Wall clock time and date at job start Tue Mar 31 2020 12:41:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47317 * 2 1 4 4 C 1.52997 * 109.47513 * 239.99560 * 2 1 3 5 5 C 1.53003 * 109.47411 * 295.06865 * 4 2 1 6 6 H 1.08999 * 109.46588 * 321.39778 * 5 4 2 7 7 C 1.53000 * 109.47341 * 201.39738 * 5 4 2 8 8 C 1.52999 * 109.47062 * 66.37460 * 7 5 4 9 9 O 1.42906 * 109.47023 * 182.60914 * 8 7 5 10 10 C 1.53002 * 109.47012 * 81.39357 * 5 4 2 11 11 N 1.46496 * 109.47034 * 181.42879 * 10 5 4 12 12 C 1.34779 * 120.00332 * 180.02562 * 11 10 5 13 13 O 1.21588 * 119.99409 * 0.02562 * 12 11 10 14 14 C 1.47641 * 119.99902 * 180.02562 * 12 11 10 15 15 C 1.40007 * 119.89752 * 359.72103 * 14 12 11 16 16 C 1.36322 * 120.10317 * 179.75899 * 15 14 12 17 17 C 1.40882 * 119.89435 * 0.52022 * 16 15 14 18 18 C 1.41105 * 120.10429 * 179.71656 * 17 16 15 19 19 H 1.08007 * 119.99953 * 209.83788 * 18 17 16 20 20 C 1.40221 * 120.00297 * 29.83800 * 18 17 16 21 21 N 1.30648 * 120.00203 * 9.66783 * 20 18 17 22 22 Si 1.86803 * 120.00048 * 189.66875 * 20 18 17 23 23 H 1.48496 * 109.47143 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47034 * 120.00075 * 22 20 18 25 25 H 1.48504 * 109.47173 * 239.99434 * 22 20 18 26 26 C 1.40894 * 119.79323 * 359.73398 * 17 16 15 27 27 C 1.36320 * 119.89076 * 0.02562 * 26 17 16 28 28 H 1.09004 * 109.46931 * 197.35330 * 1 2 3 29 29 H 1.08994 * 109.47296 * 317.35402 * 1 2 3 30 30 H 1.09001 * 109.47226 * 77.35724 * 1 2 3 31 31 H 1.09008 * 109.47306 * 119.99730 * 2 1 3 32 32 H 1.08998 * 109.47132 * 59.99786 * 3 2 1 33 33 H 1.08996 * 109.47652 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.46821 * 300.00242 * 3 2 1 35 35 H 1.09000 * 109.46816 * 55.06516 * 4 2 1 36 36 H 1.08999 * 109.47629 * 175.06763 * 4 2 1 37 37 H 1.08994 * 109.46758 * 186.37749 * 7 5 4 38 38 H 1.09003 * 109.46683 * 306.37929 * 7 5 4 39 39 H 1.08999 * 109.47105 * 302.60558 * 8 7 5 40 40 H 1.08997 * 109.47038 * 62.60712 * 8 7 5 41 41 H 0.96694 * 113.99770 * 180.02562 * 9 8 7 42 42 H 1.08994 * 109.47142 * 301.42640 * 10 5 4 43 43 H 1.08995 * 109.46659 * 61.43048 * 10 5 4 44 44 H 0.97009 * 120.00280 * 0.02562 * 11 10 5 45 45 H 1.07998 * 119.94869 * 0.02562 * 15 14 12 46 46 H 1.08004 * 120.05402 * 180.23523 * 16 15 14 47 47 H 0.96990 * 120.00503 * 180.02562 * 21 20 18 48 48 H 1.07996 * 120.05178 * 179.97438 * 26 17 16 49 49 H 1.07995 * 119.94927 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.6339 -2.1952 -1.1886 6 1 1.7256 -2.5555 -0.1640 7 6 2.5489 -3.0143 -2.1012 8 6 3.9740 -2.9949 -1.5447 9 8 4.8404 -3.7088 -2.4289 10 6 0.1839 -2.3441 -1.6537 11 7 -0.2159 -3.7506 -1.5635 12 6 -1.4603 -4.1220 -1.9242 13 8 -2.2509 -3.2898 -2.3250 14 6 -1.8632 -5.5394 -1.8327 15 6 -0.9491 -6.4968 -1.3764 16 6 -1.3183 -7.8059 -1.2856 17 6 -2.6184 -8.1966 -1.6621 18 6 -3.0033 -9.5513 -1.5755 19 1 -3.7407 -9.9479 -2.2579 20 6 -2.4286 -10.3828 -0.6037 21 7 -1.6835 -9.8685 0.3383 22 14 -2.7281 -12.2259 -0.6558 23 1 -3.6002 -12.5532 -1.8122 24 1 -1.4307 -12.9345 -0.7974 25 1 -3.3918 -12.6553 0.6014 26 6 -3.5331 -7.2303 -2.1257 27 6 -3.1564 -5.9228 -2.2084 28 1 -0.3633 -0.9809 0.3065 29 1 -0.3633 0.7559 0.6962 30 1 -0.3634 0.2249 -1.0027 31 1 1.8933 -0.5138 0.8901 32 1 1.6766 1.9563 0.8899 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9562 -0.8900 35 1 1.6063 -0.2611 -2.1369 36 1 3.1264 -0.6454 -1.2944 37 1 2.1905 -4.0426 -2.1466 38 1 2.5439 -2.5831 -3.1023 39 1 4.3153 -1.9635 -1.4559 40 1 3.9870 -3.4678 -0.5628 41 1 5.7621 -3.7377 -2.1380 42 1 -0.4650 -1.7406 -1.0192 43 1 0.0973 -2.0074 -2.6867 44 1 0.4150 -4.4147 -1.2441 45 1 0.0486 -6.1970 -1.0919 46 1 -0.6137 -8.5432 -0.9299 47 1 -1.2857 -10.4436 1.0103 48 1 -4.5307 -7.5253 -2.4158 49 1 -3.8566 -5.1815 -2.5640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270379340.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:14 Heat of formation + Delta-G solvation = -117.903024 kcal Electronic energy + Delta-G solvation = -26609.965920 eV Core-core repulsion = 22920.622063 eV Total energy + Delta-G solvation = -3689.343857 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95342 -39.54938 -38.71043 -37.50325 -35.74659 -35.61963 -33.78037 -32.00864 -31.31260 -29.66630 -28.20394 -27.89562 -26.59972 -24.13012 -23.48989 -22.75360 -21.47023 -21.23056 -20.73607 -19.36100 -18.63738 -18.09888 -17.30428 -16.86814 -16.62806 -16.45733 -15.79001 -15.73146 -15.48002 -15.15891 -15.05999 -14.77648 -14.52167 -14.32020 -13.89196 -13.76806 -13.62039 -13.35840 -13.29747 -13.23673 -13.04463 -12.91683 -12.84792 -12.61045 -12.43818 -12.37700 -11.84325 -11.73483 -11.69050 -11.55361 -11.43759 -11.37217 -11.22490 -11.18306 -10.75658 -10.67336 -9.94734 -9.58184 -9.33685 -8.72689 -6.49952 0.42196 1.12817 1.39688 1.41763 1.55158 2.13621 2.19434 2.42887 2.81037 3.26547 3.66969 3.69603 3.79724 3.99293 4.11178 4.23023 4.25892 4.29281 4.30732 4.42151 4.43971 4.50197 4.53815 4.64530 4.75914 4.82969 4.88011 4.91494 4.93965 4.94707 5.01449 5.04873 5.10091 5.14477 5.15257 5.26725 5.29534 5.36113 5.41457 5.46398 5.56223 5.58657 5.63425 5.80664 5.93654 5.99581 6.23193 6.54958 6.70440 6.78719 6.88260 6.94388 7.44197 8.22226 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015383 B = 0.002698 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.803940 B =10374.707399 C =11419.027586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.106 4.106 5 C -0.082 4.082 6 H 0.089 0.911 7 C -0.119 4.119 8 C 0.075 3.925 9 O -0.600 6.600 10 C 0.106 3.894 11 N -0.723 5.723 12 C 0.569 3.431 13 O -0.605 6.605 14 C -0.286 4.286 15 C -0.057 4.057 16 C -0.189 4.189 17 C 0.102 3.898 18 C -0.477 4.477 19 H 0.083 0.917 20 C 0.034 3.966 21 N -0.810 5.810 22 Si 0.990 3.010 23 H -0.258 1.258 24 H -0.261 1.261 25 H -0.265 1.265 26 C -0.247 4.247 27 C -0.037 4.037 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.076 0.924 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.054 0.946 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.397 0.603 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.405 0.595 45 H 0.121 0.879 46 H 0.115 0.885 47 H 0.294 0.706 48 H 0.105 0.895 49 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.182 13.281 2.786 19.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.144 4.144 5 C -0.101 4.101 6 H 0.107 0.893 7 C -0.157 4.157 8 C -0.002 4.002 9 O -0.408 6.408 10 C -0.016 4.016 11 N -0.375 5.375 12 C 0.362 3.638 13 O -0.490 6.490 14 C -0.290 4.290 15 C -0.076 4.076 16 C -0.208 4.208 17 C 0.099 3.901 18 C -0.505 4.505 19 H 0.102 0.898 20 C -0.183 4.183 21 N -0.434 5.434 22 Si 0.810 3.190 23 H -0.181 1.181 24 H -0.185 1.185 25 H -0.190 1.190 26 C -0.267 4.267 27 C -0.056 4.056 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.075 0.925 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.073 0.927 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.246 0.754 42 H 0.103 0.897 43 H 0.066 0.934 44 H 0.242 0.758 45 H 0.139 0.861 46 H 0.133 0.867 47 H 0.105 0.895 48 H 0.123 0.877 49 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 13.250 13.769 2.401 19.259 hybrid contribution 0.214 -1.059 0.381 1.145 sum 13.464 12.710 2.782 18.724 Atomic orbital electron populations 1.22176 0.96423 1.01272 1.01640 1.21159 0.94894 0.96917 0.98243 1.21832 1.01370 0.95203 1.01836 1.21772 1.02043 0.92228 0.98328 1.21281 0.91559 0.97121 1.00096 0.89277 1.21561 0.94184 1.00267 0.99713 1.22302 0.89433 0.96183 0.92247 1.86456 1.24212 1.78132 1.52047 1.22062 0.96574 0.81696 1.01295 1.45857 1.13348 1.10564 1.67770 1.18396 0.81628 0.88150 0.75617 1.90610 1.53362 1.54430 1.50589 1.19267 0.97424 0.92239 1.20090 1.20729 0.97583 0.92899 0.96342 1.21061 0.96693 0.95535 1.07541 1.18164 0.91194 0.93583 0.87205 1.20089 1.21106 0.94618 1.14713 0.89843 1.26899 0.92250 1.06135 0.93029 1.69739 1.23645 1.39926 1.10102 0.85030 0.79486 0.74982 0.79510 1.18148 1.18520 1.18957 1.20937 0.99417 0.92884 1.13444 1.20527 0.94711 0.95343 0.95000 0.93067 0.92312 0.93092 0.90516 0.92502 0.91746 0.92907 0.91809 0.89427 0.92695 0.91995 0.91371 0.92650 0.75353 0.89701 0.93399 0.75831 0.86095 0.86697 0.89451 0.87654 0.87837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 7.57 71.98 0.54 -2.32 16 2 C -0.09 -1.31 2.86 -10.80 -0.03 -1.34 16 3 C -0.15 -1.70 9.12 71.98 0.66 -1.04 16 4 C -0.11 -1.53 4.33 30.59 0.13 -1.40 16 5 C -0.08 -1.50 1.78 -10.79 -0.02 -1.52 16 6 H 0.09 1.50 7.88 -2.39 -0.02 1.48 16 7 C -0.12 -2.39 4.96 30.59 0.15 -2.24 16 8 C 0.08 1.17 6.91 71.98 0.50 1.67 16 9 O -0.60 -11.14 13.66 -148.98 -2.04 -13.17 16 10 C 0.11 2.83 4.58 86.38 0.40 3.23 16 11 N -0.72 -23.62 5.15 -466.17 -2.40 -26.02 16 12 C 0.57 24.38 7.76 86.73 0.67 25.06 16 13 O -0.61 -29.29 16.32 -3.99 -0.07 -29.35 16 14 C -0.29 -13.28 5.89 -19.93 -0.12 -13.39 16 15 C -0.06 -2.52 9.47 22.25 0.21 -2.31 16 16 C -0.19 -9.49 8.59 22.47 0.19 -9.29 16 17 C 0.10 5.36 5.55 -21.28 -0.12 5.24 16 18 C -0.48 -24.50 9.05 23.46 0.21 -24.29 16 19 H 0.08 4.12 7.87 -2.91 -0.02 4.10 16 20 C 0.03 1.61 5.27 85.35 0.45 2.06 16 21 N -0.81 -39.34 10.84 21.87 0.24 -39.11 16 22 Si 0.99 35.61 29.57 68.60 2.03 37.64 16 23 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.23 16 25 H -0.26 -9.17 7.11 99.48 0.71 -8.47 16 26 C -0.25 -12.47 9.73 22.47 0.22 -12.25 16 27 C -0.04 -1.79 9.52 22.25 0.21 -1.58 16 28 H 0.05 1.08 6.15 -2.39 -0.01 1.07 16 29 H 0.06 0.97 8.02 -2.39 -0.02 0.95 16 30 H 0.05 1.00 7.51 -2.39 -0.02 0.98 16 31 H 0.08 1.00 8.03 -2.38 -0.02 0.98 16 32 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.06 1.01 7.87 -2.39 -0.02 1.00 16 36 H 0.09 0.98 5.96 -2.39 -0.01 0.96 16 37 H 0.05 1.31 6.80 -2.39 -0.02 1.29 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 0.77 6.21 -2.39 -0.01 0.75 16 40 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.40 3.46 9.12 -74.06 -0.68 2.78 16 42 H 0.09 2.34 3.88 -2.39 -0.01 2.33 16 43 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.40 11.77 5.41 -92.70 -0.50 11.27 16 45 H 0.12 4.45 6.37 -2.91 -0.02 4.44 16 46 H 0.12 5.87 6.25 -2.91 -0.02 5.85 16 47 H 0.29 12.72 8.29 -92.72 -0.77 11.96 16 48 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 49 H 0.10 4.91 7.63 -2.91 -0.02 4.89 16 Total: -1.00 -65.35 385.95 1.82 -63.54 By element: Atomic # 1 Polarization: 42.40 SS G_CDS: -0.21 Total: 42.19 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.26 Total: -35.71 kcal Atomic # 7 Polarization: -62.96 SS G_CDS: -2.16 Total: -65.13 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -2.10 Total: -42.52 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Total: -65.35 1.82 -63.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270379340.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.366 kcal (2) G-P(sol) polarization free energy of solvation -65.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds