Wall clock time and date at job start Tue Mar 31 2020 12:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47075 * 2 1 4 4 C 1.53006 * 109.46840 * 128.86125 * 3 2 1 5 5 C 1.53001 * 109.46953 * 214.16613 * 4 3 2 6 6 N 1.46498 * 109.47299 * 248.86012 * 3 2 1 7 7 C 1.46497 * 119.99875 * 117.35709 * 6 3 2 8 8 C 1.52999 * 109.47386 * 264.23855 * 7 6 3 9 9 O 1.42900 * 109.47144 * 67.01473 * 8 7 6 10 10 C 1.42899 * 113.99618 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00242 * 297.35993 * 6 3 2 12 12 O 1.21588 * 119.99969 * 215.40653 * 11 6 3 13 13 C 1.47644 * 119.99913 * 35.40746 * 11 6 3 14 14 C 1.40007 * 119.89602 * 138.62527 * 13 11 6 15 15 C 1.36318 * 120.10657 * 180.27927 * 14 13 11 16 16 C 1.40889 * 119.89328 * 359.49137 * 15 14 13 17 17 C 1.41105 * 120.10745 * 180.23013 * 16 15 14 18 18 H 1.07993 * 120.00457 * 213.33131 * 17 16 15 19 19 C 1.40227 * 119.99757 * 33.33914 * 17 16 15 20 20 N 1.30655 * 119.99961 * 6.47080 * 19 17 16 21 21 Si 1.86800 * 120.00222 * 186.47566 * 19 17 16 22 22 H 1.48502 * 109.47021 * 89.99686 * 21 19 17 23 23 H 1.48499 * 109.47043 * 209.99686 * 21 19 17 24 24 H 1.48499 * 109.46947 * 329.99978 * 21 19 17 25 25 C 1.40894 * 119.78811 * 0.50813 * 16 15 14 26 26 C 1.36313 * 119.89182 * 359.75153 * 25 16 15 27 27 H 1.09004 * 109.47140 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46852 * 299.99327 * 1 2 3 29 29 H 1.08998 * 109.47231 * 59.99880 * 1 2 3 30 30 H 1.09006 * 109.46908 * 240.00739 * 2 1 3 31 31 H 1.08994 * 109.47541 * 120.00519 * 2 1 3 32 32 H 1.08998 * 109.47164 * 8.86638 * 3 2 1 33 33 H 1.08997 * 109.46858 * 334.17115 * 4 3 2 34 34 H 1.09000 * 109.47199 * 94.16876 * 4 3 2 35 35 H 1.09000 * 109.46952 * 60.00112 * 5 4 3 36 36 H 1.09001 * 109.46972 * 179.97438 * 5 4 3 37 37 H 1.08996 * 109.47053 * 300.00233 * 5 4 3 38 38 H 1.09001 * 109.47161 * 24.24260 * 7 6 3 39 39 H 1.09005 * 109.47002 * 144.23685 * 7 6 3 40 40 H 1.09005 * 109.46891 * 187.01610 * 8 7 6 41 41 H 1.08996 * 109.47252 * 307.01299 * 8 7 6 42 42 H 1.09010 * 109.46731 * 180.02562 * 10 9 8 43 43 H 1.08994 * 109.47310 * 299.99819 * 10 9 8 44 44 H 1.08998 * 109.47372 * 60.00629 * 10 9 8 45 45 H 1.07998 * 119.95136 * 359.97438 * 14 13 11 46 46 H 1.08004 * 120.05802 * 179.74876 * 15 14 13 47 47 H 0.96999 * 119.99574 * 180.02562 * 20 19 17 48 48 H 1.08001 * 120.04887 * 179.73116 * 25 16 15 49 49 H 1.08003 * 119.94293 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.0634 1.6216 1.1233 5 6 2.9495 3.0357 1.6962 6 7 2.6724 1.7369 -1.2882 7 6 2.1149 2.7760 -2.1574 8 6 1.1887 2.1331 -3.1917 9 8 0.0413 1.5929 -2.5330 10 6 -0.8932 0.9663 -3.4140 11 6 3.7672 1.0518 -1.6738 12 8 4.6417 1.6100 -2.3078 13 6 3.9044 -0.3766 -1.3263 14 6 4.4074 -1.2794 -2.2708 15 6 4.5307 -2.6001 -1.9564 16 6 4.1610 -3.0543 -0.6750 17 6 4.2912 -4.4196 -0.3432 18 1 3.5845 -4.8814 0.3303 19 6 5.3384 -5.1766 -0.8878 20 7 6.2652 -4.5925 -1.5998 21 14 5.4084 -7.0203 -0.5954 22 1 4.6706 -7.7213 -1.6768 23 1 6.8244 -7.4675 -0.5918 24 1 4.7857 -7.3376 0.7149 25 6 3.6553 -2.1420 0.2721 26 6 3.5307 -0.8241 -0.0533 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 1.2038 2.1235 0.1584 33 1 2.8693 0.8936 1.9110 34 1 4.0676 1.4697 0.7276 35 1 1.9453 3.1876 2.0919 36 1 3.6782 3.1631 2.4967 37 1 3.1435 3.7636 0.9085 38 1 1.5494 3.4879 -1.5561 39 1 2.9254 3.2955 -2.6687 40 1 0.8724 2.8858 -3.9138 41 1 1.7204 1.3343 -3.7087 42 1 -1.7351 0.5828 -2.8375 43 1 -1.2527 1.6951 -4.1404 44 1 -0.4050 0.1434 -3.9360 45 1 4.6937 -0.9298 -3.2517 46 1 4.9150 -3.2965 -2.6870 47 1 6.9893 -5.1163 -1.9768 48 1 3.3665 -2.4863 1.2541 49 1 3.1428 -0.1241 0.6719 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270295085.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:47 Heat of formation + Delta-G solvation = -13.667021 kcal Electronic energy + Delta-G solvation = -28929.174752 eV Core-core repulsion = 25244.350907 eV Total energy + Delta-G solvation = -3684.823845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.10961 -39.20155 -38.66444 -38.11201 -35.65747 -34.57618 -32.87837 -32.01725 -31.30295 -30.50221 -27.78661 -27.36552 -26.71054 -24.52822 -23.79517 -23.14050 -22.62072 -21.89218 -19.88670 -18.98922 -18.04058 -17.72875 -17.29419 -17.02632 -16.74979 -16.20847 -16.03386 -15.84061 -15.30256 -15.10987 -14.95596 -14.78365 -14.60144 -14.26310 -13.87935 -13.69778 -13.46519 -13.31494 -13.23070 -13.17602 -12.97467 -12.85771 -12.79035 -12.76580 -12.41095 -12.18097 -12.14880 -12.00215 -11.78989 -11.58548 -11.49431 -11.33585 -11.05737 -10.77451 -10.63838 -10.49195 -9.47010 -9.33593 -8.90837 -8.64068 -6.45618 0.54990 1.21035 1.37838 1.40692 1.52180 1.84384 2.18563 2.21297 2.75988 2.86693 3.65411 3.72718 3.93440 3.99279 4.12901 4.21300 4.24628 4.36714 4.39952 4.49637 4.51977 4.56368 4.58543 4.60752 4.66552 4.73402 4.81757 4.86599 4.90284 4.98738 5.00612 5.03804 5.09432 5.13519 5.21830 5.25001 5.32848 5.36464 5.42097 5.56327 5.66659 5.71382 5.82548 5.92571 6.02825 6.06207 6.25354 6.27933 6.58121 6.63130 6.85913 6.95799 7.28172 8.30412 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015177 B = 0.004026 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.514251 B = 6952.977357 C = 7190.901402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C 0.160 3.840 4 C -0.155 4.155 5 C -0.141 4.141 6 N -0.622 5.622 7 C 0.121 3.879 8 C 0.047 3.953 9 O -0.386 6.386 10 C 0.027 3.973 11 C 0.594 3.406 12 O -0.588 6.588 13 C -0.291 4.291 14 C -0.059 4.059 15 C -0.197 4.197 16 C 0.108 3.892 17 C -0.487 4.487 18 H 0.086 0.914 19 C 0.030 3.970 20 N -0.828 5.828 21 Si 0.989 3.011 22 H -0.262 1.262 23 H -0.270 1.270 24 H -0.253 1.253 25 C -0.257 4.257 26 C -0.052 4.052 27 H 0.038 0.962 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.118 0.882 33 H 0.090 0.910 34 H 0.042 0.958 35 H 0.078 0.922 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.019 0.981 42 H 0.098 0.902 43 H 0.055 0.945 44 H 0.026 0.974 45 H 0.083 0.917 46 H 0.097 0.903 47 H 0.288 0.712 48 H 0.111 0.889 49 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.513 11.025 2.884 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.196 4.196 3 C 0.057 3.943 4 C -0.193 4.193 5 C -0.198 4.198 6 N -0.355 5.355 7 C -0.001 4.001 8 C -0.031 4.031 9 O -0.305 6.305 10 C -0.069 4.069 11 C 0.389 3.611 12 O -0.469 6.469 13 C -0.296 4.296 14 C -0.078 4.078 15 C -0.217 4.217 16 C 0.105 3.895 17 C -0.516 4.516 18 H 0.104 0.896 19 C -0.185 4.185 20 N -0.453 5.453 21 Si 0.809 3.191 22 H -0.187 1.187 23 H -0.195 1.195 24 H -0.176 1.176 25 C -0.276 4.276 26 C -0.069 4.069 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.135 0.865 33 H 0.108 0.892 34 H 0.060 0.940 35 H 0.097 0.903 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.131 0.869 39 H 0.102 0.898 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.116 0.884 43 H 0.074 0.926 44 H 0.044 0.956 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.099 0.901 48 H 0.129 0.871 49 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -12.871 11.314 2.621 17.336 hybrid contribution 0.786 -1.305 -0.902 1.770 sum -12.086 10.009 1.719 15.786 Atomic orbital electron populations 1.22061 0.94727 1.01087 1.03203 1.23200 0.96949 0.96422 1.03065 1.21406 0.94923 0.97134 0.80857 1.22436 0.98612 0.99908 0.98334 1.21754 1.03020 0.94490 1.00523 1.47576 1.28596 1.38664 1.20701 1.21598 0.95921 0.89732 0.92888 1.23025 0.87311 0.97173 0.95561 1.87839 1.32254 1.75923 1.34474 1.22819 0.92631 0.96523 0.94909 1.18391 0.80319 0.86126 0.76306 1.90612 1.40583 1.71108 1.44642 1.19332 1.19158 0.92576 0.98514 1.20440 0.96394 0.93657 0.97351 1.20829 1.08782 0.94438 0.97652 1.18097 0.87102 0.93916 0.90356 1.20004 1.11251 0.94967 1.25416 0.89612 1.26931 0.93681 1.05789 0.92130 1.69811 1.09700 1.39965 1.25872 0.85090 0.78516 0.75293 0.80151 1.18669 1.19515 1.17618 1.20922 1.14037 0.93508 0.99181 1.22454 0.91180 0.97184 0.96085 0.94264 0.91683 0.90454 0.91181 0.90301 0.86451 0.89166 0.93951 0.90332 0.92253 0.93223 0.86895 0.89837 0.90049 0.96263 0.88399 0.92599 0.95566 0.89865 0.88466 0.90086 0.87079 0.80191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.61 71.98 0.69 -3.03 16 2 C -0.16 -4.69 3.78 30.60 0.12 -4.57 16 3 C 0.16 4.17 2.47 44.99 0.11 4.28 16 4 C -0.15 -3.95 4.30 30.60 0.13 -3.82 16 5 C -0.14 -2.71 9.71 71.98 0.70 -2.02 16 6 N -0.62 -19.61 2.36 -801.42 -1.89 -21.50 16 7 C 0.12 3.02 5.98 86.38 0.52 3.54 16 8 C 0.05 1.13 6.23 71.98 0.45 1.58 16 9 O -0.39 -8.93 8.01 -148.98 -1.19 -10.13 16 10 C 0.03 0.52 10.66 113.37 1.21 1.72 16 11 C 0.59 25.08 5.64 86.73 0.49 25.57 16 12 O -0.59 -28.60 16.90 -3.99 -0.07 -28.67 16 13 C -0.29 -13.53 4.48 -19.93 -0.09 -13.62 16 14 C -0.06 -3.07 9.57 22.25 0.21 -2.85 16 15 C -0.20 -10.88 8.57 22.47 0.19 -10.68 16 16 C 0.11 5.80 5.51 -21.28 -0.12 5.68 16 17 C -0.49 -25.68 9.04 23.46 0.21 -25.47 16 18 H 0.09 4.25 7.86 -2.91 -0.02 4.23 16 19 C 0.03 1.49 5.30 85.35 0.45 1.94 16 20 N -0.83 -44.15 10.93 21.87 0.24 -43.91 16 21 Si 0.99 37.73 29.57 68.60 2.03 39.76 16 22 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 23 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.25 -9.20 7.11 99.48 0.71 -8.49 16 25 C -0.26 -12.06 9.48 22.47 0.21 -11.85 16 26 C -0.05 -2.19 4.61 22.25 0.10 -2.09 16 27 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.86 4.74 -2.39 -0.01 1.85 16 30 H 0.07 2.68 4.70 -2.38 -0.01 2.67 16 31 H 0.08 2.35 4.92 -2.39 -0.01 2.34 16 32 H 0.12 2.44 6.80 -2.39 -0.02 2.43 16 33 H 0.09 2.08 6.73 -2.39 -0.02 2.06 16 34 H 0.04 1.39 6.15 -2.39 -0.01 1.38 16 35 H 0.08 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.11 2.08 7.78 -2.39 -0.02 2.07 16 39 H 0.08 2.24 7.50 -2.38 -0.02 2.22 16 40 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 41 H 0.02 0.58 8.14 -2.39 -0.02 0.56 16 42 H 0.10 1.54 8.14 -2.38 -0.02 1.53 16 43 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.08 4.28 8.06 -2.91 -0.02 4.26 16 46 H 0.10 5.64 6.41 -2.91 -0.02 5.62 16 47 H 0.29 13.98 8.29 -92.71 -0.77 13.21 16 48 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 49 H 0.18 6.20 1.03 -10.29 -0.01 6.19 16 Total: -1.00 -66.96 374.47 5.64 -61.31 By element: Atomic # 1 Polarization: 37.88 SS G_CDS: 0.94 Total: 38.83 kcal Atomic # 6 Polarization: -41.28 SS G_CDS: 5.59 Total: -35.69 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: -1.66 Total: -65.42 kcal Atomic # 8 Polarization: -37.53 SS G_CDS: -1.26 Total: -38.79 kcal Atomic # 14 Polarization: 37.73 SS G_CDS: 2.03 Total: 39.76 kcal Total: -66.96 5.64 -61.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270295085.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.647 kcal (2) G-P(sol) polarization free energy of solvation -66.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds