * 8 7 6 10 10 C 1.42899 * 113.99618 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00242 * 297.35993 * 6 3 2 12 12 O 1.21588 * 119.99969 * 215.40653 * 11 6 3 13 13 C 1.47644 * 119.99913 * 35.40746 * 11 6 3 14 14 C 1.40007 * 119.89602 * 138.62527 * 13 11 6 15 15 C 1.36318 * 120.10657 * 180.27927 * 14 13 11 16 16 C 1.40889 * 119.89328 * 359.49137 * 15 14 13 17 17 C 1.41105 * 120.10745 * 180.23013 * 16 15 14 18 18 H 1.07993 * 120.00457 * 213.33131 * 17 16 15 19 19 C 1.40227 * 119.99757 * 33.33914 * 17 16 15 20 20 N 1.30655 * 119.99961 * 6.47080 * 19 17 16 21 21 Si 1.86800 * 120.00222 * 186.47566 * 19 17 16 22 22 H 1.48502 * 109.47021 * 89.99686 * 21 19 17 23 23 H 1.48499 * 109.47043 * 209.99686 * 21 19 17 24 24 H 1.48499 * 109.46947 * 329.99978 * 21 19 17 25 25 C 1.40894 * 119.78811 * 0.50813 * 16 15 14 26 26 C 1.36313 * 119.89182 * 359.75153 * 25 16 15 27 27 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46852 * 299.99327 * 1 2 3 29 29 H 1.08998 * 109.47231 * 59.99880 * 1 2 3 30 30 H 1.09006 * 109.46908 * 240.00739 * 2 1 3 31 31 H 1.08994 * 109.47541 * 120.00519 * 2 1 3 32 32 H 1.08998 * 109.47164 * 8.86638 * 3 2 1 33 33 H 1.08997 * 109.46858 * 334.17115 * 4 3 2 34 34 H 1.09000 * 109.47199 * 94.16876 * 4 3 2 35 35 H 1.09000 * 109.46952 * 60.00112 * 5 4 3 36 36 H 1.09001 * 109.46972 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47053 * 300.00233 * 5 4 3 38 38 H 1.09001 * 109.47161 * 24.24260 * 7 6 3 39 39 H 1.09005 * 109.47002 * 144.23685 * 7 6 3 40 40 H 1.09005 * 109.46891 * 187.01610 * 8 7 6 41 41 H 1.08996 * 109.47252 * 307.01299 * 8 7 6 42 42 H 1.09010 * 109.46731 * 180.02562 * 10 9 8 43 43 H 1.08994 * 109.47310 * 299.99819 * 10 9 8 44 44 H 1.08998 * 109.47372 * 60.00629 * 10 9 8 45 45 H 1.07998 * 119.95136 * 359.97438 * 14 13 11 46 46 H 1.08004 * 120.05802 * 179.74876 * 15 14 13 47 47 H 0.96999 * 119.99574 * 180.02562 * 20 19 17 48 48 H 1.08001 * 120.04887 * 179.73116 * 25 16 15 49 49 H 1.08003 * 119.94293 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.0634 1.6216 1.1233 5 6 2.9495 3.0357 1.6962 6 7 2.6724 1.7369 -1.2882 7 6 2.1149 2.7760 -2.1574 8 6 1.1887 2.1331 -3.1917 9 8 0.0413 1.5929 -2.5330 10 6 -0.8932 0.9663 -3.4140 11 6 3.7672 1.0518 -1.6738 12 8 4.6417 1.6100 -2.3078 13 6 3.9044 -0.3766 -1.3263 14 6 4.4074 -1.2794 -2.2708 15 6 4.5307 -2.6001 -1.9564 16 6 4.1610 -3.0543 -0.6750 17 6 4.2912 -4.4196 -0.3432 18 1 3.5845 -4.8814 0.3303 19 6 5.3384 -5.1766 -0.8878 20 7 6.2652 -4.5925 -1.5998 21 14 5.4084 -7.0203 -0.5954 22 1 4.6706 -7.7213 -1.6768 23 1 6.8244 -7.4675 -0.5918 24 1 4.7857 -7.3376 0.7149 25 6 3.6553 -2.1420 0.2721 26 6 3.5307 -0.8241 -0.0533 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.2038 2.1235 0.1584 33 1 2.8693 0.8936 1.9110 34 1 4.0676 1.4697 0.7276 35 1 1.9453 3.1876 2.0919 36 1 3.6782 3.1631 2.4967 37 1 3.1435 3.7636 0.9085 38 1 1.5494 3.4879 -1.5561 39 1 2.9254 3.2955 -2.6687 40 1 0.8724 2.8858 -3.9138 41 1 1.7204 1.3343 -3.7087 42 1 -1.7351 0.5828 -2.8375 43 1 -1.2527 1.6951 -4.1404 44 1 -0.4050 0.1434 -3.9360 45 1 4.6937 -0.9298 -3.2517 46 1 4.9150 -3.2965 -2.6870 47 1 6.9893 -5.1163 -1.9768 48 1 3.3665 -2.4863 1.2541 49 1 3.1428 -0.1241 0.6719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270295085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:48 Heat of formation + Delta-G solvation = 1.398823 kcal Electronic energy + Delta-G solvation = -28928.521448 eV Core-core repulsion = 25244.350907 eV Total energy + Delta-G solvation = -3684.170541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.60323 -37.85762 -37.18032 -36.62384 -33.95145 -33.16975 -31.72212 -30.25029 -29.58651 -29.20321 -26.48765 -25.99291 -25.51393 -23.10407 -22.23822 -22.03515 -21.04059 -20.21420 -18.26793 -17.21203 -16.67595 -16.44987 -16.04068 -15.65379 -15.28873 -14.98764 -14.64493 -14.35451 -14.00180 -13.58734 -13.48026 -13.45096 -13.15285 -12.68348 -12.47985 -12.38449 -12.22950 -11.92133 -11.85280 -11.81563 -11.66024 -11.46889 -11.34223 -11.22650 -11.14410 -10.98712 -10.92773 -10.66865 -10.43603 -10.18064 -9.87808 -9.73311 -9.57204 -9.29670 -9.07698 -8.93904 -8.00278 -7.51495 -7.10592 -6.80751 -4.51331 2.35645 2.98056 3.02199 3.05389 3.10542 3.46331 3.64390 3.82673 3.86045 4.59650 4.87662 5.10513 5.15439 5.19183 5.28267 5.33107 5.41541 5.43545 5.54830 5.55902 5.63810 5.65939 5.71110 5.75381 5.86494 5.95742 5.97987 6.05440 6.12006 6.17367 6.22961 6.30487 6.35061 6.45699 6.51457 6.80075 6.86171 6.89548 6.96629 7.14393 7.18378 7.20661 7.27441 7.55808 7.67665 7.87263 7.96610 8.10638 8.20756 8.54547 8.76906 8.85424 8.91481 10.11270 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.004026 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.514251 B = 6952.977357 C = 7190.901402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.160 4.160 3 C 0.161 3.839 4 C -0.151 4.151 5 C -0.147 4.147 6 N -0.633 5.633 7 C 0.127 3.873 8 C 0.042 3.958 9 O -0.376 6.376 10 C 0.031 3.969 11 C 0.591 3.409 12 O -0.552 6.552 13 C -0.287 4.287 14 C -0.045 4.045 15 C -0.176 4.176 16 C 0.135 3.865 17 C -0.456 4.456 18 H 0.080 0.920 19 C 0.072 3.928 20 N -0.789 5.789 21 Si 0.914 3.086 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.246 4.246 26 C -0.070 4.070 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.083 0.917 43 H 0.035 0.965 44 H 0.041 0.959 45 H 0.090 0.910 46 H 0.118 0.882 47 H 0.283 0.717 48 H 0.095 0.905 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.076 9.616 1.006 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.197 4.197 3 C 0.057 3.943 4 C -0.189 4.189 5 C -0.205 4.205 6 N -0.368 5.368 7 C 0.003 3.997 8 C -0.036 4.036 9 O -0.295 6.295 10 C -0.066 4.066 11 C 0.386 3.614 12 O -0.431 6.431 13 C -0.292 4.292 14 C -0.064 4.064 15 C -0.195 4.195 16 C 0.132 3.868 17 C -0.485 4.485 18 H 0.098 0.902 19 C -0.146 4.146 20 N -0.414 5.414 21 Si 0.738 3.262 22 H -0.193 1.193 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.266 4.266 26 C -0.087 4.087 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.127 0.873 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.059 0.941 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.094 0.906 48 H 0.113 0.887 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.387 9.878 0.733 14.353 hybrid contribution 0.136 -1.018 -0.293 1.068 sum -10.251 8.860 0.440 13.557 Atomic orbital electron populations 1.22144 0.96916 1.00945 1.01847 1.23397 0.94947 0.96099 1.05215 1.21171 0.94039 0.97301 0.81808 1.22426 1.00873 0.97332 0.98240 1.21805 1.01222 0.96890 1.00546 1.47595 1.30136 1.39091 1.19961 1.21323 0.95695 0.90048 0.92625 1.23125 0.87411 0.97484 0.95541 1.87888 1.32227 1.75706 1.33660 1.22681 0.92914 0.96478 0.94486 1.18645 0.79362 0.86617 0.76737 1.90634 1.38936 1.70618 1.42870 1.19006 1.20342 0.91474 0.98346 1.20360 0.95675 0.93484 0.96879 1.20956 1.06988 0.94215 0.97380 1.17758 0.86231 0.92803 0.89996 1.19720 1.10223 0.94444 1.24119 0.90176 1.26006 0.94649 1.01013 0.92963 1.69720 1.08922 1.37960 1.24815 0.86215 0.78311 0.81665 0.79991 1.19250 1.20158 1.18521 1.20687 1.13987 0.92978 0.98929 1.22033 0.93274 0.97251 0.96157 0.93672 0.94281 0.90657 0.87310 0.90112 0.89560 0.90444 0.90600 0.92871 0.92878 0.92860 0.90363 0.89193 0.93090 0.93057 0.89887 0.94652 0.94064 0.89216 0.86399 0.90617 0.88677 0.83847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.20 9.61 37.16 0.36 -1.84 16 2 C -0.16 -2.50 3.78 -26.73 -0.10 -2.60 16 3 C 0.16 2.32 2.47 -67.93 -0.17 2.16 16 4 C -0.15 -2.12 4.30 -26.73 -0.11 -2.23 16 5 C -0.15 -1.70 9.71 37.16 0.36 -1.34 16 6 N -0.63 -10.38 2.36 -167.28 -0.40 -10.77 16 7 C 0.13 1.72 5.98 -4.04 -0.02 1.70 16 8 C 0.04 0.54 6.23 37.16 0.23 0.77 16 9 O -0.38 -4.82 8.01 -35.23 -0.28 -5.11 16 10 C 0.03 0.32 10.66 101.05 1.08 1.40 16 11 C 0.59 12.28 5.64 -12.42 -0.07 12.21 16 12 O -0.55 -13.06 16.90 5.29 0.09 -12.97 16 13 C -0.29 -6.44 4.48 -104.73 -0.47 -6.91 16 14 C -0.04 -1.09 9.57 -39.61 -0.38 -1.47 16 15 C -0.18 -4.53 8.57 -39.27 -0.34 -4.87 16 16 C 0.14 3.46 5.51 -106.80 -0.59 2.87 16 17 C -0.46 -11.61 9.04 -37.75 -0.34 -11.95 16 18 H 0.08 1.94 7.86 -52.49 -0.41 1.53 16 19 C 0.07 1.76 5.30 -17.31 -0.09 1.67 16 20 N -0.79 -20.13 10.93 55.56 0.61 -19.52 16 21 Si 0.91 18.17 29.57 -169.99 -5.03 13.14 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 25 C -0.25 -5.67 9.48 -39.27 -0.37 -6.04 16 26 C -0.07 -1.45 4.61 -39.61 -0.18 -1.64 16 27 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.02 4.74 -51.93 -0.25 0.78 16 30 H 0.11 2.09 4.70 -51.93 -0.24 1.85 16 31 H 0.08 1.29 4.92 -51.93 -0.26 1.03 16 32 H 0.09 1.12 6.80 -51.93 -0.35 0.76 16 33 H 0.08 1.02 6.73 -51.93 -0.35 0.67 16 34 H 0.08 1.30 6.15 -51.93 -0.32 0.98 16 35 H 0.05 0.53 8.12 -51.93 -0.42 0.11 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.89 7.78 -51.93 -0.40 0.49 16 39 H 0.09 1.27 7.50 -51.93 -0.39 0.88 16 40 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.08 0.76 8.14 -51.92 -0.42 0.34 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 46 H 0.12 3.15 6.41 -52.48 -0.34 2.81 16 47 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 48 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 49 H 0.14 2.55 1.03 -60.34 -0.06 2.49 16 LS Contribution 374.47 15.07 5.64 5.64 Total: -1.00 -28.86 374.47 -8.16 -37.02 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -7.58 Total: 10.68 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: -1.21 Total: -18.11 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.21 Total: -30.30 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -0.19 Total: -18.07 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.86 -8.16 -37.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270295085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.420 kcal (2) G-P(sol) polarization free energy of solvation -28.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds